RP1 (RP1 axonemal microtubule associated) - Rat Genome Database

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Gene: RP1 (RP1 axonemal microtubule associated) Sus scrofa
Analyze
Symbol: RP1
Name: RP1 axonemal microtubule associated
RGD ID: 14062148
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN cellular response to light stimulus (ortholog); positive regulation of non-motile cilium assembly (ortholog); retina development in camera-type eye (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (inferred); ciliary tip (inferred); cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: oxygen-regulated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl476,724,604 - 76,734,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1476,724,604 - 76,730,264 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl476,724,604 - 76,734,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1476,724,604 - 76,730,264 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38854,559,185 - 54,871,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl854,509,422 - 54,871,720 (+)EnsemblGRCh38hg38GRCh38
GRCh37855,471,745 - 55,783,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36855,691,180 - 55,705,947 (+)NCBINCBI36Build 36hg18NCBI36
Build 34855,691,179 - 55,705,947NCBI
Celera851,519,220 - 51,533,987 (+)NCBICelera
Cytogenetic Map8q11.23-q12.1NCBI
HuRef850,996,864 - 51,011,630 (+)NCBIHuRef
CHM1_1855,580,233 - 55,594,998 (+)NCBICHM1_1
T2T-CHM13v2.0854,886,748 - 55,248,781 (+)NCBIT2T-CHM13v2.0
Rp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914,185,896 - 4,479,508 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14,069,780 - 4,479,464 (-)EnsemblGRCm39 Ensembl
GRCm3814,115,673 - 4,409,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13,999,557 - 4,409,241 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714,334,224 - 4,350,473 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614,334,224 - 4,350,473 (-)NCBIMGSCv36mm8
Celera14,363,200 - 4,379,450 (-)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.65NCBI
Rp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,918,728 - 20,380,811 (+)NCBIGRCr8
mRatBN7.2515,121,104 - 15,582,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl515,121,133 - 15,579,363 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx517,359,324 - 17,375,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,956,553 - 18,972,879 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,693,943 - 18,710,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0515,005,028 - 15,060,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl515,043,955 - 15,060,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0519,789,094 - 19,844,587 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4515,393,101 - 15,401,890 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera514,541,674 - 14,558,002 (+)NCBICelera
Cytogenetic Map5q12NCBI
Rp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545413,781,556 - 14,082,310 (+)NCBIChiLan1.0ChiLan1.0
RP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2770,191,285 - 70,524,500 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1845,916,098 - 46,248,935 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0850,979,412 - 51,311,431 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1848,454,096 - 48,617,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl848,419,033 - 48,583,879 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl848,419,033 - 48,583,879 (+)NCBIpanpan1.1panPan2
RP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1296,079,519 - 6,136,009 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl296,079,377 - 6,136,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha296,435,871 - 6,446,199 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0296,193,857 - 6,204,194 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl296,147,680 - 6,204,194 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1296,139,004 - 6,149,329 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0296,345,098 - 6,355,440 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0296,523,726 - 6,534,052 (+)NCBIUU_Cfam_GSD_1.0
Rp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530373,123,919 - 73,388,680 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364961,524,123 - 1,583,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1850,743,699 - 50,837,089 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl850,627,957 - 50,685,911 (+)NCBIChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl850,627,957 - 50,685,911 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603990,878,192 - 91,240,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247351,093,929 - 1,179,265 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247351,129,333 - 1,179,387 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RP1
164 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021090355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000079533   ⟹   ENSSSCP00000070531
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl476,724,604 - 76,734,610 (-)Ensembl
RefSeq Acc Id: XM_021090355   ⟹   XP_020946014
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1476,724,604 - 76,730,264 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020946014 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000070531.1
Reference Protein Sequences
RefSeq Acc Id: XP_020946014   ⟸   XM_021090355
- UniProtKB: A0A5G2R2G0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000070531   ⟸   ENSSSCT00000079533
Protein Domains
Doublecortin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000042752 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000079533.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.230 UniProtKB/TrEMBL
InterPro Doublecortin_dom UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/TrEMBL
  RP1/RP1L1/DCX UniProtKB/TrEMBL
NCBI Gene RP1 ENTREZGENE
PANTHER OXYGEN-REGULATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR23005 UniProtKB/TrEMBL
Pfam DCX UniProtKB/TrEMBL
PROSITE PS50309 UniProtKB/TrEMBL
SMART DCX UniProtKB/TrEMBL
Superfamily-SCOP SSF89837 UniProtKB/TrEMBL
UniProt A0A5G2R2G0 ENTREZGENE, UniProtKB/TrEMBL