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Gene: SMARCAL1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1) Sus scrofa

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Symbol:

SMARCAL1

Name:

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1

RGD ID:

14140935

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent activity, acting on DNA (inferred); ATP-dependent DNA/DNA annealing activity (inferred); INVOLVED IN DNA damage response (inferred); double-strand break repair via nonhomologous end joining (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH atrioventricular septal defect (ortholog); atypical hemolytic-uremic syndrome (ortholog); Dwarfism (ortholog); FOUND IN DNA replication factor A complex (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	118,627,497 - 118,688,396 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	118,627,734 - 118,688,005 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	131,503,125 - 131,506,635 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMARCAL1	Pig	atrioventricular septal defect		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: AVC DEFECT	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	atypical hemolytic-uremic syndrome		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Atypical hemolytic-uremic syndrome	ClinVar	PMID:28492532 and PMID:28844315
SMARCAL1	Pig	Dwarfism		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Short stature	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	focal segmental glomerulosclerosis		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	focal segmental glomerulosclerosis 1		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Focal sclerosis with hyalinosis	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	genetic disease		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868 more ...
SMARCAL1	Pig	kidney disease		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: renal disease	ClinVar	PMID:25741868 and PMID:28492532
SMARCAL1	Pig	microcephaly		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital microcephaly	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	nephrotic syndrome		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Nephrotic syndrome	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	nephrotic syndrome type 2		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Steroid-resistant nephrotic syndrome	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	Neurodevelopmental Disorders		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
SMARCAL1	Pig	primary immunodeficiency disease		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inherited Immunodeficiency Diseases	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	primary microcephaly		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary microcephaly	ClinVar	PMID:11799392 more ...
SMARCAL1	Pig	Schimke immuno-osseous dysplasia		ISO	SMARCAL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schimke immuno-osseous dysplasia	ClinVar	PMID:11799392 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMARCAL1	Pig	Schimke immuno-osseous dysplasia		ISO	SMARCAL1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMARCAL1	Pig	DNA damage response	involved_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	DNA repair	involved_in	IBA	FB:FBgn0031655 more ...	150520179		GO_Central	GO_REF:0000033
SMARCAL1	Pig	double-strand break repair via nonhomologous end joining	involved_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	replication fork processing	involved_in	IBA	PANTHER:PTN002908525 more ...	150520179		GO_Central	GO_REF:0000033
SMARCAL1	Pig	replication fork processing	involved_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMARCAL1	Pig	DNA replication factor A complex	located_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	nuclear replication fork	is_active_in	IBA	PANTHER:PTN002244927 more ...	150520179		GO_Central	GO_REF:0000033
SMARCAL1	Pig	nucleoplasm	located_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
SMARCAL1	Pig	nucleus	located_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	site of double-strand break	located_in	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMARCAL1	Pig	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	150520179		UniProt	GO_REF:0000043
SMARCAL1	Pig	ATP binding	enables	IEA	InterPro:IPR000330	150520179		InterPro	GO_REF:0000002
SMARCAL1	Pig	ATP-dependent activity, acting on DNA	enables	IEA	UniProtKB:Q8BJL0 and ensembl:ENSMUSP00000047589	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	ATP-dependent DNA/DNA annealing activity	enables	IEA	UniProtKB:Q9NZC9 and ensembl:ENSP00000349823	150520179		Ensembl	GO_REF:0000107
SMARCAL1	Pig	helicase activity	enables	IEA	UniProtKB-KW:KW-0347	150520179		UniProt	GO_REF:0000043
SMARCAL1	Pig	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	150520179		UniProt	GO_REF:0000043
SMARCAL1	Pig	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	150520179		UniProt	GO_REF:0000043
SMARCAL1	Pig	protein binding	enables	ISO	UniProtKB:P15927	9068941	PMID:19793862 more ...	IntAct	PMID:19793862 more ...

PMID:14681463	PMID:22301074	PMID:30032202

SMARCAL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	118,627,497 - 118,688,396 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	118,627,734 - 118,688,005 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	131,503,125 - 131,506,635 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMARCAL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	216,412,484 - 216,483,053 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	216,412,383 - 216,483,053 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	217,277,207 - 217,347,776 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	216,986,820 - 217,056,021 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	217,104,083 - 217,173,278	NCBI
Celera	2	211,045,111 - 211,115,648 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	209,131,595 - 209,202,094 (+)	NCBI		HuRef
CHM1_1	2	217,282,680 - 217,353,309 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	216,894,907 - 216,965,465 (+)	NCBI		T2T-CHM13v2.0

Smarcal1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	72,575,593 - 72,675,949 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	72,622,410 - 72,672,293 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	72,536,695 - 72,636,790 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	72,583,251 - 72,633,134 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	72,629,825 - 72,683,364 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	72,516,478 - 72,566,341 (+)	NCBI		MGSCv36	mm8
Celera	1	73,151,284 - 73,205,338 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	36.72	NCBI

Smarcal1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	81,689,446 - 81,735,406 (+)	NCBI		GRCr8
mRatBN7.2	9	74,239,718 - 74,286,156 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	74,240,241 - 74,286,146 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	82,695,787 - 82,741,329 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	87,824,678 - 87,870,214 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	86,211,255 - 86,256,747 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	79,943,775 - 79,990,230 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	79,944,132 - 79,990,229 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	79,716,012 - 79,762,216 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	71,780,870 - 71,827,780 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	71,930,360 - 71,974,752 (+)	NCBI
Celera	9	71,834,400 - 71,880,797 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

Smarcal1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	16,719,931 - 16,784,709 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	16,724,286 - 16,784,129 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMARCAL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	119,040,341 - 119,111,253 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	119,055,327 - 119,126,253 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	103,672,934 - 103,743,802 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	222,276,294 - 222,347,258 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	222,276,353 - 222,347,258 (+)	Ensembl	panpan1.1		panPan2

SMARCAL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	23,364,941 - 23,425,206 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	23,367,220 - 23,419,248 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	24,193,550 - 24,253,982 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	23,392,255 - 23,452,837 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	23,392,945 - 23,447,926 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	23,277,174 - 23,331,540 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	23,229,412 - 23,289,770 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	23,247,796 - 23,308,267 (+)	NCBI		UU_Cfam_GSD_1.0

Smarcal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	171,702,084 - 171,797,210 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936586	828,650 - 888,047 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936586	828,661 - 887,988 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMARCAL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	102,253,187 - 102,319,356 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	102,255,453 - 102,319,330 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	97,083,733 - 97,149,570 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smarcal1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	8,644,826 - 8,706,591 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	8,645,340 - 8,708,039 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in SMARCAL1
1381 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3


RefSeq Transcripts	XM_021076244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK236465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU467796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01089353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000055777 ⟹ ENSSSCP00000051674

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,687,940 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000092984 ⟹ ENSSSCP00000075788

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,688,277 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000095241 ⟹ ENSSSCP00000075734

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,688,397 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000099096 ⟹ ENSSSCP00000079851

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,688,397 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000100616 ⟹ ENSSSCP00000079578

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,688,277 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000101965 ⟹ ENSSSCP00000078653

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,688,397 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000103179 ⟹ ENSSSCP00000077918

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,688,001 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000105212 ⟹ ENSSSCP00000078594

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,683,874 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000105577 ⟹ ENSSSCP00000079033

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,629,238 - 118,688,277 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000106589 ⟹ ENSSSCP00000079237

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	118,627,497 - 118,688,396 (+)	Ensembl

RefSeq Acc Id:

XM_021076244 ⟹ XP_020931903

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	118,627,734 - 118,688,005 (+)	NCBI

Sequence:

show sequence

CAAGTGAAGGTGATAAGAGTGGCAGTGGCGTCCCCCCAGACCGGGTGGAACACAGGTCCCAGCAAAAAGAAGAGGGGCGTCCATGCGGTTGGCAAGAGGCTATTTTAGCAAGCATCACGCCATGGTTT
TGCCAAGTTTCTGATAGAAAATTGACATTCCTGTGCCAGCATTTCCCTGTTAAAATGTCCTTGCCTCTTACAGAGGAGCAGAGGAAAAAAATTGAGGAGAATCGGCAAAAGGCTCTGGCCCGTAGAGC
TGAGAAATTAGCAGGACAGCATCAGAACACAGGCTCTGGCTCCTCCATTGCTGCCACATCTTCCCAGTCCAAGCAGGGCCCTTTCCAAAACCTCCCCCAGGATCCTTCTAAGTCAGGGAGCCATGGTA
TCATTTTCAAGCAACAGAATCCCCTGAGTTCAACTAATGGTGACCAGAGACCTCAAAATTCCCCCAGTTTTCAACTCAGTACCTCCGAACAGGCAAAGGGGACATGGAAGAAGGAAGAAGAGGTGCCC
ACAGCCTGCCTGAGCCACCGCCTACCAAGTCAAATGACTGTCGCTGGGATCTCCCCTCCCTTGGCACACAGTCCTCCAGAGGTCCCCAGCCAACAGCTCTTGGGTTATGCATTAGGTCAAGATCATCC
TCAGGCTTCACATGGGACCAAATCAACACCATTTGCTAATACAACTCATGAGCCTTTGGCCGGAGCAAAGAATCCCCAAGAGACAGCAGCTTCCTTGTCTGGACAGCCTCCCAGGGATGCTGTATTGG
AGGCAAGANTGGCGAGACCCTCTGCCTCAGGGCAGAACGTTGCTGATGTCCATTGTGGCACAGAGAGGATGACGCCCGGGACAGAAGGANAACTCCACCAGAAATTGGGGACCCCACATCAGCCAGCA
GCAAGCTCCCAGCAGGGAACATGCATCAGGATAGGAGATCGTTTCCAGGTGAAGATTGGGTACAATGCGGAGCTCATTGCAGTGTTTAAGAGTCTGCCCAGCAGACGTTATGATCCTGCCACTAAGAT
GTGGAACTTCAGCATGACCGACTACAATGCCCTGATGGAAGCAGCCCAACGCCTCCCTAGGGTCACCCTACAGTCTTTGGAAGGGGCCGAGGGCCACATGGAGTCGCCCTCCCCCAGTGGCAGCAGCA
GCATGGCCCAGACCTGCCTTCCTGCAGCTCCATCCCTCGCCTTTGTCAAAGGGCAGTGTATGCTTATCTCCCGGGCGCGCTTTGAGGCAGACATCGGCTATTCCGAGGACCTGATCGCACTGTTTAAA
CAGATGGAGTCCAGAAAATACGATGTCAAGACCAGGAAGTGGAACTTTCTCCTGGAGGAATACAATAAACTAATGGAAAAGGCACGCCACCTTCCACAAGTTCAGCTGGATCCTCTGCCCAAGACTGT
CACCCTGGCTTTTGCTGCTCAGCTTGAGAAGACGTCTCTCCATCCCGTGACAGATGTACCTGAGGCAGACCTTTCCGGAGTGGACTCCAAGCTCGTATCTAGCCTGCTGCCCTTTCAGAGGGCTGGAG
TCAATTTCGCCATCGCGAAAAAAGGCCGCCTGCTGCTTGCTGACGACATGGGCCTGGGGAAGACCATCCAAGCCATCTGCATAGCAGCCTATTACCGGAAGGAGTGGCCGCTCCTGGTGGTGGTACCA
TCGTCTGTGCGCTTTACCTGGGAGCAGGCCTTCCGTCAGTGGCTGCCGTCTCTGAGCCCAGACTGCATCAATGTCGTCGTGACCGGGAAGGACAGCCTGACAGCTGGCCTGGTCAACATTGTCAGTTT
TGATCTTCTGAGCAAGATAGAAAAACAGCTAAAAACCTCTTTTAAAGTTGTCATCATTGATGAATCTCACTTCCTCAAAAACATTAAGACCGCCCGGTGTCGTGCAGCTCTGACCTTCCTCAAGGTTG
CCAAGAGGGTGATCTTACTGTCGGGCACACCAGCCATGTCCCGGCCCGCAGAGCTCTACACGCAGATCCTTGCCGTCAAGCCAACTTTCTTCCCTCAGTTCCACGCCTTTGGACTTCGCTATTGTGGT
GCCAAGCGGCTGCCCTGGGGATGGGATTATTCAGGCTCCTCCAACCTCGGAGAGCTGAAGCTCCTGCTGGAGGAGGCGGTCATGCTGCGACGCCTCAAGTGTGACGTCCTTTCCCAGCTCCCAGCCAA
ACAGCGCAAGATGGTGGTGGTTGCCCCGGGCCAGATGAGTGCCAGGTCCAGAGCCGCCCTGGATGCCGTGGCCAAGGAGATGACCACCAAGAACAAAACCAAACTGCAGCAGAAAGAAGCCCTCATTC
TCTTCTTCAACAGAACAGCGGAGGCTAAAATCCCGTGTGTCATCGAGTATATCCTGGACCTACTGGAAAGTGGAAGAGAGAAGTTTCTGGTGTTTGCCCACCATAAGGTGGTTCTGGATGCAGTTACC
GAAGCGCTCGAGAGGAAACGCGTGCAGCACATCCGCATCGACGGATCCACCTCCTCAGCTGACCGTGAGGACCGGTGCCAGCGGTTCCAGCTGTCCAAGGGGCACACCGTGGCCGTGCTGTCCATCAC
CGCCGCCAACATGGGCCTCACCCTCTCCTCGGCTGATCTGGTGGTGTTCGCAGAGCTGTTCTGGAACCCAGGGGTGCTGATGCAGGCTGAGGACCGGGTGCACCGCATCGGACAGTCCAACTCCGTGG
GCATCCACTACCTGGTGGCGAGAGGCACAGCTGACGACTACCTTTGGCCCCTGATTCAAGAGAAGATTAAAGTTCTGGGTGAAGCTGGGCTTTCTGAGACCAATTTTTCAGAAATGACAGAAGCCAGA
GATTACTTCTACAAGGACCCAAAGCAGCAGGAGATCTATGACTTTTTCCAAAAGTCCTTTGAGGAAGACGGAAGCGATATGGAGCTGCTGGCGGCAGCAGAGTCCTTTGACCCAGGAAGTAGTTCCCA
GGACACAGGAGACCCACTGGACGAAAGCACATTGATGGGCAGTCCACAGAAGAAGNAGAGATTTGAATTTTTTGATAACTGGGACAGTTTTACCTCTCCTTTGTAAGAGGGGCAAAAAAATATTAAAA
ATCATGGAGTTCATTAAAATAAAAGAAGACATTTTGTTCTTAA

hide sequence


Protein RefSeqs	XP_020931903	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000051674
	ENSSSCP00000051674.3
	ENSSSCP00000075734.1
	ENSSSCP00000075788.1
	ENSSSCP00000077918.1
	ENSSSCP00000078594.1
	ENSSSCP00000078653.1
	ENSSSCP00000079033.1
	ENSSSCP00000079237.1
	ENSSSCP00000079578.1
	ENSSSCP00000079851.1
	ENSSSCP00015018848.1
	ENSSSCP00015018900.1
	ENSSSCP00015018928.1
	ENSSSCP00030014743.1
	ENSSSCP00030014753.1
	ENSSSCP00030014756.1
	ENSSSCP00030014768.1
	ENSSSCP00035013851.1
	ENSSSCP00045008723.1
	ENSSSCP00045008780.1
	ENSSSCP00045008819.1
	ENSSSCP00045008903.1
	ENSSSCP00055027203.1
	ENSSSCP00055027300.1
	ENSSSCP00055027409.1
	ENSSSCP00055027552.1
	ENSSSCP00070030089.1
	ENSSSCP00070030106.1
	ENSSSCP00070030108.1
	ENSSSCP00070030113.1

RefSeq Acc Id:

XP_020931903 ⟸ XM_021076244

- UniProtKB:

A0A480VGI8 (UniProtKB/TrEMBL), A0A8D0W4R8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLPLTEEQRKKIEENRQKALARRAEKLAGQHQNTGSGSSIAATSSQSKQGPFQNLPQDPSKSGSHGIIFKQQNPLSSTNGDQRPQNSPSFQLSTSEQAKGTWKKEEEVPTACLSHRLPSQMTVAGIS
PPLAHSPPEVPSQQLLGYALGQDHPQASHGTKSTPFANTTHEPLAGAKNPQETAASLSGQPPRDAVLEARXARPSASGQNVADVHCGTERMTPGTEGXLHQKLGTPHQPAASSQQGTCIRIGDRFQVK
IGYNAELIAVFKSLPSRRYDPATKMWNFSMTDYNALMEAAQRLPRVTLQSLEGAEGHMESPSPSGSSSMAQTCLPAAPSLAFVKGQCMLISRARFEADIGYSEDLIALFKQMESRKYDVKTRKWNFLL
EEYNKLMEKARHLPQVQLDPLPKTVTLAFAAQLEKTSLHPVTDVPEADLSGVDSKLVSSLLPFQRAGVNFAIAKKGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVVVPSSVRFTWEQAFRQWLPSL
SPDCINVVVTGKDSLTAGLVNIVSFDLLSKIEKQLKTSFKVVIIDESHFLKNIKTARCRAALTFLKVAKRVILLSGTPAMSRPAELYTQILAVKPTFFPQFHAFGLRYCGAKRLPWGWDYSGSSNLGE
LKLLLEEAVMLRRLKCDVLSQLPAKQRKMVVVAPGQMSARSRAALDAVAKEMTTKNKTKLQQKEALILFFNRTAEAKIPCVIEYILDLLESGREKFLVFAHHKVVLDAVTEALERKRVQHIRIDGSTS
SADREDRCQRFQLSKGHTVAVLSITAANMGLTLSSADLVVFAELFWNPGVLMQAEDRVHRIGQSNSVGIHYLVARGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEARDYFYKDPKQQEIYDFFQK
SFEEDGSDMELLAAAESFDPGSSSQDTGDPLDESTLMGSPQKKXRFEFFDNWDSFTSPL

hide sequence

Ensembl Acc Id:

ENSSSCP00000051674 ⟸ ENSSSCT00000055777

Ensembl Acc Id:

ENSSSCP00000079033 ⟸ ENSSSCT00000105577

Ensembl Acc Id:

ENSSSCP00000075734 ⟸ ENSSSCT00000095241

Ensembl Acc Id:

ENSSSCP00000079237 ⟸ ENSSSCT00000106589

Protein Domains

HARP Helicase ATP-binding Helicase C-terminal

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000035501	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015035899	UniProtKB/TrEMBL
	ENSSSCG00030023553	UniProtKB/TrEMBL
	ENSSSCG00035026478	UniProtKB/TrEMBL
	ENSSSCG00045007578	UniProtKB/TrEMBL
	ENSSSCG00055017448	UniProtKB/TrEMBL
	ENSSSCG00070018221	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000055777	ENTREZGENE
	ENSSSCT00000055777.3	UniProtKB/TrEMBL
	ENSSSCT00000092984.1	UniProtKB/TrEMBL
	ENSSSCT00000095241.1	UniProtKB/TrEMBL
	ENSSSCT00000099096.1	UniProtKB/TrEMBL
	ENSSSCT00000100616.1	UniProtKB/TrEMBL
	ENSSSCT00000101965.1	UniProtKB/TrEMBL
	ENSSSCT00000103179.1	UniProtKB/TrEMBL
	ENSSSCT00000105212.1	UniProtKB/TrEMBL
	ENSSSCT00000105577.1	UniProtKB/TrEMBL
	ENSSSCT00000106589.1	UniProtKB/TrEMBL
	ENSSSCT00015047580.1	UniProtKB/TrEMBL
	ENSSSCT00015047679.1	UniProtKB/TrEMBL
	ENSSSCT00015047756.1	UniProtKB/TrEMBL
	ENSSSCT00030032752.1	UniProtKB/TrEMBL
	ENSSSCT00030032766.1	UniProtKB/TrEMBL
	ENSSSCT00030032775.1	UniProtKB/TrEMBL
	ENSSSCT00030032805.1	UniProtKB/TrEMBL
	ENSSSCT00035034944.1	UniProtKB/TrEMBL
	ENSSSCT00045012712.1	UniProtKB/TrEMBL
	ENSSSCT00045012776.1	UniProtKB/TrEMBL
	ENSSSCT00045012833.1	UniProtKB/TrEMBL
	ENSSSCT00045012931.1	UniProtKB/TrEMBL
	ENSSSCT00055034245.1	UniProtKB/TrEMBL
	ENSSSCT00055034360.1	UniProtKB/TrEMBL
	ENSSSCT00055034507.1	UniProtKB/TrEMBL
	ENSSSCT00055034695.1	UniProtKB/TrEMBL
	ENSSSCT00070036018.1	UniProtKB/TrEMBL
	ENSSSCT00070036036.1	UniProtKB/TrEMBL
	ENSSSCT00070036038.1	UniProtKB/TrEMBL
	ENSSSCT00070036045.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	HARP_dom	UniProtKB/TrEMBL
	Helicase_ATP-bd	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
NCBI Gene	SMARCAL1	ENTREZGENE
PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	UniProtKB/TrEMBL
	SWI_SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	HARP	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PROSITE	HARP	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A287B6H5_PIG	UniProtKB/TrEMBL
	A0A480VGI8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UJC1_PIG	UniProtKB/TrEMBL
	A0A4X1ULH6_PIG	UniProtKB/TrEMBL
	A0A4X1ULI1_PIG	UniProtKB/TrEMBL
	A0A4X1UNL9_PIG	UniProtKB/TrEMBL
	A0A8D0W1G5_PIG	UniProtKB/TrEMBL
	A0A8D0W1H5_PIG	UniProtKB/TrEMBL
	A0A8D0W3U0_PIG	UniProtKB/TrEMBL
	A0A8D0W4R8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0Z759_PIG	UniProtKB/TrEMBL
	A0A8D1GZG9_PIG	UniProtKB/TrEMBL
	A0A8D1QUK1_PIG	UniProtKB/TrEMBL
	A0A8D1R123_PIG	UniProtKB/TrEMBL
	A0A8D1U4Y5_PIG	UniProtKB/TrEMBL
	A0A8W4F8S9_PIG	UniProtKB/TrEMBL
	A0A8W4FA73_PIG	UniProtKB/TrEMBL
	A0A8W4FGZ6_PIG	UniProtKB/TrEMBL
	A0A8W4FHW3_PIG	UniProtKB/TrEMBL
	A0A8W4FHX8_PIG	UniProtKB/TrEMBL
	A0A8W4FID9_PIG	UniProtKB/TrEMBL
	A0A8W4FJS3_PIG	UniProtKB/TrEMBL
	A0A8W4FK66_PIG	UniProtKB/TrEMBL
	A0A8W4FLQ5_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:95507	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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