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Gene: YTHDF1 (YTH N6-methyladenosine RNA binding protein F1) Sus scrofa

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Symbol:

YTHDF1

Name:

YTH N6-methyladenosine RNA binding protein F1

RGD ID:

14128448

Description:

ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (inferred); ribosome binding (inferred); RNA binding (inferred); INVOLVED IN positive regulation of translational initiation (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (inferred); cytoplasmic stress granule (inferred); P-body (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

YTH domain-containing family protein 1; YTH N6-methyladenosine RNA binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,329,302 - 62,341,413 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	62,329,302 - 62,341,312 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
YTHDF1	Pig	colorectal cancer	ameliorates	ISO	YTHDF1 (Homo sapiens)	9068941	human cells in mouse model	RGD	PMID:34974791 and REF_RGD_ID:153344629

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
YTHDF1	Pig	autosomal dominant nocturnal frontal lobe epilepsy		ISO	YTHDF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal dominant nocturnal frontal lobe epilepsy	ClinVar	PMID:28492532
YTHDF1	Pig	benign familial infantile seizures 6		ISO	YTHDF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal dominant nocturnal frontal lobe epilepsy	ClinVar	PMID:28492532
YTHDF1	Pig	developmental and epileptic encephalopathy		ISO	YTHDF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:24811917 more ...
YTHDF1	Pig	developmental and epileptic encephalopathy 33		ISO	YTHDF1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:24811917 more ...
YTHDF1	Pig	early infantile epileptic encephalopathy		ISO	YTHDF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:24811917 more ...
YTHDF1	Pig	neuronal ceroid lipofuscinosis		ISO	YTHDF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Ceroid storage disease	ClinVar	PMID:25921748 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
YTHDF1	Pig	multiple myeloma		ISO	YTHDF1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:35038059

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
YTHDF1	Pig	learning	involved_in	IEA	UniProtKB:P59326 and ensembl:ENSMUSP00000037808	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	memory	involved_in	IEA	UniProtKB:P59326 and ensembl:ENSMUSP00000037808	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	mRNA destabilization	involved_in	IBA	MGI:1917431 more ...	150520179		GO_Central	GO_REF:0000033
YTHDF1	Pig	mRNA destabilization	involved_in	IEA	UniProtKB:P59326 more ...	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	organelle assembly	involved_in	IEA	UniProtKB:Q9BYJ9 and ensembl:ENSP00000359364	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	positive regulation of translation	involved_in	IEA	UniProtKB:P59326 more ...	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	positive regulation of translational initiation	NOT\|involved_in	ISO	YTHDF1 (Homo sapiens)	9068941	PMID:32492408	UniProt	PMID:32492408
YTHDF1	Pig	positive regulation of translational initiation	NOT\|involved_in	ISO	Ythdf1 (Mus musculus)	9068941	PMID:32943573	UniProt	PMID:32943573
YTHDF1	Pig	positive regulation of translational initiation	involved_in	IEA	UniProtKB:Q9BYJ9 and ensembl:ENSP00000359364	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	regulation of antigen processing and presentation	involved_in	IEA	UniProtKB:P59326 and ensembl:ENSMUSP00000037808	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	regulation of axon guidance	involved_in	IEA	UniProtKB:P59326 and ensembl:ENSMUSP00000037808	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	regulation of long-term synaptic potentiation	involved_in	IEA	UniProtKB:P59326 and ensembl:ENSMUSP00000037808	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	regulation of mRNA stability	involved_in	IEA	UniRule:UR001695762	150520179		UniProt	GO_REF:0000104
YTHDF1	Pig	regulation of mRNA stability	involved_in	IEA	UniProtKB:P59326 more ...	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	stress granule assembly	involved_in	IEA	UniProtKB:Q9BYJ9 and ensembl:ENSP00000359364	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
YTHDF1	Pig	cytoplasm	is_active_in	IBA	FB:FBgn0039261 more ...	150520179		GO_Central	GO_REF:0000033
YTHDF1	Pig	cytoplasm	located_in	IEA	UniProtKB:P59326 more ...	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	cytoplasmic stress granule	located_in	IEA	UniProtKB:Q9BYJ9 and ensembl:ENSP00000359364	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	P-body	located_in	IEA	UniProtKB:Q9BYJ9 and ensembl:ENSP00000359364	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
YTHDF1	Pig	mRNA binding	enables	IBA	FB:FBgn0027616 more ...	150520179		GO_Central	GO_REF:0000033
YTHDF1	Pig	N6-methyladenosine-containing RNA reader activity	enables	IBA	FB:FBgn0039261 more ...	150520179		GO_Central	GO_REF:0000033
YTHDF1	Pig	N6-methyladenosine-containing RNA reader activity	enables	IEA	UniRule:UR001695762	150520179		UniProt	GO_REF:0000104
YTHDF1	Pig	N6-methyladenosine-containing RNA reader activity	enables	IEA	UniProtKB:P59326 more ...	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	protein binding	enables	ISO	UniProtKB:Q7Z739	9068941	PMID:28106072 more ...	IntAct	PMID:28106072 more ...
YTHDF1	Pig	protein binding	enables	ISO	UniProtKB:P13569	9068941	PMID:35156780 and PMID:36012204	IntAct	PMID:35156780 and PMID:36012204
YTHDF1	Pig	protein binding	enables	ISO	UniProtKB:A5D8V6 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
YTHDF1	Pig	ribosome binding	enables	IEA	UniProtKB:Q9BYJ9 and ensembl:ENSP00000359364	150520179		Ensembl	GO_REF:0000107
YTHDF1	Pig	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	150520179		UniProt	GO_REF:0000043
YTHDF1	Pig	RNA binding	enables	IEA	InterPro:IPR007275	150520179		InterPro	GO_REF:0000002

PMID:30032202	PMID:30787270

YTHDF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,329,302 - 62,341,413 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	62,329,302 - 62,341,312 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

YTHDF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	63,195,429 - 63,216,131 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	63,195,429 - 63,216,139 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	61,826,781 - 61,847,483 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	61,297,226 - 61,317,983 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	61,297,228 - 61,317,983	NCBI
Celera	20	58,504,268 - 58,525,021 (-)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	58,551,559 - 58,578,606 (-)	NCBI		HuRef
CHM1_1	20	61,727,941 - 61,748,702 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,000,752 - 65,021,443 (-)	NCBI		T2T-CHM13v2.0

Ythdf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	180,546,170 - 180,562,729 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	180,546,170 - 180,562,742 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	180,904,377 - 180,920,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	180,904,377 - 180,920,949 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	180,639,082 - 180,655,641 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	180,833,785 - 180,850,344 (-)	NCBI		MGSCv36	mm8
Celera	2	184,990,626 - 185,007,152 (-)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.5	NCBI

Ythdf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,402,228 - 188,417,740 (-)	NCBI		GRCr8
mRatBN7.2	3	168,024,660 - 168,040,172 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,024,663 - 168,040,172 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	172,404,856 - 172,420,353 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,363,946 - 181,379,443 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,025,619 - 178,041,133 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,415,911 - 176,431,423 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,415,914 - 176,431,423 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	180,125,831 - 180,141,407 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	170,014,277 - 170,029,789 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	169,920,315 - 169,935,825 (-)	NCBI
Celera	3	164,544,900 - 164,560,398 (+)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

Ythdf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	935,182 - 951,722 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955528	935,182 - 951,722 (+)	NCBI	ChiLan1.0	ChiLan1.0

YTHDF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	68,978,501 - 68,999,192 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	68,970,507 - 68,991,196 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	59,575,703 - 59,596,447 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	61,115,366 - 61,135,639 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	61,116,645 - 61,135,769 (-)	Ensembl	panpan1.1		panPan2

YTHDF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	46,927,218 - 46,940,015 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	46,927,848 - 46,951,949 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	46,111,317 - 46,124,326 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	47,881,084 - 47,894,120 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	47,799,759 - 47,894,081 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	46,896,564 - 46,909,548 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,020,531 - 47,033,541 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	47,776,866 - 47,789,883 (-)	NCBI		UU_Cfam_GSD_1.0

Ythdf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,134,237 - 195,149,728 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	10,587,222 - 10,603,478 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	10,587,877 - 10,603,373 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YTHDF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	985,373 - 1,010,533 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	985,425 - 1,012,091 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	48,723,072 - 48,745,291 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ythdf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	28,917,942 - 28,933,599 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	28,918,466 - 28,933,593 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in YTHDF1
107 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3


RefSeq Transcripts	XM_021078235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021078236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01016209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000049062 ⟹ ENSSSCP00000031181

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	62,333,080 - 62,340,456 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000066311 ⟹ ENSSSCP00000038189

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	62,329,302 - 62,341,413 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000069497 ⟹ ENSSSCP00000062608

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	62,333,260 - 62,340,456 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000069911 ⟹ ENSSSCP00000073999

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	62,329,470 - 62,341,413 (-)	Ensembl

RefSeq Acc Id:

XM_021078235 ⟹ XP_020933894

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	17	62,329,302 - 62,341,312 (-)	NCBI

Sequence:

show sequence

CGCGGGGCCGCGAGAGCGCGGGTGACAGGCCCGGCCTCGCGGGGAGGCCCGAGCCGGCGGGTGCCCCGGCCCCGCGCCGCGCCGGCTGTTCATGAAGCATGTCGGCCACCAGCGTGGACCCCCAGAGA
ACGAAAGGACAGGATACTAAAGTACAAAATGGTTCTTTGCATCAGAAGGATAGCGTTCATGACAGTGACTTTGAGCCCTACCTTTCTGGACAGTCAAACCAGAGTAACAGTTACCCCTCCATGGCCGA
CCCCTACTTGTCCAGCTACTACCCGCCGCCGTCCATCGGATTCCCCTACTCCCTCAGCGAGGCACCCTGGTCCACTGGCGGGGACCCCCCGATCCCGTACCTCACCACCTACGGCCAGCTCAGTAACG
GAGACCATCACTTCATGCATGATGCTGTTTTTGGGCAGCCCGGGGGCCTGGGGAGCAACATCTACCAGCACAGGTTTAACTTCTTCCCCGAGAACCCCGCCTTCTCGGCCTGGGGCACAAGTGGGTCT
CAGGGGCAGCAGGCTCAGAGCTCCGCCTATGGGAGCAGCTACACCTACCCGCCCAGCTCCCTGGGCGGCACCATTGTGGACGGGCAGGCGGGCTTTCACAGTGACACCCTCAGCAAGGCCCCTGGCGT
GAACAGCCTGGAGCAAGGCATGGTGGGCCTGAAGCTCGGGGACGTCACCACCTCTGCTGTCAAGACGGTGGGGTCGGTGGTCAGCAGCGTGGCCATGACGGGCGTCCTGTCTGGCAGCGGAGGGCCCA
GTGTGAACATGCCAGGGTCGAAGCCCACGTCGTGGGCGGCCATTGCCAGCAAGCCCGCCAAGCCCCAGCCGAAGATGAAGGCCAAGAGTGGACCTGTGATCGGGGCTGCGCTGCCCCCTCCGCCCATA
AAGCATAACCTGGACATCGGCACCTGGGACAACAAAGGGCCGGCGCCCAAGGCCCCCCAGCAGGCGCCGGCCCCCCAGGCGACGCCCCAGCCCCAGCCGGTGGCGCAGCCTCTCCCGGCTCAGCCTCC
CCCTTTGGCCCACGCGCAGTATCCAGGCCCCCCTCAGCCGCCCCAGACCCGCTGGGTCGCCCCTCGCAACAGAAACGCGGCATTCGGGCAGAGCGGCCCCGGCTGCGGTGACAGCAACTCCCCCGGAG
GCGCCCCGCCCGGCGCGGCCCCGAGCCTGGAGTCCCACCCCGTCCTTGAGAAGCTGAAAGCCGCGCACAGCTACAACCCGCGGGAGTTCGACTGGAACCTGAAGAGCGGGCGCGTGTTCATCATCAAG
AGCTACTCGGAGGACGACGTGCACCGCTCCATCAAGTACTCCATCTGGTGCAGCACGGAGCACGGCAACCGGCGCCTGGACAGCGCCTTCCGCGCGCTGGGCAGCAAGGGGCCCGTCTACCTGCTCTT
CAGCGTCAACGGCAGCGGGCACTTCTGCGGGGTGGCCGAGATGAAGTCGCCCGTGGACTACGGCACCAGCGCCGGGGTCTGGTCTCAGGACAAGTGGAAGGGCAAGTTCGACGTGAAGTGGATCTTCG
TCAAGGACGTGCCCAACAACCAGCTCCGGCACATCCGGCTGGAGAACAACGACAACAAGCCGGTCACCAACTCCCGCGACACCCAGGAGGTGCCCCTGGAGAAGGCGAAGCAGGTGCTGAAGATCATC
GCCTCCTACAAGCACTCCACTTCCATCTTCGACGACTTTTCGCACTACGAGAAGCGCCAGGAGGAGGAGGAGGTGGTGCGCAAGGAACGGCAGAATCGGAGCAAACAGTGAGGACAGAGCCGTTTCCT
GCACCGTCTGACACGGACTGTGGGACCGTGCGCCCGGCACGGCGGAGGGCGTGGTGCGGGGCGCCGTCCCGGGCGTCGGCCCGGCCGGCCTCGTGCAGGGCTCGAGCGCGCGCGTCTTGCCCTTGTTT
GTAGTTTACGTGTGCCCAGAGCGGCCCTCGTCCGTCTGTCCCCTTTCTGTGTGTCATGGTCGGTGAGCGCTCACGGGGAGGGCGGTTTGTCGGCTGATGGCTCAGACCGCCGGAGCGCTCAGCGTGAG
TAGCCGTGAGGACCGAGTCCAGTCCATCCCAAAGATTTATTCTTGTTATCATGGTTATTTTCGGTGACAATTACGCTCTCGTTCTCACACTCACAGTCATTTGACGTCTTTACACGAGGCTCGTCTCA
CCCCTTTTGCTTTAATGGTGAACGTAAGAAACCCGAGTTGCCTGGCATTTCGCGTGTTTTGTTTAAACATTCTTCTTCAAGATGCTCAGGTCGACAGGCTCGTTGTCACCGTGTCCAGCTGGTTTGCC
ATTTTCTCTGTTACCTCCTGATCTGCCCCTTTGATTCCTACCCGACAGAAGGAAAGATTTCAGGTGTTCAGATTTGGCCACTGCGGTTTCCCTGGAACACCCGCCTCCCACGGCGGCCGTCCCCTTCC
CTTGTTGTCCCTGGGGGGTCCTGACACCGGTTTGCGGTTTTGTACCGGTACTGCTGAGCTTTCCCGTGGGACCTAGGAATCCAGACCCCGTGACGGATGGTGCCACCGATTGTAAATTTCAGCGTGTG
TCACTTTTCTTTTTCTTGTTGAATGGGTTCAAAAAAGCAAAAAACAAAACCCTTTAGAAACTGAATGTGCTGTCACGTTTTGTGGATTGAGGGGCCGCTGAGGACGTCGCGCGGGAGTTTGAGCTGGA
GCCTGAGAGCGGCGTGCGCGCCTGGCTCGTGCTCGCCGCCTGCCTGTGCCGCGCCGTCGCGGGCCCCCCCAGAACGCAGGTGCTTTCTGAAAACTTCACCACAGGCCCTCCGAGTTAAAGTTTAAGCT
GTGCTATTTAGACTCGTATTTAGAACGTGTCACTTTCTCTGAACTGTTACTGCCTGTACAGAGTCACGGCCACAGGGCTGCTTCCCTCTAGGAGGTTACAAGCCTTAATAAACAAAACCTATTTAGCA

hide sequence

RefSeq Acc Id:

XM_021078236 ⟹ XP_020933895

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	17	62,329,302 - 62,337,190 (-)	NCBI

Sequence:

show sequence

CGGCTGATGGGGACGGAGGAATAAAGCGCGCCTTTCCGTCTTCCCTCTTCAGTAACTCAGCCGTGTTCCCGGTGTAACAGACGCGCTTGCTGGTCAGAAGGTCGTTTCCGGGTCCGGTGCTGACCGTG
TGGGGTTCGTGGACGCCTGTCCCGCGCTGTGCTGGGACGCGTCCTCTGAGTAACAGTTACCCCTCCATGGCCGACCCCTACTTGTCCAGCTACTACCCGCCGCCGTCCATCGGATTCCCCTACTCCCT
CAGCGAGGCACCCTGGTCCACTGGCGGGGACCCCCCGATCCCGTACCTCACCACCTACGGCCAGCTCAGTAACGGAGACCATCACTTCATGCATGATGCTGTTTTTGGGCAGCCCGGGGGCCTGGGGA
GCAACATCTACCAGCACAGGTTTAACTTCTTCCCCGAGAACCCCGCCTTCTCGGCCTGGGGCACAAGTGGGTCTCAGGGGCAGCAGGCTCAGAGCTCCGCCTATGGGAGCAGCTACACCTACCCGCCC
AGCTCCCTGGGCGGCACCATTGTGGACGGGCAGGCGGGCTTTCACAGTGACACCCTCAGCAAGGCCCCTGGCGTGAACAGCCTGGAGCAAGGCATGGTGGGCCTGAAGCTCGGGGACGTCACCACCTC
TGCTGTCAAGACGGTGGGGTCGGTGGTCAGCAGCGTGGCCATGACGGGCGTCCTGTCTGGCAGCGGAGGGCCCAGTGTGAACATGCCAGGGTCGAAGCCCACGTCGTGGGCGGCCATTGCCAGCAAGC
CCGCCAAGCCCCAGCCGAAGATGAAGGCCAAGAGTGGACCTGTGATCGGGGCTGCGCTGCCCCCTCCGCCCATAAAGCATAACCTGGACATCGGCACCTGGGACAACAAAGGGCCGGCGCCCAAGGCC
CCCCAGCAGGCGCCGGCCCCCCAGGCGACGCCCCAGCCCCAGCCGGTGGCGCAGCCTCTCCCGGCTCAGCCTCCCCCTTTGGCCCACGCGCAGTATCCAGGCCCCCCTCAGCCGCCCCAGACCCGCTG
GGTCGCCCCTCGCAACAGAAACGCGGCATTCGGGCAGAGCGGCCCCGGCTGCGGTGACAGCAACTCCCCCGGAGGCGCCCCGCCCGGCGCGGCCCCGAGCCTGGAGTCCCACCCCGTCCTTGAGAAGC
TGAAAGCCGCGCACAGCTACAACCCGCGGGAGTTCGACTGGAACCTGAAGAGCGGGCGCGTGTTCATCATCAAGAGCTACTCGGAGGACGACGTGCACCGCTCCATCAAGTACTCCATCTGGTGCAGC
ACGGAGCACGGCAACCGGCGCCTGGACAGCGCCTTCCGCGCGCTGGGCAGCAAGGGGCCCGTCTACCTGCTCTTCAGCGTCAACGGCAGCGGGCACTTCTGCGGGGTGGCCGAGATGAAGTCGCCCGT
GGACTACGGCACCAGCGCCGGGGTCTGGTCTCAGGACAAGTGGAAGGGCAAGTTCGACGTGAAGTGGATCTTCGTCAAGGACGTGCCCAACAACCAGCTCCGGCACATCCGGCTGGAGAACAACGACA
ACAAGCCGGTCACCAACTCCCGCGACACCCAGGAGGTGCCCCTGGAGAAGGCGAAGCAGGTGCTGAAGATCATCGCCTCCTACAAGCACTCCACTTCCATCTTCGACGACTTTTCGCACTACGAGAAG
CGCCAGGAGGAGGAGGAGGTGGTGCGCAAGGAACGGCAGAATCGGAGCAAACAGTGAGGACAGAGCCGTTTCCTGCACCGTCTGACACGGACTGTGGGACCGTGCGCCCGGCACGGCGGAGGGCGTGG
TGCGGGGCGCCGTCCCGGGCGTCGGCCCGGCCGGCCTCGTGCAGGGCTCGAGCGCGCGCGTCTTGCCCTTGTTTGTAGTTTACGTGTGCCCAGAGCGGCCCTCGTCCGTCTGTCCCCTTTCTGTGTGT
CATGGTCGGTGAGCGCTCACGGGGAGGGCGGTTTGTCGGCTGATGGCTCAGACCGCCGGAGCGCTCAGCGTGAGTAGCCGTGAGGACCGAGTCCAGTCCATCCCAAAGATTTATTCTTGTTATCATGG
TTATTTTCGGTGACAATTACGCTCTCGTTCTCACACTCACAGTCATTTGACGTCTTTACACGAGGCTCGTCTCACCCCTTTTGCTTTAATGGTGAACGTAAGAAACCCGAGTTGCCTGGCATTTCGCG
TGTTTTGTTTAAACATTCTTCTTCAAGATGCTCAGGTCGACAGGCTCGTTGTCACCGTGTCCAGCTGGTTTGCCATTTTCTCTGTTACCTCCTGATCTGCCCCTTTGATTCCTACCCGACAGAAGGAA
AGATTTCAGGTGTTCAGATTTGGCCACTGCGGTTTCCCTGGAACACCCGCCTCCCACGGCGGCCGTCCCCTTCCCTTGTTGTCCCTGGGGGGTCCTGACACCGGTTTGCGGTTTTGTACCGGTACTGC
TGAGCTTTCCCGTGGGACCTAGGAATCCAGACCCCGTGACGGATGGTGCCACCGATTGTAAATTTCAGCGTGTGTCACTTTTCTTTTTCTTGTTGAATGGGTTCAAAAAAGCAAAAAACAAAACCCTT
TAGAAACTGAATGTGCTGTCACGTTTTGTGGATTGAGGGGCCGCTGAGGACGTCGCGCGGGAGTTTGAGCTGGAGCCTGAGAGCGGCGTGCGCGCCTGGCTCGTGCTCGCCGCCTGCCTGTGCCGCGC
CGTCGCGGGCCCCCCCAGAACGCAGGTGCTTTCTGAAAACTTCACCACAGGCCCTCCGAGTTAAAGTTTAAGCTGTGCTATTTAGACTCGTATTTAGAACGTGTCACTTTCTCTGAACTGTTACTGCC
TGTACAGAGTCACGGCCACAGGGCTGCTTCCCTCTAGGAGGTTACAAGCCTTAATAAACAAAACCTATTTAGCA

hide sequence


Protein RefSeqs	XP_020933894	(Get FASTA)	NCBI Sequence Viewer
	XP_020933895	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000031181.2
	ENSSSCP00000038189
	ENSSSCP00000038189.1
	ENSSSCP00000062608.1
	ENSSSCP00000073999.1
	ENSSSCP00025035097.1
	ENSSSCP00025035148.1
	ENSSSCP00025035192.1
	ENSSSCP00025035231.1
	ENSSSCP00030016879.1
	ENSSSCP00030016885.1
	ENSSSCP00030016888.1
	ENSSSCP00030016895.1
	ENSSSCP00035008246.1
	ENSSSCP00035008248.1
	ENSSSCP00035008250.1
	ENSSSCP00035008253.1
	ENSSSCP00040029957.1
	ENSSSCP00040030023.1
	ENSSSCP00040030042.1
	ENSSSCP00040030094.1
	ENSSSCP00045023937.1
	ENSSSCP00045023974.1
	ENSSSCP00045024015.1
	ENSSSCP00045024052.1
	ENSSSCP00050036874.1
	ENSSSCP00050036877.1
	ENSSSCP00050036882.1
	ENSSSCP00055017086.1
	ENSSSCP00055017108.1
	ENSSSCP00055017137.1
	ENSSSCP00060021657.1
	ENSSSCP00060021658.1
	ENSSSCP00060021660.1
	ENSSSCP00060021662.1
	ENSSSCP00065018128.1
	ENSSSCP00065018137.1
	ENSSSCP00065018140.1
	ENSSSCP00065018142.1
	ENSSSCP00070002797.1
	ENSSSCP00070002818.1
	ENSSSCP00070002827.1

RefSeq Acc Id:	XP_020933894 ⟸ XM_021078235
- Peptide Label:	isoform X1
- UniProtKB:	A0A287A2P3 (UniProtKB/TrEMBL), A0A4X1SK49 (UniProtKB/TrEMBL), A0A8D1Y9C6 (UniProtKB/TrEMBL), M3VK41 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSATSVDPQRTKGQDTKVQNGSLHQKDSVHDSDFEPYLSGQSNQSNSYPSMADPYLSSYYPPPSIGFPYSLSEAPWSTGGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGSNIYQHRFNFFPENP AFSAWGTSGSQGQQAQSSAYGSSYTYPPSSLGGTIVDGQAGFHSDTLSKAPGVNSLEQGMVGLKLGDVTTSAVKTVGSVVSSVAMTGVLSGSGGPSVNMPGSKPTSWAAIASKPAKPQPKMKAKSGPV IGAALPPPPIKHNLDIGTWDNKGPAPKAPQQAPAPQATPQPQPVAQPLPAQPPPLAHAQYPGPPQPPQTRWVAPRNRNAAFGQSGPGCGDSNSPGGAPPGAAPSLESHPVLEKLKAAHSYNPREFDWN LKSGRVFIIKSYSEDDVHRSIKYSIWCSTEHGNRRLDSAFRALGSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPL EKAKQVLKIIASYKHSTSIFDDFSHYEKRQEEEEVVRKERQNRSKQ hide sequence

RefSeq Acc Id:	XP_020933895 ⟸ XM_021078236
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1Y9C6 (UniProtKB/TrEMBL), M3VK41 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADPYLSSYYPPPSIGFPYSLSEAPWSTGGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGS NIYQHRFNFFPENPAFSAWGTSGSQGQQAQSSAYGSSYTYPPSSLGGTIVDGQAGFHSDTLSKAPGVNSLEQGMVGLKLGDVTTSAVKTVGSVVSSVAMTGVLSGSGGPSVNMPGSKPTSWAAIASKP AKPQPKMKAKSGPVIGAALPPPPIKHNLDIGTWDNKGPAPKAPQQAPAPQATPQPQPVAQPLPAQPPPLAHAQYPGPPQPPQTRWVAPRNRNAAFGQSGPGCGDSNSPGGAPPGAAPSLESHPVLEKL KAAHSYNPREFDWNLKSGRVFIIKSYSEDDVHRSIKYSIWCSTEHGNRRLDSAFRALGSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDN KPVTNSRDTQEVPLEKAKQVLKIIASYKHSTSIFDDFSHYEKRQEEEEVVRKERQNRSKQ hide sequence

Ensembl Acc Id:

ENSSSCP00000031181 ⟸ ENSSSCT00000049062

Ensembl Acc Id:

ENSSSCP00000062608 ⟸ ENSSSCT00000069497

Ensembl Acc Id:

ENSSSCP00000073999 ⟸ ENSSSCT00000069911

Protein Domains

YTH

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000040086	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025058952	UniProtKB/TrEMBL
	ENSSSCG00030026389	UniProtKB/TrEMBL
	ENSSSCG00035017476	UniProtKB/TrEMBL
	ENSSSCG00040052031	UniProtKB/TrEMBL
	ENSSSCG00045020230	UniProtKB/TrEMBL
	ENSSSCG00050063081	UniProtKB/TrEMBL
	ENSSSCG00055010953	UniProtKB/TrEMBL
	ENSSSCG00060037444	UniProtKB/TrEMBL
	ENSSSCG00065031547	UniProtKB/TrEMBL
	ENSSSCG00070001802	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000049062.3	UniProtKB/TrEMBL
	ENSSSCT00000066311	ENTREZGENE
	ENSSSCT00000066311.3	UniProtKB/TrEMBL
	ENSSSCT00000069497.1	UniProtKB/TrEMBL
	ENSSSCT00000069911.2	UniProtKB/TrEMBL
	ENSSSCT00025080730.1	UniProtKB/TrEMBL
	ENSSSCT00025080837.1	UniProtKB/TrEMBL
	ENSSSCT00025080947.1	UniProtKB/TrEMBL
	ENSSSCT00025081050.1	UniProtKB/TrEMBL
	ENSSSCT00030036872.1	UniProtKB/TrEMBL
	ENSSSCT00030036891.1	UniProtKB/TrEMBL
	ENSSSCT00030036898.1	UniProtKB/TrEMBL
	ENSSSCT00030036907.1	UniProtKB/TrEMBL
	ENSSSCT00035022457.1	UniProtKB/TrEMBL
	ENSSSCT00035022463.1	UniProtKB/TrEMBL
	ENSSSCT00035022468.1	UniProtKB/TrEMBL
	ENSSSCT00035022472.1	UniProtKB/TrEMBL
	ENSSSCT00040070341.1	UniProtKB/TrEMBL
	ENSSSCT00040070489.1	UniProtKB/TrEMBL
	ENSSSCT00040070535.1	UniProtKB/TrEMBL
	ENSSSCT00040070639.1	UniProtKB/TrEMBL
	ENSSSCT00045034509.1	UniProtKB/TrEMBL
	ENSSSCT00045034563.1	UniProtKB/TrEMBL
	ENSSSCT00045034623.1	UniProtKB/TrEMBL
	ENSSSCT00045034682.1	UniProtKB/TrEMBL
	ENSSSCT00050085905.1	UniProtKB/TrEMBL
	ENSSSCT00050085909.1	UniProtKB/TrEMBL
	ENSSSCT00050085915.1	UniProtKB/TrEMBL
	ENSSSCT00055021567.1	UniProtKB/TrEMBL
	ENSSSCT00055021597.1	UniProtKB/TrEMBL
	ENSSSCT00055021635.1	UniProtKB/TrEMBL
	ENSSSCT00060050690.1	UniProtKB/TrEMBL
	ENSSSCT00060050696.1	UniProtKB/TrEMBL
	ENSSSCT00060050699.1	UniProtKB/TrEMBL
	ENSSSCT00060050705.1	UniProtKB/TrEMBL
	ENSSSCT00065042707.1	UniProtKB/TrEMBL
	ENSSSCT00065042720.1	UniProtKB/TrEMBL
	ENSSSCT00065042725.1	UniProtKB/TrEMBL
	ENSSSCT00065042729.1	UniProtKB/TrEMBL
	ENSSSCT00070003376.1	UniProtKB/TrEMBL
	ENSSSCT00070003401.1	UniProtKB/TrEMBL
	ENSSSCT00070003413.1	UniProtKB/TrEMBL
Gene3D-CATH	ph1033 like domains	UniProtKB/TrEMBL
InterPro	YTH_domain	UniProtKB/TrEMBL
	YTH_prot	UniProtKB/TrEMBL
NCBI Gene	YTHDF1	ENTREZGENE
PANTHER	PTHR12357	UniProtKB/TrEMBL
	YTH DOMAIN-CONTAINING FAMILY PROTEIN 1	UniProtKB/TrEMBL
Pfam	YTH	UniProtKB/TrEMBL
PROSITE	YTH	UniProtKB/TrEMBL
Superfamily-SCOP	beta-sandwich domain of Sec23/24	UniProtKB/TrEMBL
UniProt	A0A286ZI96_PIG	UniProtKB/TrEMBL
	A0A287A2P3	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SK49	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SK94_PIG	UniProtKB/TrEMBL
	A0A4X1SKC3_PIG	UniProtKB/TrEMBL
	A0A5G2QEJ5_PIG	UniProtKB/TrEMBL
	A0A5G2R9M2_PIG	UniProtKB/TrEMBL
	A0A7H1RGN4_PIG	UniProtKB/TrEMBL
	A0A8D0T2N5_PIG	UniProtKB/TrEMBL
	A0A8D0W908_PIG	UniProtKB/TrEMBL
	A0A8D1EZG5_PIG	UniProtKB/TrEMBL
	A0A8D1Y9C6	ENTREZGENE, UniProtKB/TrEMBL
	M3VK41	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:95681	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-01-30	YTHDF1	YTH N6-methyladenosine RNA binding protein F1	YTHDF1	YTH N6-methyladenosine RNA binding protein 1	Symbol and/or name change	19259463	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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