ERICH3 (glutamate rich 3) - Rat Genome Database

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Gene: ERICH3 (glutamate rich 3) Canis lupus familiaris
Analyze
Symbol: ERICH3
Name: glutamate rich 3
RGD ID: 12222855
Description: INVOLVED IN cilium assembly (ortholog); FOUND IN cytoplasm (ortholog); non-motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C6H1orf173; glutamate-rich protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1671,706,954 - 71,802,470 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl671,746,262 - 71,788,635 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha674,370,736 - 74,467,798 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0672,300,511 - 72,397,488 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1671,794,381 - 71,889,537 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0671,741,133 - 71,836,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0672,235,646 - 72,333,606 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ERICH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1671,706,954 - 71,802,470 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl671,746,262 - 71,788,635 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha674,370,736 - 74,467,798 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0672,300,511 - 72,397,488 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1671,794,381 - 71,889,537 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0671,741,133 - 71,836,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0672,235,646 - 72,333,606 (+)NCBIUU_Cfam_GSD_1.0
ERICH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,568,123 - 74,674,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,568,117 - 74,673,792 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,033,807 - 75,139,476 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,806,383 - 74,912,010 (-)NCBINCBI36Build 36hg18NCBI36
Celera173,279,099 - 73,384,675 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef173,168,296 - 73,273,823 (-)NCBIHuRef
CHM1_1175,149,271 - 75,254,893 (-)NCBICHM1_1
T2T-CHM13v2.0174,409,490 - 74,515,692 (-)NCBIT2T-CHM13v2.0
Erich3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393154,416,770 - 154,454,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3154,369,496 - 154,473,427 (+)EnsemblGRCm39 Ensembl
GRCm383154,663,731 - 154,767,790 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3154,663,859 - 154,767,790 (+)EnsemblGRCm38mm10GRCm38
MGSCv373154,374,097 - 154,411,976 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363154,658,596 - 154,676,255 (+)NCBIMGSCv36mm8
Celera3161,169,504 - 161,207,061 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map379.28NCBI
Erich3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82246,275,438 - 246,377,673 (+)NCBIGRCr8
mRatBN7.22243,615,777 - 243,717,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2243,615,872 - 243,715,317 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02260,947,970 - 261,049,973 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,997,497 - 261,032,821 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02279,609,567 - 279,710,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42252,504,847 - 252,606,168 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2235,540,060 - 235,640,461 (+)NCBICelera
Cytogenetic Map2q45NCBI
Erich3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542318,010,090 - 18,108,513 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542318,009,243 - 18,110,340 (+)NCBIChiLan1.0ChiLan1.0
ERICH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21152,205,953 - 152,311,776 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11151,366,352 - 151,472,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,796,620 - 73,902,429 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,771,318 - 75,876,673 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,774,304 - 75,876,673 (-)Ensemblpanpan1.1panPan2
Erich3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,354,911 - 86,458,294 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365711,864,070 - 1,968,743 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365711,865,342 - 1,968,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERICH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16138,503,816 - 138,615,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26128,368,008 - 128,479,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERICH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12058,485,324 - 58,596,543 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2058,485,373 - 58,600,011 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603358,856,243 - 58,970,695 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erich3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474222,007,473 - 22,113,643 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ERICH3
1627 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000032492   ⟹   ENSCAFP00000030259
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl671,746,262 - 71,788,635 (+)Ensembl
RefSeq Acc Id: XM_038480308   ⟹   XP_038336236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1671,794,381 - 71,889,537 (+)NCBI
RefSeq Acc Id: XM_038535531   ⟹   XP_038391459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha674,370,736 - 74,467,798 (+)NCBI
RefSeq Acc Id: XM_038538958   ⟹   XP_038394886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0672,235,646 - 72,333,606 (+)NCBI
RefSeq Acc Id: XM_038605794   ⟹   XP_038461722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0671,741,133 - 71,836,657 (+)NCBI
RefSeq Acc Id: XM_038667676   ⟹   XP_038523604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0672,300,511 - 72,397,488 (+)NCBI
Ensembl Acc Id: ENSCAFP00000030259   ⟸   ENSCAFT00000032492
RefSeq Acc Id: XP_038336236   ⟸   XM_038480308
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461722   ⟸   XM_038605794
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038523604   ⟸   XM_038667676
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038391459   ⟸   XM_038535531
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038394886   ⟸   XM_038538958
- Peptide Label: isoform X4
Protein Domains
DUF4590


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020406 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017732 UniProtKB/TrEMBL
  ENSCAFG00040001081 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000032492.5 UniProtKB/TrEMBL
  ENSCAFT00030032721.1 UniProtKB/TrEMBL
  ENSCAFT00040002026.1 UniProtKB/TrEMBL
InterPro DUF4590 UniProtKB/TrEMBL
  ERICH3 UniProtKB/TrEMBL
NCBI Gene ERICH3 ENTREZGENE
PANTHER GLUTAMATE-RICH PROTEIN 3 UniProtKB/TrEMBL
  PTHR23034 UniProtKB/TrEMBL
Pfam DUF4590 UniProtKB/TrEMBL
UniProt A0A8C0PNG1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54020 ENTREZGENE