CABP4 (calcium binding protein 4) - Rat Genome Database

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Gene: CABP4 (calcium binding protein 4) Canis lupus familiaris
Analyze
Symbol: CABP4
Name: calcium binding protein 4
RGD ID: 12206621
Description: ENCODES a protein that exhibits calcium channel regulator activity (inferred); calcium ion binding (inferred); transmembrane transporter binding (inferred); INVOLVED IN photoreceptor cell morphogenesis (ortholog); phototransduction (ortholog); retinal bipolar neuron differentiation (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH achromatopsia (ortholog); congenital stationary night blindness (ortholog); Congenital Stationary Night Blindness 2B (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); presynapse (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,014,698 - 50,017,854 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,014,698 - 50,017,854 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1848,625,236 - 48,628,392 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01850,936,942 - 50,940,098 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,936,942 - 50,940,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,150,295 - 50,153,451 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,724,784 - 49,727,943 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,519,290 - 50,522,446 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
presynapse  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CABP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,014,698 - 50,017,854 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,014,698 - 50,017,854 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1848,625,236 - 48,628,392 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01850,936,942 - 50,940,098 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,936,942 - 50,940,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,150,295 - 50,153,451 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,724,784 - 49,727,943 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,519,290 - 50,522,446 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CABP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,452,403 - 67,461,752 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,452,406 - 67,461,752 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371167,219,874 - 67,229,223 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,979,394 - 66,983,267 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341166,979,393 - 66,983,261NCBI
Celera1164,556,021 - 64,562,452 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1163,552,383 - 63,558,814 (+)NCBIHuRef
CHM1_11167,105,863 - 67,112,290 (+)NCBICHM1_1
T2T-CHM13v2.01167,446,523 - 67,455,877 (+)NCBIT2T-CHM13v2.0
Cabp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,185,422 - 4,189,608 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,185,422 - 4,194,032 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38194,135,423 - 4,144,080 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,135,423 - 4,144,033 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37194,135,423 - 4,139,609 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36194,135,423 - 4,139,609 (-)NCBIMGSCv36mm8
Celera194,006,268 - 4,010,454 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.84NCBI
Cabp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,857,223 - 210,872,431 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1210,858,133 - 210,862,632 (-)EnsemblGRCr8
mRatBN7.21201,428,671 - 201,442,950 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,428,672 - 201,433,172 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1209,780,905 - 209,785,404 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,874,134 - 216,878,633 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,565,147 - 209,569,646 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1210,221,441 - 210,225,940 (-)NCBI
Lyon_Normotensive1215,130,206 - 215,134,705 (-)NCBI
Lyon_Hypertensive1211,882,406 - 211,886,905 (-)NCBI
F344_StmMcwi1210,118,665 - 210,123,158 (-)NCBI
Rnor_6.01219,383,452 - 219,388,009 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,383,452 - 219,388,009 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01226,254,102 - 226,259,991 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41206,718,302 - 206,722,801 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1198,973,082 - 198,977,581 (-)NCBICelera
RGSC_v3.11206,872,324 - 206,876,197 (-)NCBI
Cytogenetic Map1q43NCBI
Cabp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,023,639 - 18,028,845 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495542218,023,639 - 18,028,845 (-)NCBIChiLan1.0ChiLan1.0
CABP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,682,305 - 68,690,527 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,724,899 - 69,733,701 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,813,477 - 62,820,425 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,121,992 - 66,128,785 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,121,992 - 66,128,758 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
Cabp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap145,676,187 - 5,681,263 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_0244049475,852,102 - 5,858,657 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,293,000 - 2,300,322 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,295,124 - 2,299,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CABP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,068,037 - 5,072,188 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.125,068,535 - 5,079,482 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,787,145 - 3,794,983 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103217640
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap116,781,295 - 6,787,559 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666038104,089,770 - 104,094,170 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.116,804,761 - 6,810,277 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl16,805,193 - 6,808,456 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Cabp4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v123,502,653 - 3,507,269 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in CABP4
33 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
nervous system
reproductive system
2 1 2 1

Sequence


Ensembl Acc Id: ENSCAFT00000018324   ⟹   ENSCAFP00000016971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1850,014,698 - 50,017,854 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000093252   ⟹   ENSCAFP00000065098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1850,014,698 - 50,017,128 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845017586   ⟹   ENSCAFP00845013690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1850,936,942 - 50,940,098 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845017618   ⟹   ENSCAFP00845013716
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1850,936,942 - 50,939,372 (-)Ensembl
RefSeq Acc Id: XM_038423545   ⟹   XP_038279473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01850,936,942 - 50,940,098 (-)NCBI
RefSeq Acc Id: XM_038501808   ⟹   XP_038357736
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11850,150,295 - 50,153,451 (-)NCBI
RefSeq Acc Id: XM_038562503   ⟹   XP_038418431
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01850,519,290 - 50,522,446 (-)NCBI
RefSeq Acc Id: XM_038626599   ⟹   XP_038482527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01849,724,784 - 49,727,943 (-)NCBI
RefSeq Acc Id: XM_540815   ⟹   XP_540815
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11850,014,698 - 50,017,854 (-)NCBI
Dog10K_Boxer_Tasha1848,625,236 - 48,628,392 (-)NCBI
Sequence:
RefSeq Acc Id: XP_540815   ⟸   XM_540815
- UniProtKB: A0A8C0JKV5 (UniProtKB/TrEMBL),   A0A8I3NC58 (UniProtKB/TrEMBL),   A0A8C0JKU4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000065098   ⟸   ENSCAFT00000093252
Ensembl Acc Id: ENSCAFP00000016971   ⟸   ENSCAFT00000018324
RefSeq Acc Id: XP_038357736   ⟸   XM_038501808
RefSeq Acc Id: XP_038482527   ⟸   XM_038626599
RefSeq Acc Id: XP_038279473   ⟸   XM_038423545
- UniProtKB: A0A8C0JKV5 (UniProtKB/TrEMBL),   A0A8I3NC58 (UniProtKB/TrEMBL),   A0A8C0JKU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418431   ⟸   XM_038562503
- UniProtKB: A0A8C0JKU4 (UniProtKB/TrEMBL),   A0A8C0JKV5 (UniProtKB/TrEMBL),   A0A8I3NC58 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845013690   ⟸   ENSCAFT00845017586
Ensembl Acc Id: ENSCAFP00845013716   ⟸   ENSCAFT00845017618
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011547 Ensembl
  ENSCAFG00845009983 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845017586 ENTREZGENE
  ENSCAFT00845017586.1 UniProtKB/TrEMBL
  ENSCAFT00845017618.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro CaBP1/2/4/5 UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report cfa:483694 UniProtKB/TrEMBL
NCBI Gene CABP4 ENTREZGENE
PANTHER PTHR45917 UniProtKB/TrEMBL
  PTHR45917:SF4 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0JKU4 ENTREZGENE
  A0A8C0JKV5 ENTREZGENE
  A0A8I3N8Q0_CANLF UniProtKB/TrEMBL
  A0A8I3NC58 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38625 ENTREZGENE