TEX29 (testis expressed 29) - Rat Genome Database

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Gene: TEX29 (testis expressed 29) Sus scrofa
Analyze
Symbol: TEX29
Name: testis expressed 29
RGD ID: 14065903
Description: ASSOCIATED WITH factor X deficiency (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis-expressed protein 29; testis-expressed sequence 29 protein; uncharacterized protein C13orf16 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,532,266 - 77,545,913 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,531,858 - 77,555,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,007,696 - 85,021,731 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
TEX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,532,266 - 77,545,913 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,531,858 - 77,555,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,007,696 - 85,021,731 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813111,316,185 - 111,344,248 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13111,316,184 - 111,344,249 (+)EnsemblGRCh38hg38GRCh38
GRCh3713111,968,532 - 111,996,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613110,771,016 - 110,794,595 (+)NCBINCBI36Build 36hg18NCBI36
Celera1392,819,927 - 92,845,111 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1392,571,894 - 92,597,159 (+)NCBIHuRef
CHM1_113111,940,504 - 111,963,906 (+)NCBICHM1_1
T2T-CHM13v2.013110,545,648 - 110,575,278 (+)NCBIT2T-CHM13v2.0
Tex29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,890,488 - 11,905,761 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl811,890,474 - 11,905,761 (+)EnsemblGRCm39 Ensembl
GRCm38811,840,487 - 11,855,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,840,474 - 11,855,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv37811,840,521 - 11,855,761 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36811,840,493 - 11,855,733 (+)NCBIMGSCv36mm8
Celera812,015,588 - 12,030,534 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Tex29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81684,352,574 - 84,366,273 (-)NCBIGRCr8
mRatBN7.21677,650,471 - 77,664,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1677,650,473 - 77,664,116 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1682,930,937 - 82,944,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01686,383,582 - 86,397,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01681,626,290 - 81,639,932 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01682,985,834 - 83,000,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1682,985,835 - 82,999,827 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,458,364 - 82,472,373 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,500,674 - 82,514,319 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1675,452,334 - 75,465,960 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Tex29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554041,405,904 - 1,745,715 (-)NCBIChiLan1.0ChiLan1.0
TEX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214112,811,095 - 112,833,317 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113111,490,727 - 111,512,810 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01392,446,990 - 92,473,521 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113111,558,979 - 111,580,699 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13111,559,001 - 111,580,699 (+)Ensemblpanpan1.1panPan2
TEX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12259,309,452 - 59,326,308 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2259,313,874 - 59,325,494 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2259,019,207 - 59,036,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02259,932,372 - 59,949,211 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2259,932,559 - 59,949,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12259,433,925 - 59,450,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02259,426,878 - 59,443,709 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02259,461,621 - 59,478,482 (+)NCBIUU_Cfam_GSD_1.0
Tex29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945194,174,391 - 194,192,183 (+)NCBIHiC_Itri_2
TEX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1389,479,853 - 89,502,535 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl389,480,641 - 89,502,410 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604646,250,751 - 46,273,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TEX29
877 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 4 1 3 1 1 16 2
Below cutoff 2 1 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000096926   ⟹   ENSSSCP00000080546
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1177,532,266 - 77,545,913 (+)Ensembl
RefSeq Acc Id: XM_003131097   ⟹   XP_003131145
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11177,531,858 - 77,545,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005653830   ⟹   XP_005653887
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11177,531,858 - 77,545,928 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336779
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11177,531,858 - 77,555,300 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005653887   ⟸   XM_005653830
- Peptide Label: isoform X1
- UniProtKB: A0A8D1IQ18 (UniProtKB/TrEMBL),   A0A8W4FMH0 (UniProtKB/TrEMBL),   A0A8D0RE96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003131145   ⟸   XM_003131097
- Peptide Label: isoform X2
- UniProtKB: A0A8D0RE96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000080546   ⟸   ENSSSCT00000096926


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000061055 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025020343 UniProtKB/TrEMBL
  ENSSSCG00035024396 UniProtKB/TrEMBL
  ENSSSCG00045030147 UniProtKB/TrEMBL
  ENSSSCG00055029213 UniProtKB/TrEMBL
  ENSSSCG00065056705 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000096926 ENTREZGENE
  ENSSSCT00000096926.1 UniProtKB/TrEMBL
  ENSSSCT00025027748.1 UniProtKB/TrEMBL
  ENSSSCT00035032091.1 UniProtKB/TrEMBL
  ENSSSCT00045051509.1 UniProtKB/TrEMBL
  ENSSSCT00055058102.1 UniProtKB/TrEMBL
  ENSSSCT00065077659.1 UniProtKB/TrEMBL
InterPro TEX29 UniProtKB/TrEMBL
NCBI Gene TEX29 ENTREZGENE
PANTHER TESTIS-EXPRESSED PROTEIN 29 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 29 UniProtKB/TrEMBL
Pfam TEX29 UniProtKB/TrEMBL
UniProt A0A8D0RE96 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IQ18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FMH0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93897 ENTREZGENE