Ccdc168 (coiled-coil domain containing 168) - Rat Genome Database

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Gene: Ccdc168 (coiled-coil domain containing 168) Mus musculus
Analyze
Symbol: Ccdc168
Name: coiled-coil domain containing 168
RGD ID: 1614550
MGI Page MGI
Description: Orthologous to human CCDC168 (coiled-coil domain containing 168).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 168; EG666713; Gm8251; leucine-rich repeat transmembrane protein CCDC168; predicted gene, EG666713
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,095,031 - 44,118,906 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl144,095,032 - 44,118,906 (-)EnsemblGRCm39 Ensembl
GRCm38144,055,869 - 44,082,447 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,055,872 - 44,079,746 (-)EnsemblGRCm38mm10GRCm38
MGSCv37144,113,655 - 44,136,065 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37144,113,655 - 44,136,065 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36144,001,356 - 44,023,766 (-)NCBIMGSCv36mm8
Celera144,406,678 - 44,423,218 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ccdc168
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,095,031 - 44,118,906 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl144,095,032 - 44,118,906 (-)EnsemblGRCm39 Ensembl
GRCm38144,055,869 - 44,082,447 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,055,872 - 44,079,746 (-)EnsemblGRCm38mm10GRCm38
MGSCv37144,113,655 - 44,136,065 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37144,113,655 - 44,136,065 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36144,001,356 - 44,023,766 (-)NCBIMGSCv36mm8
Celera144,406,678 - 44,423,218 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.54NCBI
CCDC168
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813102,729,367 - 102,759,072 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13102,729,367 - 102,759,072 (-)EnsemblGRCh38hg38GRCh38
GRCh3713103,381,717 - 103,411,422 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1384,226,147 - 84,255,852 (-)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1383,974,010 - 84,003,709 (-)NCBIHuRef
CHM1_113103,351,137 - 103,380,855 (-)NCBICHM1_1
T2T-CHM13v2.013101,947,434 - 101,977,110 (-)NCBIT2T-CHM13v2.0
Ccdc168
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8953,690,704 - 53,728,801 (-)NCBIGRCr8
mRatBN7.2946,198,234 - 46,236,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl946,198,635 - 46,235,936 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0950,814,067 - 50,851,997 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0950,481,044 - 50,518,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4943,137,470 - 43,174,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera943,902,861 - 43,940,217 (-)NCBICelera
Cytogenetic Map9q22NCBI
Ccdc168
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554048,401,713 - 8,425,519 (+)NCBIChiLan1.0ChiLan1.0
CCDC168
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214104,248,302 - 104,280,140 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113102,916,255 - 102,948,102 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01383,891,331 - 83,921,047 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113103,027,195 - 103,056,282 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13103,027,230 - 103,056,282 (-)Ensemblpanpan1.1panPan2
CCDC168
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12252,228,429 - 52,257,920 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2252,008,103 - 52,035,693 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02252,676,100 - 52,703,684 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12252,328,682 - 52,356,274 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02252,344,737 - 52,372,325 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02252,385,952 - 52,413,524 (-)NCBIUU_Cfam_GSD_1.0
Ccdc168
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,609,247 - 187,648,049 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364728,305,760 - 8,337,456 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC168
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11171,047,611 - 71,069,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,361,285 - 78,368,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC168
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1381,291,027 - 81,321,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604637,828,041 - 37,859,028 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Ccdc168
829 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:54
Interacting mature miRNAs:56
Transcripts:ENSMUST00000168641
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000168641   ⟹   ENSMUSP00000127017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl144,095,112 - 44,101,096 (-)Ensembl
GRCm38.p6 Ensembl144,055,952 - 44,061,936 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238662   ⟹   ENSMUSP00000158837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl144,095,032 - 44,118,906 (-)Ensembl
GRCm38.p6 Ensembl144,055,872 - 44,079,746 (-)Ensembl
RefSeq Acc Id: NM_001376984   ⟹   NP_001363913
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39144,095,031 - 44,118,906 (-)NCBI
GRCm38144,055,871 - 44,079,746 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001363913 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000127017.2
  ENSMUSP00000158837
  ENSMUSP00000158837.2
Reference Protein Sequences
RefSeq Acc Id: NP_001363913   ⟸   NM_001376984
- UniProtKB: A0A571BEV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000158837   ⟸   ENSMUST00000238662
RefSeq Acc Id: ENSMUSP00000127017   ⟸   ENSMUST00000168641
Protein Domains
Coiled-coil


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3647616 AgrOrtholog
Ensembl Genes ENSMUSG00000091844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000168641.2 UniProtKB/TrEMBL
  ENSMUST00000238662 ENTREZGENE
  ENSMUST00000238662.2 UniProtKB/TrEMBL
InterPro CCDC168_N UniProtKB/TrEMBL
MGD MGI:3647616 ENTREZGENE
NCBI Gene Gm8251 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 168 UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 168 UniProtKB/TrEMBL
Pfam CCDC168_N UniProtKB/TrEMBL
PhenoGen Ccdc168 PhenoGen
UniProt A0A571BEV2 ENTREZGENE, UniProtKB/TrEMBL
  F6VUT6_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-03 Ccdc168  coiled-coil domain containing 168  Gm8251  predicted gene 8251  Symbol and/or name updated 27372883 PROVISIONAL