CCDC168 (coiled-coil domain containing 168) - Rat Genome Database

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Gene: CCDC168 (coiled-coil domain containing 168) Sus scrofa
Analyze
Symbol: CCDC168
Name: coiled-coil domain containing 168
RGD ID: 14076038
Description: ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); holoprosencephaly 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 168
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11171,047,611 - 71,069,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,361,285 - 78,368,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CCDC168PigAnal Atresia, Hypospadias, and Penoscrotal Inversion  ISOCCDC168 (Homo sapiens)8554872ClinVar Annotator: match by term: Anal atresia more ...ClinVarPMID:31690835
CCDC168PigEvans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency  ISOCCDC168 (Homo sapiens)8554872ClinVar Annotator: match by term: Evans syndrome more ...ClinVarPMID:25414442 and PMID:28492532
CCDC168Pigholoprosencephaly 5  ISOCCDC168 (Homo sapiens)8554872ClinVar Annotator: match by term: Holoprosencephaly 5ClinVarPMID:28492532
CCDC168Pigpropionic acidemia  ISOCCDC168 (Homo sapiens)8554872ClinVar Annotator: match by term: Propionic acidemiaClinVarPMID:28492532



CCDC168
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11171,047,611 - 71,069,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,361,285 - 78,368,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC168
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813102,729,367 - 102,759,072 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13102,729,367 - 102,759,072 (-)EnsemblGRCh38hg38GRCh38
GRCh3713103,381,717 - 103,411,422 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1384,226,147 - 84,255,852 (-)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1383,974,010 - 84,003,709 (-)NCBIHuRef
CHM1_113103,351,137 - 103,380,855 (-)NCBICHM1_1
T2T-CHM13v2.013101,947,434 - 101,977,110 (-)NCBIT2T-CHM13v2.0
Ccdc168
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,095,031 - 44,118,906 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl144,095,032 - 44,118,906 (-)EnsemblGRCm39 Ensembl
GRCm38144,055,869 - 44,082,447 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,055,872 - 44,079,746 (-)EnsemblGRCm38mm10GRCm38
MGSCv37144,113,655 - 44,136,065 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36144,001,356 - 44,023,766 (-)NCBIMGSCv36mm8
Celera144,406,678 - 44,423,218 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.54NCBI
Ccdc168
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8953,690,704 - 53,728,801 (-)NCBIGRCr8
mRatBN7.2946,198,234 - 46,236,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl946,198,635 - 46,235,936 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0950,814,067 - 50,851,997 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0950,481,044 - 50,518,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4943,137,470 - 43,174,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera943,902,861 - 43,940,217 (-)NCBICelera
Cytogenetic Map9q22NCBI
Ccdc168
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554048,401,713 - 8,425,519 (+)NCBIChiLan1.0ChiLan1.0
CCDC168
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214104,248,302 - 104,280,140 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113102,916,255 - 102,948,102 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01383,891,331 - 83,921,047 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113103,027,195 - 103,056,282 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13103,027,230 - 103,056,282 (-)Ensemblpanpan1.1panPan2
CCDC168
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12252,228,429 - 52,257,920 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2252,008,103 - 52,035,693 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02252,676,100 - 52,703,684 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12252,328,682 - 52,356,274 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02252,344,737 - 52,372,325 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02252,385,952 - 52,413,524 (-)NCBIUU_Cfam_GSD_1.0
Ccdc168
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,609,247 - 187,648,049 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364728,305,760 - 8,337,456 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC168
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1381,291,027 - 81,321,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604637,828,041 - 37,859,028 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in CCDC168
912 total Variants





RefSeq Transcripts XM_021065892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021065892   ⟹   XP_020921551
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11171,047,611 - 71,069,998 (-)NCBI
Sequence:
Protein RefSeqs XP_020921551 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00035002070.1
  ENSSSCP00035002072.1
  ENSSSCP00045019192.1
RefSeq Acc Id: XP_020921551   ⟸   XM_021065892
- UniProtKB: A0A8D1HIM2 (UniProtKB/TrEMBL)
- Sequence:
Coiled-coil



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00035004654 UniProtKB/TrEMBL
  ENSSSCG00045016304 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00035005845.1 UniProtKB/TrEMBL
  ENSSSCT00035005850.1 UniProtKB/TrEMBL
  ENSSSCT00045027742.1 UniProtKB/TrEMBL
InterPro CCDC168_N UniProtKB/TrEMBL
  LRR_transmembrane UniProtKB/TrEMBL
NCBI Gene CCDC168 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 168 UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN CCDC168 UniProtKB/TrEMBL
Pfam CCDC168_N UniProtKB/TrEMBL
UniProt A0A8D0YEE3_PIG UniProtKB/TrEMBL
  A0A8D0YG35_PIG UniProtKB/TrEMBL
  A0A8D1HIM2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:109182 ENTREZGENE
1 to 15 of 15 rows