Tex29 (testis expressed 29) - Rat Genome Database

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Gene: Tex29 (testis expressed 29) Mus musculus
Analyze
Symbol: Tex29
Name: testis expressed 29
RGD ID: 1623135
MGI Page MGI
Description: Predicted to be located in membrane. Is expressed in testis. Orthologous to human TEX29 (testis expressed 29).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1700018L24Rik; hypothetical protein LOC75528; testis-expressed protein 29; testis-expressed sequence 29 protein; uncharacterized protein C13orf16 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,890,488 - 11,905,761 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl811,890,474 - 11,905,761 (+)EnsemblGRCm39 Ensembl
GRCm38811,840,487 - 11,855,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,840,474 - 11,855,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv37811,840,521 - 11,855,761 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36811,840,493 - 11,855,733 (+)NCBIMGSCv36mm8
Celera812,015,588 - 12,030,534 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24194600  


Genomics

Comparative Map Data
Tex29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,890,488 - 11,905,761 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl811,890,474 - 11,905,761 (+)EnsemblGRCm39 Ensembl
GRCm38811,840,487 - 11,855,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,840,474 - 11,855,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv37811,840,521 - 11,855,761 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36811,840,493 - 11,855,733 (+)NCBIMGSCv36mm8
Celera812,015,588 - 12,030,534 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
TEX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813111,316,185 - 111,344,248 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13111,316,184 - 111,344,249 (+)EnsemblGRCh38hg38GRCh38
GRCh3713111,968,532 - 111,996,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613110,771,016 - 110,794,595 (+)NCBINCBI36Build 36hg18NCBI36
Celera1392,819,927 - 92,845,111 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1392,571,894 - 92,597,159 (+)NCBIHuRef
CHM1_113111,940,504 - 111,963,906 (+)NCBICHM1_1
T2T-CHM13v2.013110,545,648 - 110,575,278 (+)NCBIT2T-CHM13v2.0
Tex29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81684,352,574 - 84,366,273 (-)NCBIGRCr8
mRatBN7.21677,650,471 - 77,664,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1677,650,473 - 77,664,116 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1682,930,937 - 82,944,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01686,383,582 - 86,397,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01681,626,290 - 81,639,932 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01682,985,834 - 83,000,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1682,985,835 - 82,999,827 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,458,364 - 82,472,373 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,500,674 - 82,514,319 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1675,452,334 - 75,465,960 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Tex29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554041,405,904 - 1,745,715 (-)NCBIChiLan1.0ChiLan1.0
TEX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214112,811,095 - 112,833,317 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113111,490,727 - 111,512,810 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01392,446,990 - 92,473,521 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113111,558,979 - 111,580,699 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13111,559,001 - 111,580,699 (+)Ensemblpanpan1.1panPan2
TEX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12259,309,452 - 59,326,308 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2259,313,874 - 59,325,494 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2259,019,207 - 59,036,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02259,932,372 - 59,949,211 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2259,932,559 - 59,949,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12259,433,925 - 59,450,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02259,426,878 - 59,443,709 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02259,461,621 - 59,478,482 (+)NCBIUU_Cfam_GSD_1.0
Tex29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945194,174,391 - 194,192,183 (+)NCBIHiC_Itri_2
TEX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,532,266 - 77,545,913 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,531,858 - 77,555,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,007,696 - 85,021,731 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1389,479,853 - 89,502,535 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl389,480,641 - 89,502,410 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604646,250,751 - 46,273,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Tex29
486 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:431
Count of miRNA genes:276
Interacting mature miRNAs:298
Transcripts:ENSMUST00000033909, ENSMUST00000132536, ENSMUST00000144007, ENSMUST00000166638
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1357525Pnhdlc3_mplasma non-HDL cholesterol 3 (mouse)Not determined8721249923753815Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
14700791Mencq6_mmeniscus calcification QTL 6 (mouse)81102200012200000Mouse
14697703Stsl1_mSalmonella typhimurium susceptibility locus 1 (mouse)81135000017050016Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000033909   ⟹   ENSMUSP00000033909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,890,474 - 11,905,761 (+)Ensembl
GRCm38.p6 Ensembl811,840,474 - 11,855,761 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,892,061 - 11,905,757 (+)Ensembl
GRCm38.p6 Ensembl811,842,061 - 11,855,757 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144007   ⟹   ENSMUSP00000148095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,890,611 - 11,894,158 (+)Ensembl
GRCm38.p6 Ensembl811,840,611 - 11,844,158 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166638   ⟹   ENSMUSP00000132090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,890,919 - 11,905,705 (+)Ensembl
GRCm38.p6 Ensembl811,840,919 - 11,855,705 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209692   ⟹   ENSMUSP00000148049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,890,532 - 11,905,756 (+)Ensembl
GRCm38.p6 Ensembl811,840,532 - 11,855,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209704   ⟹   ENSMUSP00000147894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,890,522 - 11,905,761 (+)Ensembl
GRCm38.p6 Ensembl811,840,522 - 11,855,761 (+)Ensembl
RefSeq Acc Id: NM_029326   ⟹   NP_083602
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39811,890,521 - 11,905,761 (+)NCBI
GRCm38811,840,521 - 11,855,761 (+)NCBI
MGSCv37811,840,521 - 11,855,761 (+)RGD
Celera812,015,588 - 12,030,534 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508918   ⟹   XP_006508981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39811,890,912 - 11,905,761 (+)NCBI
GRCm38811,840,912 - 11,855,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508919   ⟹   XP_006508982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39811,890,983 - 11,905,761 (+)NCBI
GRCm38811,840,983 - 11,855,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508920   ⟹   XP_006508983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39811,890,488 - 11,905,761 (+)NCBI
GRCm38811,840,488 - 11,855,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243828   ⟹   XP_030099688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39811,892,704 - 11,905,761 (+)NCBI
GRCm38811,842,705 - 11,855,761 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083602   ⟸   NM_029326
- UniProtKB: Q9DA77 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508983   ⟸   XM_006508920
- Peptide Label: isoform X2
- UniProtKB: Q9DA77 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508981   ⟸   XM_006508918
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GSS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508982   ⟸   XM_006508919
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GSS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099688   ⟸   XM_030243828
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GSS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000148095   ⟸   ENSMUST00000144007
RefSeq Acc Id: ENSMUSP00000132090   ⟸   ENSMUST00000166638
RefSeq Acc Id: ENSMUSP00000033909   ⟸   ENSMUST00000033909
RefSeq Acc Id: ENSMUSP00000147894   ⟸   ENSMUST00000209704
RefSeq Acc Id: ENSMUSP00000148049   ⟸   ENSMUST00000209692

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DA77-F1-model_v2 AlphaFold Q9DA77 1-186 view protein structure

Promoters
RGD ID:8666445
Promoter ID:EPDNEW_M11254
Type:initiation region
Name:Tex29_1
Description:Mus musculus testis expressed 29 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38811,840,521 - 11,840,581EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922778 AgrOrtholog
Ensembl Genes ENSMUSG00000031512 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033909 ENTREZGENE
  ENSMUST00000033909.14 UniProtKB/Swiss-Prot
  ENSMUST00000144007.2 UniProtKB/TrEMBL
  ENSMUST00000166638.2 UniProtKB/Swiss-Prot
  ENSMUST00000209692 ENTREZGENE
  ENSMUST00000209692.2 UniProtKB/TrEMBL
  ENSMUST00000209704.2 UniProtKB/TrEMBL
InterPro TEX29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75528 UniProtKB/Swiss-Prot
MGD MGI:1922778 ENTREZGENE
NCBI Gene 75528 ENTREZGENE
PANTHER TESTIS-EXPRESSED PROTEIN 29 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 29 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 29 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 29 UniProtKB/TrEMBL
Pfam TEX29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tex29 PhenoGen
UniProt A0A1B0GSD5_MOUSE UniProtKB/TrEMBL
  A0A1B0GSS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GSW0_MOUSE UniProtKB/TrEMBL
  Q9DA77 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-20 Tex29  testis expressed 29  1700018L24Rik  RIKEN cDNA 1700018L24 gene  Symbol and/or name change 5135510 APPROVED