Mrps14 (mitochondrial ribosomal protein S14) - Rat Genome Database

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Gene: Mrps14 (mitochondrial ribosomal protein S14) Ictidomys tridecemlineatus
Analyze
Symbol: Mrps14
Name: mitochondrial ribosomal protein S14
RGD ID: 12511582
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN mitochondrial translation (inferred); translation (inferred); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); combined oxidative phosphorylation deficiency 38 (ortholog); FOUND IN cytoplasm (inferred); mitochondrial small ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S14, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934495,345,293 - 95,349,734 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648113,192,021 - 13,195,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648113,192,030 - 13,195,812 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mrps14Squirrel1q24 Deletion Syndrome  ISORGD:13197728554872ClinVar Annotator: match by term: 1q24q25 microdeletion syndromeClinVarPMID:21548129|PMID:21681106|PMID:25741868|PMID:26333682
Mrps14Squirrelantithrombin III deficiency  ISORGD:13197728554872ClinVar Annotator: match by term: Hereditary antithrombin deficiencyClinVar 
Mrps14Squirrelcombined oxidative phosphorylation deficiency 38  ISORGD:13197728554872ClinVar Annotator: match by term: Combined oxidative phosphorylation deficiency 38 | ClinVar Annotator: match by more ...ClinVarPMID:25741868|PMID:28492532|PMID:30358850
Mrps14Squirrelgastrointestinal stromal tumor  ISORGD:13197728554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
Mrps14Squirrelparathyroid carcinoma  ISORGD:13197728554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mrps14Squirrelcombined oxidative phosphorylation deficiency 38  ISORGD:13197727240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mrps14Squirrelmitochondrial translation involved_inIEAUniProtKB:O60783|ensembl:ENSP00000420714150520179 EnsemblGO_REF:0000107
Mrps14Squirreltranslation involved_inIEAPANTHER:PTN000457014150520179 TreeGrafterGO_REF:0000118
Mrps14Squirreltranslation involved_inIEAInterPro:IPR001209150520179 InterProGO_REF:0000002

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mrps14Squirrelcytoplasm located_inIEAARBA:ARBA00026971150520179 UniProtGO_REF:0000117
Mrps14Squirrelmitochondrial small ribosomal subunit part_ofIEAPANTHER:PTN000457014150520179 TreeGrafterGO_REF:0000118
Mrps14Squirrelmitochondrial small ribosomal subunit part_ofIEAUniProtKB:O60783|ensembl:ENSP00000420714150520179 EnsemblGO_REF:0000107
Mrps14Squirrelmitochondrion located_inIEAUniProtKB:O60783|ensembl:ENSP00000420714150520179 EnsemblGO_REF:0000107
Mrps14Squirrelnuclear membrane located_inIEAUniProtKB:O60783|ensembl:ENSP00000420714150520179 EnsemblGO_REF:0000107
Mrps14Squirrelribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-0687150520179 UniProtGO_REF:0000043
Mrps14Squirrelribosome located_inIEAUniProtKB-KW:KW-0689150520179 UniProtGO_REF:0000043
Mrps14Squirrelribosome located_inIEAInterPro:IPR001209150520179 InterProGO_REF:0000002
Mrps14Squirrelsmall ribosomal subunit part_ofIEAPANTHER:PTN000457014150520179 TreeGrafterGO_REF:0000118
1 to 9 of 9 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mrps14Squirrelprotein binding enablesISOUniProtKB:Q810M69068941 PMID:25369936UniProtPMID:25369936
Mrps14Squirrelprotein binding enablesISOUniProtKB:P06396|UniProtKB:P22607|UniProtKB:Q9UMX0|UniProtKB:Q9Y6499068941 PMID:32814053IntActPMID:32814053
Mrps14Squirrelstructural constituent of ribosome enablesIEAPANTHER:PTN000457014150520179 TreeGrafterGO_REF:0000118
Mrps14Squirrelstructural constituent of ribosome enablesIEAInterPro:IPR001209150520179 InterProGO_REF:0000002

PMID:22301074   PMID:30032202  



Mrps14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934495,345,293 - 95,349,734 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648113,192,021 - 13,195,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648113,192,030 - 13,195,812 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,012,958 - 175,023,425 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,010,789 - 175,023,425 (-)EnsemblGRCh38hg38GRCh38
GRCh371174,982,094 - 174,992,561 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,249,751 - 173,259,184 (-)NCBINCBI36Build 36hg18NCBI36
Build 341171,714,784 - 171,724,218NCBI
Celera1148,092,797 - 148,102,230 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1146,208,425 - 146,218,922 (-)NCBIHuRef
CHM1_11176,405,063 - 176,415,560 (-)NCBICHM1_1
T2T-CHM13v2.01174,366,714 - 174,377,180 (-)NCBIT2T-CHM13v2.0
Mrps14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,022,785 - 160,028,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,022,785 - 160,029,740 (+)EnsemblGRCm39 Ensembl
GRCm381160,195,215 - 160,201,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,195,215 - 160,202,170 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,125,391 - 162,131,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,031,937 - 162,037,863 (+)NCBIMGSCv36mm8
Celera1162,607,096 - 162,612,942 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.59NCBI
Mrps14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81374,962,597 - 74,968,344 (+)NCBIGRCr8
mRatBN7.21372,429,168 - 72,434,915 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1372,408,558 - 72,434,915 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1375,013,704 - 75,019,477 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01376,306,228 - 76,311,975 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01373,565,777 - 73,571,524 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01377,940,454 - 77,946,201 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1377,940,454 - 77,946,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,847,625 - 82,853,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,614,841 - 75,620,588 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11375,629,051 - 75,634,776 (+)NCBI
Celera1372,234,949 - 72,240,696 (+)NCBICelera
Cytogenetic Map13q22NCBI
Mrps14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540614,844,301 - 14,847,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540614,844,301 - 14,847,389 (-)NCBIChiLan1.0ChiLan1.0
MRPS14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2174,708,443 - 74,720,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1174,382,075 - 74,392,599 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01150,524,532 - 150,535,053 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11154,224,170 - 154,233,193 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1154,222,744 - 154,233,292 (-)Ensemblpanpan1.1panPan2
MRPS14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1724,342,371 - 24,368,519 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha723,868,579 - 23,894,721 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0724,090,104 - 24,116,256 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl724,090,194 - 24,117,251 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1724,002,891 - 24,028,933 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0724,093,887 - 24,120,018 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0724,238,930 - 24,265,074 (+)NCBIUU_Cfam_GSD_1.0
MRPS14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,097,849 - 117,137,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,097,841 - 117,137,188 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,704,598 - 128,715,495 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12554,231,605 - 54,240,724 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2554,231,643 - 54,240,472 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605555,805,432 - 55,814,579 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247716,975,673 - 6,978,290 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247716,975,680 - 6,978,290 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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1 to 10 of 1654 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001184880.2(PCDH19):c.1700C>T (p.Pro567Leu) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000763636]|not provided [RCV000521156] ChrX:100406898 [GRCh38]
ChrX:99661896 [GRCh37]
ChrX:Xq22.1
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity
NM_001184880.2(PCDH19):c.209_210del (p.His70fs) microsatellite not provided [RCV000517089] ChrX:100408388..100408389 [GRCh38]
ChrX:99663386..99663387 [GRCh37]
ChrX:Xq22.1
pathogenic
NM_001184880.2(PCDH19):c.2994T>C (p.Thr998=) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV001419244]|Inborn genetic diseases [RCV002438374] ChrX:100296730 [GRCh38]
ChrX:99551728 [GRCh37]
ChrX:Xq22.1
likely benign
NM_001184880.2(PCDH19):c.1079A>C (p.Glu360Ala) single nucleotide variant not provided [RCV000520491] ChrX:100407519 [GRCh38]
ChrX:99662517 [GRCh37]
ChrX:Xq22.1
uncertain significance
NM_001184880.2(PCDH19):c.701A>G (p.Asn234Ser) single nucleotide variant not provided [RCV000523297] ChrX:100407897 [GRCh38]
ChrX:99662895 [GRCh37]
ChrX:Xq22.1
likely pathogenic
NM_001184880.2(PCDH19):c.2453del (p.Gln818fs) deletion Developmental and epileptic encephalopathy, 9 [RCV000555563] ChrX:100402687 [GRCh38]
ChrX:99657685 [GRCh37]
ChrX:Xq22.1
pathogenic
NM_001184880.2(PCDH19):c.2798A>G (p.Asp933Gly) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV001857916]|not specified [RCV000516258] ChrX:100341953 [GRCh38]
ChrX:99596951 [GRCh37]
ChrX:Xq22.1
uncertain significance
NM_001184880.2(PCDH19):c.1555C>T (p.Arg519Ter) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000641125] ChrX:100407043 [GRCh38]
ChrX:99662041 [GRCh37]
ChrX:Xq22.1
pathogenic
NM_001184880.2(PCDH19):c.2191G>A (p.Gly731Arg) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000641128] ChrX:100403621 [GRCh38]
ChrX:99658619 [GRCh37]
ChrX:Xq22.1
uncertain significance
NM_001184880.2(PCDH19):c.2391C>G (p.Asp797Glu) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000641129] ChrX:100402749 [GRCh38]
ChrX:99657747 [GRCh37]
ChrX:Xq22.1
uncertain significance
1 to 10 of 1654 rows





RefSeq Transcripts XM_005319777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000021185   ⟹   ENSSTOP00000014866
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648113,192,270 - 13,195,535 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000031906   ⟹   ENSSTOP00000028977
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648113,192,021 - 13,195,806 (+)Ensembl
RefSeq Acc Id: XM_005319777   ⟹   XP_005319834
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934495,345,293 - 95,349,734 (+)NCBI
SpeTri2.0NW_00493648113,192,030 - 13,195,812 (+)NCBI
Sequence:
Protein RefSeqs XP_005319834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014866.2
  ENSSTOP00000028977.1
GenBank Protein KAG3258678 (Get FASTA)   NCBI Sequence Viewer  
  KAG3258679 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005319834   ⟸   XM_005319777
- UniProtKB: A0A287D5W5 (UniProtKB/TrEMBL),   I3MRX1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000014866   ⟸   ENSSTOT00000021185
Ensembl Acc Id: ENSSTOP00000028977   ⟸   ENSSTOT00000031906



1 to 12 of 12 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000025353 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021185.2 UniProtKB/TrEMBL
  ENSSTOT00000031906.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1480 UniProtKB/TrEMBL
InterPro Ribosomal_S14 UniProtKB/TrEMBL
NCBI Gene Mrps14 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S14, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR19836 UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A287D5W5 ENTREZGENE, UniProtKB/TrEMBL
  I3MRX1 ENTREZGENE, UniProtKB/TrEMBL
1 to 12 of 12 rows