Gene: CABP4 (calcium binding protein 4) Sus scrofa

Analyze

Symbol:

CABP4

Name:

calcium binding protein 4

RGD ID:

14103802

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); transmembrane transporter binding (inferred); INVOLVED IN photoreceptor cell morphogenesis (ortholog); phototransduction (ortholog); retinal bipolar neuron differentiation (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH achromatopsia (ortholog); congenital stationary night blindness (ortholog); Congenital Stationary Night Blindness 2B (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); presynapse (inferred)

Type:

protein-coding

Previously known as:

calcium-binding protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CABP4 (calcium binding protein 4)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cabp4 (calcium binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cabp4 (calcium binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cabp4 (calcium binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CABP4 (calcium binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CABP4 (calcium binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cabp4 (calcium binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103217640 (calcium-binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cabp4 (calcium binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

NCBI Annotation Information:

Genome Annotation Status: not in current annotation release

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	5,068,037 - 5,072,188 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	2	5,068,535 - 5,079,482 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	3,787,145 - 3,794,983 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

achromatopsia (ISO)

congenital stationary night blindness (ISO)

Congenital Stationary Night Blindness 2B (ISO)

COVID-19 (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

optic atrophy (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

photoreceptor cell morphogenesis (ISO)

phototransduction (IBA,ISO)

retinal bipolar neuron differentiation (ISO)

retinal cone cell development (ISO)

sensory perception of sound (IBA)

visual perception (IBA,IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

presynapse (IEA)

Molecular Function

calcium channel regulator activity (IBA)

calcium ion binding (IEA)

transmembrane transporter binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

calcium/calcium-mediated signaling pathway (ISO)

References

Genomics

Comparative Map Data

CABP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	5,068,037 - 5,072,188 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	2	5,068,535 - 5,079,482 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	3,787,145 - 3,794,983 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CABP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	67,452,403 - 67,461,752 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	67,452,406 - 67,461,752 (+)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	11	67,219,874 - 67,229,223 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	66,979,394 - 66,983,267 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	66,979,393 - 66,983,261	NCBI
Celera	11	64,556,021 - 64,562,452 (+)	NCBI		Celera
Cytogenetic Map	11	q13.2	NCBI
HuRef	11	63,552,383 - 63,558,814 (+)	NCBI		HuRef
CHM1_1	11	67,105,863 - 67,112,290 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	67,446,523 - 67,455,877 (+)	NCBI		T2T-CHM13v2.0

Cabp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	4,185,422 - 4,189,608 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	4,185,422 - 4,194,032 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	4,135,423 - 4,144,080 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	4,135,423 - 4,144,033 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	19	4,135,423 - 4,139,609 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	4,135,423 - 4,139,609 (-)	NCBI		MGSCv36	mm8
Celera	19	4,006,268 - 4,010,454 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	3.84	NCBI

Cabp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	210,857,223 - 210,872,431 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	210,858,133 - 210,862,632 (-)	Ensembl				GRCr8
mRatBN7.2	1	201,428,671 - 201,442,950 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	201,428,672 - 201,433,172 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	209,780,905 - 209,785,404 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	216,874,134 - 216,878,633 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	209,565,147 - 209,569,646 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	210,221,441 - 210,225,940 (-)	NCBI
Lyon_Normotensive	1	215,130,206 - 215,134,705 (-)	NCBI
Lyon_Hypertensive	1	211,882,406 - 211,886,905 (-)	NCBI
F344_StmMcwi	1	210,118,665 - 210,123,158 (-)	NCBI
Rnor_6.0	1	219,383,452 - 219,388,009 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	219,383,452 - 219,388,009 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	1	226,254,102 - 226,259,991 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	206,718,302 - 206,722,801 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	198,973,082 - 198,977,581 (-)	NCBI		Celera
RGSC_v3.1	1	206,872,324 - 206,876,197 (-)	NCBI
Cytogenetic Map	1	q43	NCBI

Cabp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	18,023,639 - 18,028,845 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955422	18,023,639 - 18,028,845 (-)	NCBI	ChiLan1.0	ChiLan1.0

CABP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	68,682,305 - 68,690,527 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	69,724,899 - 69,733,701 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	62,813,477 - 62,820,425 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	66,121,992 - 66,128,785 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	66,121,992 - 66,128,758 (+)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

CABP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	50,014,698 - 50,017,854 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	50,014,698 - 50,017,854 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	48,625,236 - 48,628,392 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	50,936,942 - 50,940,098 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	50,936,942 - 50,940,098 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	50,150,295 - 50,153,451 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	49,724,784 - 49,727,943 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	50,519,290 - 50,522,446 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cabp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	5,676,187 - 5,681,263 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	5,852,102 - 5,858,657 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	2,293,000 - 2,300,322 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	2,295,124 - 2,299,558 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103217640
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	1	6,781,295 - 6,787,559 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666038	104,089,770 - 104,094,170 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	1	6,804,761 - 6,810,277 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	6,805,193 - 6,808,456 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Cabp4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	3,502,653 - 3,507,269 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in CABP4
533 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system
1	3	1	2	1	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021082754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021082755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	GFLN01049031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000014109 ⟹ ENSSSCP00000013723

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	5,068,037 - 5,072,188 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000076449 ⟹ ENSSSCP00000065271

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	5,069,211 - 5,072,188 (-)	Ensembl

RefSeq Acc Id:

XM_021082754 ⟹ XP_020938413

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	5,068,535 - 5,072,697 (-)	NCBI

Sequence:

show sequence

TCGAACCATATCCTCATGGATATCAGCTGGATTCGTAACCCACTGAGCCACAACAGGAACCCAC
CTCCAGCCTTTGCCCACAGTCCTCTTCTGCCCGAGACACTGTCCTCGCCCTGCCTTAGCTAAGT
CCTGCCCACATCATGCAAGTGGGCAGAGTCTTGACTTTTCAGCAGGATTGCCCCCATTTTATAG
ATGAAGCAACTGAGGCTTAGAGGGGAATTTGCTGGGGCTCCCAGCTCCTAAGTGGCAGAGCTGG
AGTCCAAAACTCACGGCAGCCACCTGTGTTGCTGAGGCCAGTTCCCTTGACGCATCAGGCTCTG
TCCTGGTCGCCCCCAGGCAGAGGGCTGGGATTAGGGCCTGGGCTGCCTGCCTCACTTACCCTAA
TCCCCTCAGGGCCCGATCCCTGGCCCGCAGTGTTCAGGGTGGCAGTGCATAAGCAGCTTTATGG
GTTCCGAGAGGCAGGGCTGCTCCCTGGTGCTGCATCTTTGAGCCCTGTCACCCCTTTCCACATG
GCCACAGAGCAGCGGGGGGAGCAGCATGGGGCCCCCCAGCAGCCCCCTGGGGGGGTCGAAGCTT
CTGGTAGAGGTGCTGAGGGGCTTCCCTTGACCAGGAGGAGGAGCAGCAAGAAGAAGGGGCTCCG
AGGGTCCCGGAAGGACTCCGGCAGCTCTGGGGAACAGCCCCCGCCACAGGGCCCTGAGGCCCCG
GAGAGCAGCAAGAACCCATCTAGGACCAGAGAAGGGCAGGAGGGACCAGGCCCTGTGGCCCCTG
CACTGGCCTCTCGTCGCCAGTCCCACCGGCACCGTCCTGCCTCCCAGCACGATGCTGCTCAGAG
GACGTACGGGCCCCTGCTGAACCGCATCTTCGGGAAGGACCGAGAGCTGGGCCCCGAGGAGCTG
GACGAGCTTCGGGCCGCCTTCGAGGAGTTTGACACGGACCACGACGGCCACATCGGCTACCGGG
AGCTGGGCGAGTGCATGCGCACGCTGGGCTACATGCCCACGGAGATGGAGCTCATCGAGGTCTC
CCAGCACGTCAAGATGCGAATGGGTGGCCGCGTGGACTTCGAGGAGTTTGTGGAGATGATGGGC
CCGAAGCTGAGGGAGGAGACCGCACACATGCTGGGTGTGCGGGAGCTGCGCATCGCCTTCCGAG
AGTTTGACAGGGACAGGGATGGACGAATCACCGTGGCAGAACTGCGACAGGCAGCACCCGCTCT
GCTGGGGGAGCCACTGGCGGGCTCTGAGCTGGACGAGATGCTCCGAGAAGTGGATCTCAATGGG
GACGGCACTGTAGATTTTGACGAGTTTGTGATGATGCTTTGCACTCACTGAGGCCCCCTCCGGC
CCCAGACTCCAACAAGCATCATGCCGCACACCCTCGGCCCCGAGGTCCCAGGATGAAAGAGACC
CAGCAGCCCCAGGCTTCTTCTGCTCCTGCAACATCTGGCTGGAGAGTTGGCCCCGGACGTCACC
TACCCGCCCTCGTCCTCACCTCCCTCCTGCTCAAGCTGCCTGGAGGAAACCAGCCCTTAAGCTC
CCATCATTCCCTGTGTGAGCAAGATTTGGGGTCTCTCCAACCCTTGGGAGGTAGGGTGCTCCCT
GGCACTGCGGGCATTCGAAGACGGGGCAGTGTAGTGGGGGATTCTGGTAACACGCTGAATTGAG
AGGGTGGCTGGATGCCTCTCACTACTTATATGTAGAATTTTTTTTTTAAGCTGAACTTGAAAGA
AAAGGATGACCTCAGGGACCAAAGACAAAGAGAGAACAGAAAGCTGGGTGGTCGAGGGAGCAGA
TGCCGCGGGGGCTGCAGAGAGGTTTGGGAGCCTGGGCTCTGACACCCAGGAGGGGACAAAAGAC
ATGACGTCACCCAGTATATTTTAGGGTCTCAACGGGCTACCCTGTTCTTGAAAAGGGGAACAGG
AGTTCCCGTTGTGGCTGGGGGGTTAAGAACCTGAATAGTATCCATGAGGACGTGGGTTTGATCC
TTA

hide sequence

RefSeq Acc Id:

XM_021082755 ⟹ XP_020938414

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	5,068,535 - 5,079,482 (-)	NCBI

Sequence:

show sequence

ATGTTTCCTCCAGCACAAAACCCTCCTCTGTGGGTCAGCAGGAGAACTCCTCTTTATCTCACAA
AACCCTTCATGGCACTGCTCTTTCTCCCAGATAGCAAGTACCCATTAGGAGTGGGGTTCTGGGA
CCTCGGAGGGGGAGCTGGCCCACTCTCCAAGAGGTGGGACTTGGAGTAGGCCCCAGAGTTGTAG
ACAGGTGGCTGGCACGGAGGTTTTAGTGCCTGATCTGCCTGCCATGTGAAAAGGCTTTGAGACC
CCTGTCTGGGAAAAGGAAGAGGAACATTCTGCCTGGGGGACAGAAGTCCAGACCCTGGCCTCAG
GAAGGGTGCATTCAGTGCGGTGGGGAGTGTGGAAGCGTTTGGAAAGTGGAAGAGGAGGCTGTGG
GAGGTGAGGGCAATGCCTGGTGGGCAGGATGCTGCCACGTGGGCTCTGGTGGGGCAGTGCTGGT
CCCAGGCCAAGAGTGAGGCCTGGGGGTGTCTAGGGGTACAATCAAATTCATGGCTAACAATTAT
TGAGCGTTTACACTGTGCCAGACAAGGATCCAAGCGTTTTCATAGGGATTAAGCACTCCTAGAA
AACGGAACCGTTGTTAAGATCCCATTTCACAGATGAGGAAACTGAGTCCCAAAGAGGCCAAGAG
CCAGCAGGTGAGTGGTAGAGAGCCAGGATGCAAACAACCTCTAGGGGCCACTCCCCAATCCCCC
CTCAAAATGGAAGGCTGGCTGGAAAAGCACCAACAAGCCCAACAAGTGCTCATTACATATTGGC
TGGGTAAATGAATTTAGCAAATCTGTGTCTGTCCAGAGATCACTCTCCCACTGGCCTCAGTGCC
CATGGTTCTAGGAAGTGCTACGATTATTCTGCTGGTCTCACACCCCCCAGCAGCAGCGCCAGCA
TGCTTCTGTCCCCGTCCCGTCCCGTCCCCGGGTGAAGTTAAAGATCACAACAGCCAAATGTGTA
AGGGGAACATTCTGACCCTGTTTCACAGAGGAGAAAACTGAGGCGAAGAGCAACCTCGGAACCA
GAACCCGGATCTGATTGCACCACTTCGGTCTGGCTGGACAGCCTGCTGCCTTTGAAAAATGCAA
GCCCCCCACCCCGGGAAGGGCAGCATGTAAAAGGTCCTTGTCATTTATACCTACTGGGAAAGAG
AGGAAGGTTCCATGACTTGCCCAAGCTCAGAGGACGGAATGCGGGCACCAGGACTCACTCCTCG
GCAACGAACTATTCCCAGGAAACTAACCATGCTCCTGCAGGGACCCCCACTGCGACCAGGCAGA
TGAAACCGGAGGCTTTCAAATACATCTCAGTAACATATGATAGCAGAACTCCACGATGGCACGA
GGAGGAGGAGCAGCAAGAAGAAGGGGCTCCGAGGGTCCCGGAAGGACTCCGGCAGCTCTGGGGA
ACAGCCCCCGCCACAGGGCCCTGAGGCCCCGGAGAGCAGCAAGAACCCATCTAGGACCAGAGAA
GGGCAGGAGGGACCAGGCCCTGTGGCCCCTGCACTGGCCTCTCGTCGCCAGTCCCACCGGCACC
GTCCTGCCTCCCAGCACGATGCTGCTCAGAGGACGTACGGGCCCCTGCTGAACCGCATCTTCGG
GAAGGACCGAGAGCTGGGCCCCGAGGAGCTGGACGAGCTTCGGGCCGCCTTCGAGGAGTTTGAC
ACGGACCACGACGGCCACATCGGCTACCGGGAGCTGGGCGAGTGCATGCGCACGCTGGGCTACA
TGCCCACGGAGATGGAGCTCATCGAGGTCTCCCAGCACGTCAAGATGCGAATGGGTGGCCGCGT
GGACTTCGAGGAGTTTGTGGAGATGATGGGCCCGAAGCTGAGGGAGGAGACCGCACACATGCTG
GGTGTGCGGGAGCTGCGCATCGCCTTCCGAGAGTTTGACAGGGACAGGGATGGACGAATCACCG
TGGCAGAACTGCGACAGGCAGCACCCGCTCTGCTGGGGGAGCCACTGGCGGGCTCTGAGCTGGA
CGAGATGCTCCGAGAAGTGGATCTCAATGGGGACGGCACTGTAGATTTTGACGAGTTTGTGATG
ATGCTTTGCACTCACTGAGGCCCCCTCCGGCCCCAGACTCCAACAAGCATCATGCCGCACACCC
TCGGCCCCGAGGTCCCAGGATGAAAGAGACCCAGCAGCCCCAGGCTTCTTCTGCTCCTGCAACA
TCTGGCTGGAGAGTTGGCCCCGGACGTCACCTACCCGCCCTCGTCCTCACCTCCCTCCTGCTCA
AGCTGCCTGGAGGAAACCAGCCCTTAAGCTCCCATCATTCCCTGTGTGAGCAAGATTTGGGGTC
TCTCCAACCCTTGGGAGGTAGGGTGCTCCCTGGCACTGCGGGCATTCGAAGACGGGGCAGTGTA
GTGGGGGATTCTGGTAACACGCTGAATTGAGAGGGTGGCTGGATGCCTCTCACTACTTATATGT
AGAATTTTTTTTTTAAGCTGAACTTGAAAGAAAAGGATGACCTCAGGGACCAAAGACAAAGAGA
GAACAGAAAGCTGGGTGGTCGAGGGAGCAGATGCCGCGGGGGCTGCAGAGAGGTTTGGGAGCCT
GGGCTCTGACACCCAGGAGGGGACAAAAGACATGACGTCACCCAGTATATTTTAGGGTCTCAAC
GGGCTACCCTGTTCTTGAAAAGGGGAACAGGAGTTCCCGTTGTGGCTGGGGGGTTAAGAACCTG
AATAGTATCCATGAGGACGTGGGTTTGATCCTTA

hide sequence

Protein Sequences


Ensembl Protein	ENSSSCP00000013723.2
	ENSSSCP00000065271.1

RefSeq Acc Id:

XP_020938414 ⟸ XM_021082755

- Peptide Label:

isoform X2

- Sequence:

show sequence

MIAELHDGTRRRSSKKKGLRGSRKDSGSSGEQPPPQGPEAPESSKNPSRTREGQEGPGPVAPAL
ASRRQSHRHRPASQHDAAQRTYGPLLNRIFGKDRELGPEELDELRAAFEEFDTDHDGHIGYREL
GECMRTLGYMPTEMELIEVSQHVKMRMGGRVDFEEFVEMMGPKLREETAHMLGVRELRIAFREF
DRDRDGRITVAELRQAAPALLGEPLAGSELDEMLREVDLNGDGTVDFDEFVMMLCTH

hide sequence

RefSeq Acc Id:

XP_020938413 ⟸ XM_021082754

- Peptide Label:

isoform X1

- Sequence:

show sequence

MATEQRGEQHGAPQQPPGGVEASGRGAEGLPLTRRRSSKKKGLRGSRKDSGSSGEQPPPQGPEA
PESSKNPSRTREGQEGPGPVAPALASRRQSHRHRPASQHDAAQRTYGPLLNRIFGKDRELGPEE
LDELRAAFEEFDTDHDGHIGYRELGECMRTLGYMPTEMELIEVSQHVKMRMGGRVDFEEFVEMM
GPKLREETAHMLGVRELRIAFREFDRDRDGRITVAELRQAAPALLGEPLAGSELDEMLREVDLN
GDGTVDFDEFVMMLCTH

hide sequence

Ensembl Acc Id:

ENSSSCP00000065271 ⟸ ENSSSCT00000076449

Ensembl Acc Id:

ENSSSCP00000013723 ⟸ ENSSSCT00000014109

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000012906	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000014109.2	UniProtKB/TrEMBL
	ENSSSCT00000076449.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	CaBP1/2/4/5	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
NCBI Gene	CABP4	ENTREZGENE
PANTHER	PTHR45917	UniProtKB/TrEMBL
	PTHR45917:SF4	UniProtKB/TrEMBL
Pfam	EF-hand_1	UniProtKB/TrEMBL
	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A5G2QL39_PIG	UniProtKB/TrEMBL
	F1RUZ4_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:86111	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations