MRPS14 (mitochondrial ribosomal protein S14) - Rat Genome Database

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Gene: MRPS14 (mitochondrial ribosomal protein S14) Sus scrofa
Analyze
Symbol: MRPS14
Name: mitochondrial ribosomal protein S14
RGD ID: 14153624
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN mitochondrial translation (inferred); translation (inferred); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); combined oxidative phosphorylation deficiency 38 (ortholog); FOUND IN cytoplasm (inferred); intracellular organelle (inferred); mitochondrial small ribosomal subunit (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S14, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,097,849 - 117,137,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,097,841 - 117,137,188 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,704,598 - 128,715,495 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPS14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,097,849 - 117,137,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,097,841 - 117,137,188 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,704,598 - 128,715,495 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,012,958 - 175,023,425 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,010,789 - 175,023,425 (-)EnsemblGRCh38hg38GRCh38
GRCh371174,982,094 - 174,992,561 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,249,751 - 173,259,184 (-)NCBINCBI36Build 36hg18NCBI36
Build 341171,714,784 - 171,724,218NCBI
Celera1148,092,797 - 148,102,230 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1146,208,425 - 146,218,922 (-)NCBIHuRef
CHM1_11176,405,063 - 176,415,560 (-)NCBICHM1_1
T2T-CHM13v2.01174,366,714 - 174,377,180 (-)NCBIT2T-CHM13v2.0
Mrps14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,022,785 - 160,028,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,022,785 - 160,029,740 (+)EnsemblGRCm39 Ensembl
GRCm381160,195,215 - 160,201,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,195,215 - 160,202,170 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,125,391 - 162,131,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,031,937 - 162,037,863 (+)NCBIMGSCv36mm8
Celera1162,607,096 - 162,612,942 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.59NCBI
Mrps14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81374,962,597 - 74,968,344 (+)NCBIGRCr8
mRatBN7.21372,429,168 - 72,434,915 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1372,408,558 - 72,434,915 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1375,013,704 - 75,019,477 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01376,306,228 - 76,311,975 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01373,565,777 - 73,571,524 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01377,940,454 - 77,946,201 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1377,940,454 - 77,946,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,847,625 - 82,853,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,614,841 - 75,620,588 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11375,629,051 - 75,634,776 (+)NCBI
Celera1372,234,949 - 72,240,696 (+)NCBICelera
Cytogenetic Map13q22NCBI
Mrps14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540614,844,301 - 14,847,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540614,844,301 - 14,847,389 (-)NCBIChiLan1.0ChiLan1.0
MRPS14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2174,708,443 - 74,720,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1174,382,075 - 74,392,599 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01150,524,532 - 150,535,053 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11154,224,170 - 154,233,193 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1154,222,744 - 154,233,292 (-)Ensemblpanpan1.1panPan2
MRPS14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1724,342,371 - 24,368,519 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha723,868,579 - 23,894,721 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0724,090,104 - 24,116,256 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl724,090,194 - 24,117,251 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1724,002,891 - 24,028,933 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0724,093,887 - 24,120,018 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0724,238,930 - 24,265,074 (+)NCBIUU_Cfam_GSD_1.0
Mrps14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934495,345,293 - 95,349,734 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648113,192,021 - 13,195,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648113,192,030 - 13,195,812 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12554,231,605 - 54,240,724 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2554,231,643 - 54,240,472 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605555,805,432 - 55,814,579 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247716,975,673 - 6,978,290 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247716,975,680 - 6,978,290 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPS14
1669 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000052643   ⟹   ENSSSCP00000046446
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,097,849 - 117,148,049 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000058389   ⟹   ENSSSCP00000048246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,097,849 - 117,137,110 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000091111   ⟹   ENSSSCP00000065040
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,100,026 - 117,115,209 (-)Ensembl
RefSeq Acc Id: XM_013989625   ⟹   XP_013845079
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,097,841 - 117,137,188 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013845079   ⟸   XM_013989625
- UniProtKB: A0A0M3KL53 (UniProtKB/TrEMBL),   A0A4X1UDB0 (UniProtKB/TrEMBL),   A0A4X1U939 (UniProtKB/TrEMBL),   A0A8D1SV92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000048246   ⟸   ENSSSCT00000058389
RefSeq Acc Id: ENSSSCP00000046446   ⟸   ENSSSCT00000052643
RefSeq Acc Id: ENSSSCP00000065040   ⟸   ENSSSCT00000091111


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031435 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005033266 UniProtKB/TrEMBL
  ENSSSCG00015079882 UniProtKB/TrEMBL
  ENSSSCG00025034534 UniProtKB/TrEMBL
  ENSSSCG00030069728 UniProtKB/TrEMBL
  ENSSSCG00035014545 UniProtKB/TrEMBL
  ENSSSCG00045002371 UniProtKB/TrEMBL
  ENSSSCG00050011010 UniProtKB/TrEMBL
  ENSSSCG00055012548 UniProtKB/TrEMBL
  ENSSSCG00060012266 UniProtKB/TrEMBL
  ENSSSCG00065043721 UniProtKB/TrEMBL
  ENSSSCG00070016074 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000058389 ENTREZGENE
  ENSSSCT00000058389.2 UniProtKB/TrEMBL
  ENSSSCT00000091111.2 UniProtKB/TrEMBL
  ENSSSCT00005053138.1 UniProtKB/TrEMBL
  ENSSSCT00005053209.1 UniProtKB/TrEMBL
  ENSSSCT00015108512.1 UniProtKB/TrEMBL
  ENSSSCT00025047082.1 UniProtKB/TrEMBL
  ENSSSCT00030097553.1 UniProtKB/TrEMBL
  ENSSSCT00035018446.1 UniProtKB/TrEMBL
  ENSSSCT00045003702.1 UniProtKB/TrEMBL
  ENSSSCT00050014840.1 UniProtKB/TrEMBL
  ENSSSCT00055024693.1 UniProtKB/TrEMBL
  ENSSSCT00060016052.1 UniProtKB/TrEMBL
  ENSSSCT00065059807.1 UniProtKB/TrEMBL
  ENSSSCT00070031563.1 UniProtKB/TrEMBL
  ENSSSCT00070031571.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1480 UniProtKB/TrEMBL
InterPro Ribosomal_S14 UniProtKB/TrEMBL
NCBI Gene MRPS14 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S14, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR19836 UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A0M3KL53 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U939 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UDB0 ENTREZGENE
  A0A8D0YV69_PIG UniProtKB/TrEMBL
  A0A8D1SV92 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UDB0 UniProtKB/TrEMBL
  A0A5G2QLY8 UniProtKB/TrEMBL
VGNC ID VGNC:90383 ENTREZGENE