TRMT2A (tRNA methyltransferase 2 homolog A)

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Gene: TRMT2A (tRNA methyltransferase 2 homolog A) Sus scrofa

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Symbol:

TRMT2A

Name:

tRNA methyltransferase 2 homolog A

RGD ID:

14087990

Description:

ENCODES a protein that exhibits C-methyltransferase activity (inferred); methyltransferase activity (inferred); nucleic acid binding (inferred); INVOLVED IN methylation (inferred); RNA processing (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TRM2 tRNA methyltransferase 2 homolog A; tRNA (uracil-5-)-methyltransferase homolog A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	51,489,892 - 51,494,190 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	51,489,889 - 51,494,204 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	55,126,931 - 55,131,237 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

chromosome 22q11.2 deletion syndrome, distal (ISO)

chromosome 22q11.2 microduplication syndrome (ISO)

DiGeorge syndrome (ISO)

epilepsy (ISO)

hemorrhagic disease (ISO)

intellectual disability (ISO)

megacolon (ISO)

Neurodevelopmental Disorders (ISO)

primary immunodeficiency disease (ISO)

schizophrenia (ISO)

velocardiofacial syndrome (ISO)

Venous Thrombosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

methylation (IEA)

RNA processing (IEA)

Molecular Function

C-methyltransferase activity (IEA)

methyltransferase activity (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA methyltransferase activity (IEA)

tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

TRMT2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	51,489,892 - 51,494,190 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	51,489,889 - 51,494,204 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	55,126,931 - 55,131,237 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRMT2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	20,111,875 - 20,117,226 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	20,111,875 - 20,117,392 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	20,099,398 - 20,104,749 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	18,479,398 - 18,484,768 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	3,951,448 - 3,956,818 (-)	NCBI		Celera
Cytogenetic Map	22	q11.21	ENTREZGENE
HuRef	22	3,720,050 - 3,725,479 (-)	NCBI		HuRef
CHM1_1	22	20,099,073 - 20,104,502 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	20,490,925 - 20,496,276 (-)	NCBI		T2T-CHM13v2.0

Trmt2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	18,066,747 - 18,072,636 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	18,066,543 - 18,072,636 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	18,248,847 - 18,254,772 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	18,248,679 - 18,254,772 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	18,248,976 - 18,253,595 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	18,162,242 - 18,167,065 (+)	NCBI		MGSCv36	mm8
Celera	16	18,821,629 - 18,826,248 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	11.31	NCBI

Trmt2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	96,241,998 - 96,246,719 (-)	NCBI		GRCr8
mRatBN7.2	11	82,737,689 - 82,742,423 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,737,689 - 82,742,336 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	91,466,077 - 91,470,686 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	84,127,305 - 84,131,914 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	83,180,820 - 83,185,429 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,885,671 - 86,890,482 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,885,626 - 86,890,390 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	89,979,609 - 89,984,427 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	84,731,490 - 84,736,099 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	84,772,087 - 84,776,696 (-)	NCBI
Celera	11	81,514,696 - 81,519,305 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

Trmt2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	17,993,434 - 17,997,850 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	17,993,130 - 17,997,944 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRMT2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	29,738,978 - 29,744,352 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	32,285,632 - 32,291,342 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	2,872,328 - 2,877,732 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	18,544,736 - 18,550,174 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	18,544,736 - 18,550,174 (-)	Ensembl	panpan1.1		panPan2

TRMT2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	29,219,549 - 29,224,155 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	29,219,812 - 29,226,233 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	29,178,491 - 29,183,068 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	30,623,618 - 30,628,196 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	30,623,786 - 30,630,273 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	28,671,464 - 28,676,060 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	28,296,828 - 28,301,424 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	29,381,756 - 29,386,414 (+)	NCBI		UU_Cfam_GSD_1.0

Trmt2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	138,734,886 - 138,739,581 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	4,014,508 - 4,020,569 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	4,015,072 - 4,020,163 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRMT2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	5,622,542 - 5,627,923 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	5,622,630 - 5,627,257 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	1,305,872 - 1,311,254 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trmt2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	722,607 - 727,947 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	722,901 - 727,979 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TRMT2A
48 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001927785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021072787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK393553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT737345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01114741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000011097 ⟹ ENSSSCP00000010809

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	51,489,892 - 51,494,190 (-)	Ensembl

RefSeq Acc Id:

XM_001927785 ⟹ XP_001927820

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	51,489,889 - 51,494,203 (-)	NCBI

Sequence:

show sequence

GGCCCTCGCGCGCACTTCCGCCCCGCGGCCGCGCGCCCCTGGAGCTCGCAGGCGCGGCTGGGGG
TTTCAGCGGCGCGAGGCGATGATGTCGCCGGAAGCCGAGACGATTAAGACACGCTGTCTGGGAT
ACGCGCGCCGGCAGCGGACGGGAAAGTGACCGGCAAGGAGAGTGGGGGGCCCGGGCCATGCCTG
AGACCTGGACCTGAGCACCGAGGGAGTCCTGCCTCCGCCCGGGCTGGAGCGAGGCCTGCCTCTC
GGAGTCGCACCCGCTCACCGCGCGCCCCCTGTTTGCAAGGCCCTGGACGAGGCCGCGGACAGAG
TGGATGATGGGTGACGAGCCCGACAGCGAAGGTCAGGCGCGCGTGGGGGACCCCGGTCAGGACA
GCCCCAGCGCGCCGGGCAGCCCCGCGGCCCCGGGCCCCCAGCAGGAGAAGGATCTGGACGCTGG
GGCCGCGGGGCCGGACGTTCAGCCGGGGCCCTATAGCTACATCCGGGCCGGCCTGTTCACCTCG
GAGATCTTTAAGTTGGAGTTGCAGAACGTACCGCGCCATGCCAGCTTCAGCGACGTCCGGCGCT
TCCTGGGCCGCTTTGGGCTGCAACCCCACAAGACCAAACTCTTCGGGCAGCCTCCTTGCGCCTT
CGTGACATTTCGTAGCGCCGCCGAGCGCGACAAGGCCCTGTGCGTGCTGCACGGCGCCCTCTGG
AAGGGCCGCCCGCTCAGCGTGCGCCTAGCGAGGCCGAAGGCTGATCCCATGGCCAGGAAGAGGC
AGAGAGAGGACGAGGGTGAGCCGCCAGCCTCCCAGGCCACCTGTATCGCTGATGTAGTGACCCC
TCTTTGGACCGTGCCCTATGCAGAGCAGCTTGAGCGCAAGCGACTGGAATGTGAGCAGGTGCTG
CAGAAGCTAGCCAAAGAAATTGGGAACACCAACCGTGCTCTGCTGCCCTGGCTACTGTCACAGA
GGCAAAAGCATAACAAGGCTTGCTGCATGCTAGAAGGGGTCAAGCCGTCACCCCAGCAGACTGA
GTATCGTAACAAGTGTGAGTTTCTGGTCGGCGTAGGGGTCGATGGGGAAGACAACACGGTAGGC
TGCAGGCTTGGCAAGTACAAGGGCGGTACGTGTGCTGTAGCAGCCCCCTTCGACACTGTGCACA
TACCTACGGCCACCAAGCAGGTGGTGAAGGCCTTCCAGGAGTTTATCCGGTCCACTCCATACTC
TGCGTATGACCCGGAAACATACTCGGGTCATTGGAAGCAGCTGACCGTGCGTACCAGTCGCCGC
GGCCAAGCCATGGCCATTGCCTACTTCCACCCCCAGAAGCTGAGCCCTGAGGAATTAGCAGGGC
TGAAGGCCTCTCTGGCACAGCACTTCACAACGGGTCCAGGCAAGGCCAGCGGGGTGACCTGCCT
CTACTTTGTGGAAGAGGGCCAGCGAAAGACCCCCAGCCAGGAGGGCCTGCCTCTGGAACACGTG
GCTGGGGACCAGTGCATCTACGAGGACCTGCTGGGGTTGACCTTCCGGATCTCCCCTCATGCCT
TCTTCCAGGTGAACACACCTGCGGCTGAGGTGCTCTACACAGTCATCCAGGATTGGGCCCAGCT
GGACACAGGGAGCACAGTGCTGGACGTGTGCTGTGGAACTGGCACCATTGGCCTGGCCCTGGCC
CGAAAGGTGAAGAGAGTAGTGGGGGTCGAGCTGAGCCAGGAGGCTGTGGATGATGCCCGAGTGA
ACGCCCTGGACAATGAGTTGAGCAACGTGGAATTCCACTGTGGAAGAGCTGAGGACCTGGTGCC
CCCCTTGGTGAGCAGACTGGCCTCCCAGCAGCTAGTCGCCATCCTGGACCCACCACGTGCTGGC
CTGCATTCCAAGGTGATCCTGGCTGTCCGCAGAGCTGAGAACCTCAGACGGCTCCTGTACGTCT
CCTGCAGCCCCCGGGCAGCCATGGGCAATTTTGTGGACCTCTGTAGGGCCCCATCTAACCGGGT
AAAGGGCATGCCCTTCCGGCCAGTCAAGGCTGTGGCCGTGGACCTGTTCCCACAGACCCCGCAC
TGTGAGATGCTCATCCTGTTTGAGAGGGTGGAGCACATCGATGGCTCAGGGGCTGTGGAGCTCC
AGGACCCTCCATCCCCACCCCCACCAGAGCCCCTAGGTGACATCCTGCAGGAAACTGGGGCTTC
CCCACCTTCCTAGGCCCCTGGGGCAGTGGAAACCAGACCCCATCATGGGCCAAAAACAGGGCTC
TCCAGTCTTCACACTGCTCTAGGACACTCAGATAGCAGCTGCAGAGAGCATGAGACCTGTGCTC
CCCCTTCACCTGCCCCACCCCCACCCCCGCCATCTATTTTGGACTAGTTGGGCCCCAAGGGCTG
GAATAAACGTGCTGAACTACGTA

hide sequence

RefSeq Acc Id:

XM_021072787 ⟹ XP_020928446

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	51,489,889 - 51,494,204 (-)	NCBI

Sequence:

show sequence

CGGCCCTCGCGCGCACTTCCGCCCCGCGGCCGCGCGCCCCTGGAGCTCGCAGGCGCGGCTGGGG
GTTTCAGCGGCGCGAGGCGATGATGTCGCCGGAAGCCGAGACGATTAAGACACGCTGTCTGGGA
TACGCGCGCCGGCAGCGGACGGGAAAGTGACCGGCAAGGAGAGTGGGGGGCCCGGGCCATGCCT
GAGACCTGGACCTGAGCACCGAGGGAGTCCTGCCTCCGCCCGGGCTGGAGCGAGGCCTGCCTCT
CGGAGTCGCACCCGCTCACCGCGCGCCCCCTGTTTGCAAGGCCCTGGACGAGGCCGCGGACAGA
GTGGATGATGGGTGACGAGCCCGACAGCGAAGGTCAGGCGCGCGTGGGGGACCCCGGTCAGGAC
AGCCCCAGCGCGCCGGGCAGCCCCGCGGCCCCGGGCCCCCAGCAGGAGAAGGATCTGGACGCTG
GGGCCGCGGGGCCGGACGTTCAGCCGGGGCCCTATAGCTACATCCGGGCCGGCCTGTTCACCTC
GGAGATCTTTAAGTTGGAGTTGCAGAACGTACCGCGCCATGCCAGCTTCAGCGACGTCCGGCGC
TTCCTGGGCCGCTTTGGGCTGCAACCCCACAAGACCAAACTCTTCGGGCAGCCTCCTTGCGCCT
TCGTGACATTTCGTAGCGCCGCCGAGCGCGACAAGGCCCTGTGCGTGCTGCACGGCGCCCTCTG
GAAGGGCCGCCCGCTCAGCGTGCGCCTAGCGAGGCCGAAGGCTGATCCCATGGCCAGGAAGAGG
CAGAGAGAGGACGAGGGTGAGCCGCCAGCCTCCCAGGCCACCTGTATCGCTGATGTAGTGACCC
CTCTTTGGACCGTGCCCTATGCAGAGCAGCTTGAGCGCAAGCGACTGGAATGTGAGCAGGTGCT
GCAGAAGCTAGCCAAAGAAATTGGGAACACCAACCGTGCTCTGCTGCCCTGGCTACTGTCACAG
AGGCAAAAGCATAACAAGGCTTGCTGCATGCTAGAAGGGGTCAAGCCGTCACCCCAGCAGACTG
AGTATCGTAACAAGTGTGAGTTTCTGGTCGGCGTAGGGGTCGATGGGGAAGACAACACGGTAGG
CTGCAGGCTTGGCAAGTACAAGGGCGGTACGTGTGCTGTAGCAGCCCCCTTCGACACTGTGCAC
ATACCTACGGCCACCAAGCAGGTGGTGAAGGCCTTCCAGGAGTTTATCCGGTCCACTCCATACT
CTGCGTATGACCCGGAAACATACTCGGGTCATTGGAAGCAGCTGACCGTGCGTACCAGTCGCCG
CGGCCAAGCCATGGCCATTGCCTACTTCCACCCCCAGAAGCTGAGCCCTGAGGAATTAGCAGGG
CTGAAGGCCTCTCTGGCACAGCACTTCACAACGGGTCCAGGCAAGGCCAGCGGGGTGACCTGCC
TCTACTTTGTGGAAGAGGGCCAGCGAAAGACCCCCAGCCAGGAGGGCCTGCCTCTGGAACACGT
GGCTGGGGACCAGTGCATCTACGAGGACCTGCTGGGGTTGACCTTCCGGATCTCCCCTCATGCC
TTCTTCCAGGTAGCAGAGCCACTGGGGACCAGGACAGCCGTGAGGGGTTGGCCTGTGGAGGTTT
GGGAGAGGACATTCACGTTGGGGGCCACCAGAACCACGGAGAAGGAAGGAGATTTGGAAGAGGT
GAACACACCTGCGGCTGAGGTGCTCTACACAGTCATCCAGGATTGGGCCCAGCTGGACACAGGG
AGCACAGTGCTGGACGTGTGCTGTGGAACTGGCACCATTGGCCTGGCCCTGGCCCGAAAGGTGA
AGAGAGTAGTGGGGGTCGAGCTGAGCCAGGAGGCTGTGGATGATGCCCGAGTGAACGCCCTGGA
CAATGAGTTGAGCAACGTGGAATTCCACTGTGGAAGAGCTGAGGACCTGGTGCCCCCCTTGGTG
AGCAGACTGGCCTCCCAGCAGCTAGTCGCCATCCTGGACCCACCACGTGCTGGCCTGCATTCCA
AGGTGATCCTGGCTGTCCGCAGAGCTGAGAACCTCAGACGGCTCCTGTACGTCTCCTGCAGCCC
CCGGGCAGCCATGGGCAATTTTGTGGACCTCTGTAGGGCCCCATCTAACCGGGTAAAGGGCATG
CCCTTCCGGCCAGTCAAGGCTGTGGCCGTGGACCTGTTCCCACAGACCCCGCACTGTGAGATGC
TCATCCTGTTTGAGAGGGTGGAGCACATCGATGGCTCAGGGGCTGTGGAGCTCCAGGACCCTCC
ATCCCCACCCCCACCAGAGCCCCTAGGTGACATCCTGCAGGAAACTGGGGCTTCCCCACCTTCC
TAGGCCCCTGGGGCAGTGGAAACCAGACCCCATCATGGGCCAAAAACAGGGCTCTCCAGTCTTC
ACACTGCTCTAGGACACTCAGATAGCAGCTGCAGAGAGCATGAGACCTGTGCTCCCCCTTCACC
TGCCCCACCCCCACCCCCGCCATCTATTTTGGACTAGTTGGGCCCCAAGGGCTGGAATAAACGT
GCTGAACTACGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_001927820	(Get FASTA)	NCBI Sequence Viewer
	XP_020928446	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000010809
	ENSSSCP00000010809.3
	ENSSSCP00015030142.1
	ENSSSCP00025037095.1
	ENSSSCP00030040755.1
	ENSSSCP00035024548.1
	ENSSSCP00040043067.1
	ENSSSCP00045039360.1
	ENSSSCP00050025047.1
	ENSSSCP00055009622.1
	ENSSSCP00065046953.1
	ENSSSCP00070030895.1

RefSeq Acc Id:	XP_020928446 ⟸ XM_021072787
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1ULF3 (UniProtKB/TrEMBL), A0A8D2A912 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGDEPDSEGQARVGDPGQDSPSAPGSPAAPGPQQEKDLDAGAAGPDVQPGPYSYIRAGLFTSE IFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALCVLHGALWK GRPLSVRLARPKADPMARKRQREDEGEPPASQATCIADVVTPLWTVPYAEQLERKRLECEQVLQ KLAKEIGNTNRALLPWLLSQRQKHNKACCMLEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGC RLGKYKGGTCAVAAPFDTVHIPTATKQVVKAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRRG QAMAIAYFHPQKLSPEELAGLKASLAQHFTTGPGKASGVTCLYFVEEGQRKTPSQEGLPLEHVA GDQCIYEDLLGLTFRISPHAFFQVAEPLGTRTAVRGWPVEVWERTFTLGATRTTEKEGDLEEVN TPAAEVLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVDDARVNALDN ELSNVEFHCGRAEDLVPPLVSRLASQQLVAILDPPRAGLHSKVILAVRRAENLRRLLYVSCSPR AAMGNFVDLCRAPSNRVKGMPFRPVKAVAVDLFPQTPHCEMLILFERVEHIDGSGAVELQDPPS PPPPEPLGDILQETGASPPS hide sequence

RefSeq Acc Id:	XP_001927820 ⟸ XM_001927785
- Peptide Label:	isoform X2
- UniProtKB:	F1RHM9 (UniProtKB/TrEMBL), A0A4X1ULF3 (UniProtKB/TrEMBL), A0A8D2A912 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGDEPDSEGQARVGDPGQDSPSAPGSPAAPGPQQEKDLDAGAAGPDVQPGPYSYIRAGLFTSE IFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALCVLHGALWK GRPLSVRLARPKADPMARKRQREDEGEPPASQATCIADVVTPLWTVPYAEQLERKRLECEQVLQ KLAKEIGNTNRALLPWLLSQRQKHNKACCMLEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGC RLGKYKGGTCAVAAPFDTVHIPTATKQVVKAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRRG QAMAIAYFHPQKLSPEELAGLKASLAQHFTTGPGKASGVTCLYFVEEGQRKTPSQEGLPLEHVA GDQCIYEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALAR KVKRVVGVELSQEAVDDARVNALDNELSNVEFHCGRAEDLVPPLVSRLASQQLVAILDPPRAGL HSKVILAVRRAENLRRLLYVSCSPRAAMGNFVDLCRAPSNRVKGMPFRPVKAVAVDLFPQTPHC EMLILFERVEHIDGSGAVELQDPPSPPPPEPLGDILQETGASPPS hide sequence

Ensembl Acc Id:

ENSSSCP00000010809 ⟸ ENSSSCT00000011097

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000010136	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015056325	UniProtKB/TrEMBL
	ENSSSCG00025062334	UniProtKB/TrEMBL
	ENSSSCG00030063053	UniProtKB/TrEMBL
	ENSSSCG00035045870	UniProtKB/TrEMBL
	ENSSSCG00040070540	UniProtKB/TrEMBL
	ENSSSCG00045033013	UniProtKB/TrEMBL
	ENSSSCG00050043001	UniProtKB/TrEMBL
	ENSSSCG00055006282	UniProtKB/TrEMBL
	ENSSSCG00065076558	UniProtKB/TrEMBL
	ENSSSCG00070018735	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000011097	ENTREZGENE
	ENSSSCT00000011097.5	UniProtKB/TrEMBL
	ENSSSCT00015075153.1	UniProtKB/TrEMBL
	ENSSSCT00025085358.1	UniProtKB/TrEMBL
	ENSSSCT00030088220.1	UniProtKB/TrEMBL
	ENSSSCT00035060982.1	UniProtKB/TrEMBL
	ENSSSCT00040096814.1	UniProtKB/TrEMBL
	ENSSSCT00045056404.1	UniProtKB/TrEMBL
	ENSSSCT00050058465.1	UniProtKB/TrEMBL
	ENSSSCT00055012190.1	UniProtKB/TrEMBL
	ENSSSCT00065105751.1	UniProtKB/TrEMBL
	ENSSSCT00070036944.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.1070	UniProtKB/TrEMBL
	3.30.70.330	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	SAM-dependent_MTases	UniProtKB/TrEMBL
	TRM2_euk	UniProtKB/TrEMBL
	TRMT2A_RRM	UniProtKB/TrEMBL
	U5_MeTrfase_fam	UniProtKB/TrEMBL
KEGG Report	ssc:100154701	UniProtKB/TrEMBL
NCBI Gene	TRMT2A	ENTREZGENE
PANTHER	PTHR45904	UniProtKB/TrEMBL
	TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A	UniProtKB/TrEMBL
Pfam	tRNA_U5-meth_tr	UniProtKB/TrEMBL
PROSITE	SAM_MT_RNA_M5U	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A4X1ULF3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0XPJ9_PIG	UniProtKB/TrEMBL
	A0A8D1KKW5_PIG	UniProtKB/TrEMBL
	A0A8D1TWL9_PIG	UniProtKB/TrEMBL
	A0A8D2A912	ENTREZGENE, UniProtKB/TrEMBL
	F1RHM9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:94448	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar