SLC39A5 (solute carrier family 39 member 5) - Rat Genome Database

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Gene: SLC39A5 (solute carrier family 39 member 5) Sus scrofa
Analyze
Symbol: SLC39A5
Name: solute carrier family 39 member 5
RGD ID: 14153920
Description: ENCODES a protein that exhibits metal ion transmembrane transporter activity (inferred); monoatomic cation:bicarbonate symporter activity (inferred); zinc ion transmembrane transporter activity (inferred); INVOLVED IN cellular response to zinc ion starvation (ortholog); positive regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH genetic disease (ortholog); Myopia 24, Autosomal Dominant (ortholog); FOUND IN basolateral plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 39 (metal ion transporter), member 5; solute carrier family 39 (zinc transporter), member 5; zinc transporter ZIP5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,631,924 - 21,637,646 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,631,874 - 21,640,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,030,339 - 23,036,253 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC39A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,631,924 - 21,637,646 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,631,874 - 21,640,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,030,339 - 23,036,253 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC39A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,230,051 - 56,237,846 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,230,049 - 56,237,846 (+)EnsemblGRCh38hg38GRCh38
GRCh371256,623,835 - 56,631,630 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,910,894 - 54,917,897 (+)NCBINCBI36Build 36hg18NCBI36
Build 341254,910,893 - 54,917,894NCBI
Celera1256,276,713 - 56,284,524 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1253,662,814 - 53,670,623 (+)NCBIHuRef
CHM1_11256,591,211 - 56,599,021 (+)NCBICHM1_1
T2T-CHM13v2.01256,197,676 - 56,205,471 (+)NCBIT2T-CHM13v2.0
Slc39a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,231,796 - 128,237,145 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,231,800 - 128,237,098 (-)EnsemblGRCm39 Ensembl
GRCm3810128,395,927 - 128,401,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,395,931 - 128,401,229 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710127,832,987 - 127,838,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,798,883 - 127,803,466 (-)NCBIMGSCv36mm8
Celera10130,784,187 - 130,789,483 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.55NCBI
Slc39a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,409,360 - 1,415,407 (-)NCBIGRCr8
mRatBN7.27822,873 - 830,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7824,818 - 830,242 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,586,578 - 3,591,992 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,462,559 - 5,467,973 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,760,340 - 5,765,764 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,813,875 - 2,819,917 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,813,875 - 2,819,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,792,038 - 2,798,370 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,686,969 - 1,692,393 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.171,687,705 - 1,692,002 (-)NCBI
Celera7698,310 - 703,734 (-)NCBICelera
Cytogenetic Map7q11NCBI
Slc39a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,843,112 - 3,849,794 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,843,492 - 3,849,794 (+)NCBIChiLan1.0ChiLan1.0
SLC39A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,094,033 - 38,102,029 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,090,801 - 38,098,797 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,677,330 - 32,685,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,929,033 - 32,936,826 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,929,033 - 32,936,158 (-)Ensemblpanpan1.1panPan2
SLC39A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110552,755 - 557,319 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10616,158 - 620,678 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010561,381 - 565,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10561,346 - 565,860 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110538,832 - 543,351 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010780,614 - 786,334 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010905,885 - 910,417 (+)NCBIUU_Cfam_GSD_1.0
Slc39a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,224,501 - 58,231,208 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646640,253 - 645,617 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646638,956 - 649,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,183,305 - 52,192,469 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,184,617 - 52,191,764 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,794,536 - 193,802,090 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,767,713 - 11,774,075 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,767,713 - 11,774,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC39A5
86 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system
High
Medium 1
Low 4 2
Below cutoff 5 1 1 2 11 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001927701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003126265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013988303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU498845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU694915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01132655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000000413   ⟹   ENSSSCP00000000407
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,631,964 - 21,637,646 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037549   ⟹   ENSSSCP00000043904
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,631,991 - 21,637,646 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046133   ⟹   ENSSSCP00000044361
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,633,033 - 21,637,645 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000103517   ⟹   ENSSSCP00000080997
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,631,924 - 21,637,645 (+)Ensembl
RefSeq Acc Id: XM_001927701   ⟹   XP_001927736
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,906 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003126265   ⟹   XP_003126313
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,915 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655607   ⟹   XP_005655664
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,882 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655608   ⟹   XP_005655665
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,874 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655609   ⟹   XP_005655666
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,913 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655611   ⟹   XP_005655668
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,916 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655612   ⟹   XP_005655669
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,903 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655613   ⟹   XP_005655670
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,879 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655614   ⟹   XP_005655671
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,916 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013988303   ⟹   XP_013843757
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,882 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092859   ⟹   XP_020948518
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,913 - 21,640,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092860   ⟹   XP_020948519
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,631,915 - 21,640,476 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005655665   ⟸   XM_005655608
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655670   ⟸   XM_005655613
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655664   ⟸   XM_005655607
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843757   ⟸   XM_013988303
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655669   ⟸   XM_005655612
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001927736   ⟸   XM_001927701
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655666   ⟸   XM_005655609
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020948518   ⟸   XM_021092859
- UniProtKB: A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL),   F1SLZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003126313   ⟸   XM_003126265
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020948519   ⟸   XM_021092860
- UniProtKB: A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL),   F1SLZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655671   ⟸   XM_005655614
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655668   ⟸   XM_005655611
- UniProtKB: F1SLZ7 (UniProtKB/TrEMBL),   A0A4X1W3N1 (UniProtKB/TrEMBL),   A0A480S7M3 (UniProtKB/TrEMBL),   A0A4X1WAN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043904   ⟸   ENSSSCT00000037549
RefSeq Acc Id: ENSSSCP00000044361   ⟸   ENSSSCT00000046133
RefSeq Acc Id: ENSSSCP00000000407   ⟸   ENSSSCT00000000413
RefSeq Acc Id: ENSSSCP00000080997   ⟸   ENSSSCT00000103517


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000385 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035011654 UniProtKB/TrEMBL
  ENSSSCG00055004932 UniProtKB/TrEMBL
  ENSSSCG00065059353 UniProtKB/TrEMBL
  ENSSSCG00070029730 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000413 ENTREZGENE
  ENSSSCT00000000413.4 UniProtKB/TrEMBL
  ENSSSCT00000037549 ENTREZGENE
  ENSSSCT00000037549.3 UniProtKB/TrEMBL
  ENSSSCT00000046133 ENTREZGENE
  ENSSSCT00000046133.3 UniProtKB/TrEMBL
  ENSSSCT00000103517 ENTREZGENE
  ENSSSCT00000103517.1 UniProtKB/TrEMBL
  ENSSSCT00035014660.1 UniProtKB/TrEMBL
  ENSSSCT00055009741.1 UniProtKB/TrEMBL
  ENSSSCT00065081309.1 UniProtKB/TrEMBL
  ENSSSCT00065081348.1 UniProtKB/TrEMBL
  ENSSSCT00070059751.1 UniProtKB/TrEMBL
  ENSSSCT00070059753.1 UniProtKB/TrEMBL
InterPro ZIP UniProtKB/TrEMBL
KEGG Report ssc:100155542 UniProtKB/TrEMBL
NCBI Gene SLC39A5 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 39 UniProtKB/TrEMBL
  ZINC TRANSPORTER ZIP5 UniProtKB/TrEMBL
Pfam Zip UniProtKB/TrEMBL
UniProt A0A287AJ39_PIG UniProtKB/TrEMBL
  A0A287AKD9_PIG UniProtKB/TrEMBL
  A0A480S7M3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W3N1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WAN6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FNC4_PIG UniProtKB/TrEMBL
  F1SLZ7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93106 ENTREZGENE