Smarcal1 (SNF2 related chromatin remodeling annealing helicase 1) - Rat Genome Database

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Gene: Smarcal1 (SNF2 related chromatin remodeling annealing helicase 1) Rattus norvegicus
Analyze
Symbol: Smarcal1
Name: SNF2 related chromatin remodeling annealing helicase 1 (Ensembl:Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1)
RGD ID: 1306134
Description: Predicted to enable ATP-dependent DNA/DNA annealing activity and ATP-dependent activity, acting on DNA. Predicted to be involved in double-strand break repair via nonhomologous end joining; regulation of transcription by RNA polymerase II; and replication fork processing. Predicted to be located in nucleoplasm and site of double-strand break. Predicted to be part of DNA replication factor A complex. Predicted to be active in nuclear replication fork. Human ortholog(s) of this gene implicated in Schimke immuno-osseous dysplasia. Orthologous to human SMARCAL1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hepA-related protein; hypothetical protein LOC690314; LOC316477; LOC690314; sucrose nonfermenting protein 2-like 1; Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8981,689,446 - 81,735,406 (+)NCBIGRCr8
mRatBN7.2974,239,718 - 74,286,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl974,240,241 - 74,286,146 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx982,695,787 - 82,741,329 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0987,824,678 - 87,870,214 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0986,211,255 - 86,256,747 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0979,943,775 - 79,990,230 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl979,944,132 - 79,990,229 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0979,716,012 - 79,762,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4971,780,870 - 71,827,780 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1971,930,360 - 71,974,752 (+)NCBI
Celera971,834,400 - 71,880,797 (+)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mutant chromatin remodeling protein SMARCAL1 causes Schimke immuno-osseous dysplasia. Boerkoel CF, etal., Nat Genet. 2002 Feb;30(2):215-20. Epub 2002 Jan 22.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8702927   PMID:10857751   PMID:12477932   PMID:18974355   PMID:19793862   PMID:19793863   PMID:22705370   PMID:26089390  


Genomics

Comparative Map Data
Smarcal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8981,689,446 - 81,735,406 (+)NCBIGRCr8
mRatBN7.2974,239,718 - 74,286,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl974,240,241 - 74,286,146 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx982,695,787 - 82,741,329 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0987,824,678 - 87,870,214 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0986,211,255 - 86,256,747 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0979,943,775 - 79,990,230 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl979,944,132 - 79,990,229 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0979,716,012 - 79,762,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4971,780,870 - 71,827,780 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1971,930,360 - 71,974,752 (+)NCBI
Celera971,834,400 - 71,880,797 (+)NCBICelera
Cytogenetic Map9q33NCBI
SMARCAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382216,412,484 - 216,483,053 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2216,412,383 - 216,483,053 (+)EnsemblGRCh38hg38GRCh38
GRCh372217,277,207 - 217,347,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362216,986,820 - 217,056,021 (+)NCBINCBI36Build 36hg18NCBI36
Build 342217,104,083 - 217,173,278NCBI
Celera2211,045,111 - 211,115,648 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2209,131,595 - 209,202,094 (+)NCBIHuRef
CHM1_12217,282,680 - 217,353,309 (+)NCBICHM1_1
T2T-CHM13v2.02216,894,907 - 216,965,465 (+)NCBIT2T-CHM13v2.0
Smarcal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39172,575,593 - 72,675,949 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl172,622,410 - 72,672,293 (+)EnsemblGRCm39 Ensembl
GRCm38172,536,695 - 72,636,790 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl172,583,251 - 72,633,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv37172,629,825 - 72,683,364 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36172,516,478 - 72,566,341 (+)NCBIMGSCv36mm8
Celera173,151,284 - 73,205,338 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map136.72NCBI
Smarcal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545316,719,931 - 16,784,709 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545316,724,286 - 16,784,129 (-)NCBIChiLan1.0ChiLan1.0
SMARCAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213119,040,341 - 119,111,253 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B119,055,327 - 119,126,253 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B103,672,934 - 103,743,802 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B222,276,294 - 222,347,258 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B222,276,353 - 222,347,258 (+)Ensemblpanpan1.1panPan2
SMARCAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13723,364,941 - 23,425,206 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3723,367,220 - 23,419,248 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3724,193,550 - 24,253,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03723,392,255 - 23,452,837 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3723,392,945 - 23,447,926 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13723,277,174 - 23,331,540 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03723,229,412 - 23,289,770 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03723,247,796 - 23,308,267 (+)NCBIUU_Cfam_GSD_1.0
Smarcal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303171,702,084 - 171,797,210 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936586828,650 - 888,047 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936586828,661 - 887,988 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15118,627,467 - 118,688,397 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115118,627,734 - 118,688,005 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215131,503,125 - 131,506,635 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110102,253,187 - 102,319,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10102,255,453 - 102,319,330 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604097,083,733 - 97,149,570 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarcal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248238,644,826 - 8,706,591 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248238,645,340 - 8,708,039 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Smarcal1
520 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8
Count of miRNA genes:4
Interacting mature miRNAs:4
Transcripts:ENSRNOT00000022459, ENSRNOT00000071856
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000022459   ⟹   ENSRNOP00000022459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl974,240,241 - 74,286,146 (+)Ensembl
Rnor_6.0 Ensembl979,944,155 - 79,990,219 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000071856   ⟹   ENSRNOP00000064323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl974,240,241 - 74,286,146 (+)Ensembl
Rnor_6.0 Ensembl979,944,132 - 79,990,229 (+)Ensembl
RefSeq Acc Id: NM_001108222   ⟹   NP_001101692
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8981,689,468 - 81,735,406 (+)NCBI
mRatBN7.2974,240,218 - 74,286,156 (+)NCBI
Rnor_6.0979,944,132 - 79,990,229 (+)NCBI
Rnor_5.0979,716,012 - 79,762,216 (+)NCBI
RGSC_v3.4971,780,870 - 71,827,780 (+)RGD
Celera971,834,400 - 71,880,797 (+)RGD
Sequence:
RefSeq Acc Id: XM_008767235   ⟹   XP_008765457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8981,689,728 - 81,735,400 (+)NCBI
mRatBN7.2974,240,469 - 74,286,150 (+)NCBI
Rnor_6.0979,944,305 - 79,990,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596474   ⟹   XP_017451963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8981,691,195 - 81,735,400 (+)NCBI
mRatBN7.2974,241,934 - 74,286,150 (+)NCBI
Rnor_6.0979,944,305 - 79,990,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083659   ⟹   XP_038939587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8981,689,691 - 81,735,400 (+)NCBI
mRatBN7.2974,240,431 - 74,286,150 (+)NCBI
RefSeq Acc Id: XM_039083661   ⟹   XP_038939589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8981,689,770 - 81,735,400 (+)NCBI
mRatBN7.2974,240,603 - 74,286,150 (+)NCBI
RefSeq Acc Id: XM_039083662   ⟹   XP_038939590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8981,689,446 - 81,735,400 (+)NCBI
mRatBN7.2974,239,728 - 74,286,150 (+)NCBI
RefSeq Acc Id: XM_063267226   ⟹   XP_063123296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8981,689,728 - 81,735,400 (+)NCBI
RefSeq Acc Id: NP_001101692   ⟸   NM_001108222
- UniProtKB: B4F769 (UniProtKB/Swiss-Prot),   A0A8L2QV60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765457   ⟸   XM_008767235
- Peptide Label: isoform X1
- UniProtKB: B4F769 (UniProtKB/Swiss-Prot),   A0A8L2QV60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451963   ⟸   XM_017596474
- Peptide Label: isoform X1
- UniProtKB: B4F769 (UniProtKB/Swiss-Prot),   A0A8L2QV60 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022459   ⟸   ENSRNOT00000022459
Ensembl Acc Id: ENSRNOP00000064323   ⟸   ENSRNOT00000071856
RefSeq Acc Id: XP_038939590   ⟸   XM_039083662
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038939587   ⟸   XM_039083659
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939589   ⟸   XM_039083661
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123296   ⟸   XM_063267226
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B4F769-F1-model_v2 AlphaFold B4F769 1-910 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696738
Promoter ID:EPDNEW_R7262
Type:multiple initiation site
Name:Smarcal1_1
Description:Swi/SNF related matrix associated, actin dependent regulatorof chromatin, subfamily a-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0979,944,134 - 79,944,194EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306134 AgrOrtholog
BioCyc Gene G2FUF-27201 BioCyc
Ensembl Genes ENSRNOG00000016503 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00065008486 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022459.6 UniProtKB/Swiss-Prot
  ENSRNOT00000071856.4 UniProtKB/TrEMBL
  ENSRNOT00065013466 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.10810 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HARP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316477 UniProtKB/Swiss-Prot
NCBI Gene 316477 ENTREZGENE
PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45766:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HARP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2-rel_dom UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
PhenoGen Smarcal1 PhenoGen
PROSITE HARP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016503 RatGTEx
  ENSRNOG00065008486 RatGTEx
SMART DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2QV60 ENTREZGENE, UniProtKB/TrEMBL
  B4F769 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-08 Smarcal1  SNF2 related chromatin remodeling annealing helicase 1  Smarcal1  Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Smarcal1  Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1  LOC690314  hypothetical protein LOC690314  Data merged from RGD:1597374 737654 PROVISIONAL
2008-04-30 Smarcal1  Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1   Smarcal1_predicted  Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 LOC690314  hypothetical protein LOC690314  LOC679248  hypothetical protein LOC679248  Data merged from RGD:1590710 1643240 APPROVED
2006-11-20 LOC690314  hypothetical protein LOC690314      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC679248  hypothetical protein LOC679248      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Smarcal1_predicted  Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED