TASL (TLR adaptor interacting with endolysosomal SLC15A4) - Rat Genome Database

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Gene: TASL (TLR adaptor interacting with endolysosomal SLC15A4) Sus scrofa
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Symbol: TASL
Name: TLR adaptor interacting with endolysosomal SLC15A4
RGD ID: 14095191
Description: INVOLVED IN positive regulation of innate immune response (inferred); positive regulation of toll-like receptor 7 signaling pathway (inferred); positive regulation of toll-like receptor 8 signaling pathway (inferred); ASSOCIATED WITH autistic disorder (ortholog); Duchenne muscular dystrophy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (inferred); endolysosome membrane (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome X CXorf21 homolog; CXHXorf21; uncharacterized protein CXorf21 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX26,365,027 - 26,384,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X26,363,808 - 26,384,933 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X28,635,141 - 28,651,261 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TASL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX26,365,027 - 26,384,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X26,363,808 - 26,384,933 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X28,635,141 - 28,651,261 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TASL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X30,558,809 - 30,577,766 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX30,558,809 - 30,577,766 (-)EnsemblGRCh38hg38GRCh38
GRCh37X30,576,926 - 30,595,883 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X30,486,862 - 30,505,835 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X30,336,597 - 30,355,571NCBI
CeleraX34,698,462 - 34,717,597 (-)NCBICelera
Cytogenetic MapXp21.2NCBI
HuRefX28,314,203 - 28,333,300 (-)NCBIHuRef
CHM1_1X30,607,829 - 30,626,921 (-)NCBICHM1_1
T2T-CHM13v2.0X30,150,830 - 30,169,806 (-)NCBIT2T-CHM13v2.0
Tasl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X84,820,445 - 84,935,105 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX84,913,960 - 84,935,105 (+)EnsemblGRCm39 Ensembl
GRCm38X85,776,968 - 85,891,499 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX85,870,354 - 85,891,499 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X83,115,612 - 83,136,838 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X82,122,992 - 82,144,218 (+)NCBIMGSCv36mm8
CeleraX77,064,940 - 77,086,117 (+)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX39.39NCBI
Tasl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X54,354,755 - 54,373,930 (+)NCBIGRCr8
mRatBN7.2X50,403,962 - 50,423,141 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX50,361,248 - 50,423,269 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX51,733,739 - 51,752,906 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X55,234,110 - 55,253,281 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X52,865,125 - 52,884,294 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X54,390,733 - 54,409,466 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX54,390,733 - 54,409,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X54,590,577 - 54,609,310 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X72,641,314 - 72,660,592 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX50,943,855 - 50,963,014 (+)NCBICelera
Cytogenetic MapXq21NCBI
Tasl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955531267,216 - 293,127 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955531207,614 - 293,127 (+)NCBIChiLan1.0ChiLan1.0
TASL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X32,351,736 - 32,372,522 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X32,355,112 - 32,375,901 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X23,159,321 - 23,178,192 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X30,716,157 - 30,735,059 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX30,716,617 - 30,717,522 (-)Ensemblpanpan1.1panPan2
TASL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X25,664,361 - 25,679,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX30,639,199 - 30,653,660 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X25,695,592 - 25,710,287 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X25,741,501 - 25,755,942 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X25,732,975 - 25,747,432 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X25,829,165 - 25,843,624 (-)NCBIUU_Cfam_GSD_1.0
Tasl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X18,534,520 - 18,554,443 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365536,628,131 - 6,629,027 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365536,628,131 - 6,629,027 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TASL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X28,953,805 - 28,973,055 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX28,954,266 - 28,955,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605630,933,802 - 30,953,001 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tasl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476225,430,926 - 25,448,114 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476225,427,519 - 25,448,180 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TASL
409 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000013346   ⟹   ENSSSCP00000012988
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX26,365,027 - 26,384,760 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000079996   ⟹   ENSSSCP00000069461
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX26,363,810 - 26,393,041 (-)Ensembl
RefSeq Acc Id: XM_001925715   ⟹   XP_001925750
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X26,363,808 - 26,384,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673521   ⟹   XP_005673578
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X26,363,808 - 26,384,931 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001925750   ⟸   XM_001925715
- UniProtKB: F1SPV1 (UniProtKB/TrEMBL),   A0A4X1VF04 (UniProtKB/TrEMBL),   A0A8D1B1R9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673578   ⟸   XM_005673521
- UniProtKB: F1SPV1 (UniProtKB/TrEMBL),   A0A4X1VF04 (UniProtKB/TrEMBL),   A0A8D1B1R9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000069461   ⟸   ENSSSCT00000079996
Ensembl Acc Id: ENSSSCP00000012988   ⟸   ENSSSCT00000013346


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012201 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015014830 UniProtKB/TrEMBL
  ENSSSCG00025024635 UniProtKB/TrEMBL
  ENSSSCG00030021076 UniProtKB/TrEMBL
  ENSSSCG00035067546 UniProtKB/TrEMBL
  ENSSSCG00040062045 UniProtKB/TrEMBL
  ENSSSCG00045032529 UniProtKB/TrEMBL
  ENSSSCG00060020377 UniProtKB/TrEMBL
  ENSSSCG00065020740 UniProtKB/TrEMBL
  ENSSSCG00070023958 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013346 ENTREZGENE
  ENSSSCT00000013346.6 UniProtKB/TrEMBL
  ENSSSCT00015019610.1 UniProtKB/TrEMBL
  ENSSSCT00025033276.1 UniProtKB/TrEMBL
  ENSSSCT00025033308.1 UniProtKB/TrEMBL
  ENSSSCT00030029209.1 UniProtKB/TrEMBL
  ENSSSCT00030029215.1 UniProtKB/TrEMBL
  ENSSSCT00035091099.1 UniProtKB/TrEMBL
  ENSSSCT00035091114.1 UniProtKB/TrEMBL
  ENSSSCT00040084445.1 UniProtKB/TrEMBL
  ENSSSCT00040084488.1 UniProtKB/TrEMBL
  ENSSSCT00045055515.1 UniProtKB/TrEMBL
  ENSSSCT00045055551.1 UniProtKB/TrEMBL
  ENSSSCT00060027591.1 UniProtKB/TrEMBL
  ENSSSCT00060027593.1 UniProtKB/TrEMBL
  ENSSSCT00065027611.1 UniProtKB/TrEMBL
  ENSSSCT00065027616.1 UniProtKB/TrEMBL
  ENSSSCT00070047795.1 UniProtKB/TrEMBL
InterPro DUF4569 UniProtKB/TrEMBL
KEGG Report ssc:100156110 UniProtKB/TrEMBL
NCBI Gene CXHXorf21 ENTREZGENE
PANTHER PTHR14889 UniProtKB/TrEMBL
  TLR ADAPTER INTERACTING WITH SLC15A4 ON THE LYSOSOME UniProtKB/TrEMBL
Pfam DUF4569 UniProtKB/TrEMBL
UniProt A0A4X1VF04 ENTREZGENE
  A0A8D1B1R9 ENTREZGENE, UniProtKB/TrEMBL
  F1SPV1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VF04 UniProtKB/TrEMBL
VGNC ID VGNC:87111 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-06 TASL  TLR adaptor interacting with endolysosomal SLC15A4  CXHXorf21  chromosome X CXorf21 homolog  Symbol and/or name change 19259463 PROVISIONAL