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Gene: Rp1 (retinitis pigmentosa 1 (human)) Mus musculus

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Symbol:

Rp1

Name:

retinitis pigmentosa 1 (human)

RGD ID:

1318062

MGI Page

MGI

Description:

Enables microtubule binding activity. Involved in axoneme assembly; photoreceptor cell development; and photoreceptor cell maintenance. Acts upstream of or within cellular response to light stimulus; positive regulation of non-motile cilium assembly; and retina morphogenesis in camera-type eye. Located in several cellular components, including ciliary tip; photoreceptor cell cilium; and photoreceptor inner segment. Part of microtubule associated complex. Is expressed in eye; photoreceptor layer outer segment; and retina. Used to study retinitis pigmentosa 1. Human ortholog(s) of this gene implicated in retinitis pigmentosa 1. Orthologous to human RP1 (RP1 axonemal microtubule associated).

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

Dcdc3; Gm38717; lipoxygenase homology domain-containing protein 1; mG145; O; Orp1; oxygen-regulated protein 1; predicted gene, 38717; retinitis pigmentosa 1 homolog; retinitis pigmentosa RP1 protein homolog; Rp; Rp1h; uncharacterized protein Gm38717

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	4,185,896 - 4,479,508 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	4,069,780 - 4,479,464 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	4,115,673 - 4,409,266 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	3,999,557 - 4,409,241 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	4,334,224 - 4,350,473 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	4,334,224 - 4,350,473 (-)	NCBI		MGSCv36	mm8
Celera	1	4,363,200 - 4,379,450 (-)	NCBI		Celera
Cytogenetic Map	1	A1	NCBI
cM Map	1	1.65	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast ductal carcinoma (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

HYPERTRIGLYCERIDEMIA 1 (ISO)

invasive ductal carcinoma (ISO)

Leber hereditary optic neuropathy (ISO)

optic atrophy (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (IAGP,ISO)

Vision Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloroethane (EXP)

1,2-dichloroethane (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (ISO)

diiodine (EXP)

endosulfan (ISO)

fulvestrant (ISO)

paracetamol (ISO)

phenformin (ISO)

sodium arsenite (ISO)

titanium dioxide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axoneme assembly (IBA,IDA)

cellular response to light stimulus (IMP)

intracellular signal transduction (IEA)

microtubule polymerization (TAS)

negative regulation of microtubule depolymerization (TAS)

photoreceptor cell development (IBA,IMP)

photoreceptor cell maintenance (IMP)

photoreceptor cell outer segment organization (IDA)

positive regulation of non-motile cilium assembly (IDA,IGI)

retina development in camera-type eye (IBA,IMP)

retina morphogenesis in camera-type eye (IMP)

retinal cone cell development (IDA)

retinal rod cell development (IDA)

visual perception (IEA)

Cellular Component

axoneme (IBA,IDA)

ciliary tip (IDA)

cilium (IDA)

microtubule associated complex (IDA)

photoreceptor cell cilium (IDA)

photoreceptor connecting cilium (IDA,ISO)

photoreceptor inner segment (IDA,ISO)

photoreceptor outer segment (IDA)

Molecular Function

microtubule binding (IDA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

retinitis pigmentosa pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal cone electrophysiology (IAGP)

abnormal eye electrophysiology (IAGP)

abnormal eye physiology (IAGP)

abnormal ocular fundus morphology (IAGP)

abnormal photoreceptor outer segment morphology (IAGP)

abnormal retina neuronal layer morphology (IAGP)

abnormal retina photoreceptor morphology (IAGP)

abnormal retina vasculature morphology (IAGP)

abnormal rod electrophysiology (IAGP)

decreased a-wave amplitude (IAGP)

decreased b-wave amplitude (IAGP)

decreased retina photoreceptor cell number (IAGP)

disorganized photoreceptor inner segment (IAGP)

disorganized photoreceptor outer segment (IAGP)

increased susceptibility to age-related retinal degeneration (IAGP)

retina cone cell degeneration (IAGP)

retina degeneration (IAGP)

retina photoreceptor degeneration (IAGP)

retina rod cell degeneration (IAGP)

short photoreceptor inner segment (IAGP)

short photoreceptor outer segment (IAGP)

thin retina outer nuclear layer (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Genes and mutations causing retinitis pigmentosa.	Daiger SP, etal., Clin Genet. 2013 Aug;84(2):132-41. doi: 10.1111/cge.12203. Epub 2013 Jun 19.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	MGD IEA	MGD IEA
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10391211	PMID:10401003	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11773008	PMID:11960024	PMID:12169685	PMID:12477932	PMID:12651948
PMID:14507858	PMID:14519200	PMID:15269252	PMID:16126734	PMID:16141072	PMID:16141073	PMID:16628014	PMID:16869982	PMID:19060274	PMID:19657028	PMID:19680541	PMID:19805139
PMID:20236041	PMID:20368623	PMID:20592197	PMID:21052544	PMID:21148103	PMID:21267068	PMID:21283520	PMID:21873635	PMID:22927954	PMID:23281133	PMID:24833722	PMID:25088982
PMID:26949938	PMID:27113764	PMID:29459677	PMID:29899041	PMID:32221352	PMID:32290105	PMID:32325033	PMID:32744119	PMID:33230847	PMID:36070393

Genomics

Comparative Map Data

Rp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	4,185,896 - 4,479,508 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	4,069,780 - 4,479,464 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	4,115,673 - 4,409,266 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	3,999,557 - 4,409,241 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	4,334,224 - 4,350,473 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	4,334,224 - 4,350,473 (-)	NCBI		MGSCv36	mm8
Celera	1	4,363,200 - 4,379,450 (-)	NCBI		Celera
Cytogenetic Map	1	A1	NCBI
cM Map	1	1.65	NCBI

RP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	54,559,185 - 54,871,234 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	54,509,422 - 54,871,720 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	55,471,745 - 55,783,794 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	55,691,180 - 55,705,947 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	55,691,179 - 55,705,947	NCBI
Celera	8	51,519,220 - 51,533,987 (+)	NCBI		Celera
Cytogenetic Map	8	q11.23-q12.1	NCBI
HuRef	8	50,996,864 - 51,011,630 (+)	NCBI		HuRef
CHM1_1	8	55,580,233 - 55,594,998 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	54,886,748 - 55,248,781 (+)	NCBI		T2T-CHM13v2.0

Rp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	19,918,728 - 20,380,811 (+)	NCBI		GRCr8
mRatBN7.2	5	15,121,104 - 15,582,363 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	15,121,133 - 15,579,363 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	17,359,324 - 17,375,651 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	18,956,553 - 18,972,879 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	18,693,943 - 18,710,270 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	15,005,028 - 15,060,508 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	15,043,955 - 15,060,508 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	19,789,094 - 19,844,587 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	15,393,101 - 15,401,890 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	14,541,674 - 14,558,002 (+)	NCBI		Celera
Cytogenetic Map	5	q12	NCBI

Rp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955454	13,781,556 - 14,082,310 (+)	NCBI	ChiLan1.0	ChiLan1.0

RP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	70,191,285 - 70,524,500 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	45,916,098 - 46,248,935 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	50,979,412 - 51,311,431 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	48,454,096 - 48,617,283 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	48,419,033 - 48,583,879 (+)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	8	48,419,033 - 48,583,879 (+)	NCBI	panpan1.1		panPan2

RP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	6,079,519 - 6,136,009 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	6,079,377 - 6,136,009 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	6,435,871 - 6,446,199 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	6,193,857 - 6,204,194 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	6,147,680 - 6,204,194 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	6,139,004 - 6,149,329 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	6,345,098 - 6,355,440 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	6,523,726 - 6,534,052 (+)	NCBI		UU_Cfam_GSD_1.0

Rp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	73,123,919 - 73,388,680 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936496	1,524,123 - 1,583,114 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	76,724,604 - 76,734,610 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	76,724,604 - 76,730,264 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	50,743,699 - 50,837,089 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	50,627,957 - 50,685,911 (+)	NCBI	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
ChlSab1.1 Ensembl	8	50,627,957 - 50,685,911 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	90,878,192 - 91,240,016 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	1,093,929 - 1,179,265 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	1,129,333 - 1,179,387 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rp1
15930 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	337
Count of miRNA genes:	259
Interacting mature miRNAs:	288
Transcripts:	ENSMUST00000027032
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1301275	Sle10_m	systematic lupus erythematosus susceptibility 10 (mouse)			Not determined		1	2882194	36882352	Mouse
15092046	Wngrme1_m	week nine growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1301370	Adip1_m	adiposity 1 (mouse)			Not determined		1	2882194	36882352	Mouse
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
15092044	Wtgrme1_m	week ten growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1301471	Obq2_m	obesity QTL 2 (mouse)			Not determined		1	3941620	37941887	Mouse
1301891	Alcp25_m	alcohol preference locus 25 (mouse)			Not determined		1	1	25203185	Mouse
1300834	Cia20_m	collagen induced arthritis 20 (mouse)			Not determined		1	1	25203185	Mouse
15092055	Lgrme1_m	late growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092050	Wsegrme1_m	week seven growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092051	Wegrme1_m	week eight growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092048	Wsigrme1_m	week six growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1301482	Morph1_m	morphine antinociception 1 (mouse)			Not determined		1	1	30367747	Mouse
10412226	Alpq4_m	alcohol preference QTL 4 (mouse)			Not determined		1	1	22976684	Mouse

Markers in Region

36.MMHAP82FRD12.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	4,333,493 - 4,333,675	UniSTS	GRCm38
MGSCv37	1	4,323,574 - 4,323,756	UniSTS	GRCm37
Celera	1	4,352,550 - 4,352,732	UniSTS
Cytogenetic Map	1	A1	UniSTS
Whitehead/MRC_RH	1	139.69	UniSTS

PMC122834P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	4,352,206 - 4,352,561	UniSTS	GRCm38
MGSCv37	1	4,342,287 - 4,342,642	UniSTS	GRCm37
Celera	1	4,371,264 - 4,371,619	UniSTS
Cytogenetic Map	1	A1	UniSTS
cM Map	1	6.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001195662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001370921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_011283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030252325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC113280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC132914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF146593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF155141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF291754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK044413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK044612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK141793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC028267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC096607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM937589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB845542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO425517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000027032 ⟹ ENSMUSP00000027032

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	4,414,369 - 4,430,537 (-)	Ensembl
GRCm38.p6 Ensembl	1	4,344,146 - 4,360,314 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000208660 ⟹ ENSMUSP00000146439

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	4,069,780 - 4,479,464 (-)	Ensembl
GRCm38.p6 Ensembl	1	3,999,557 - 4,409,241 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000208793

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	4,361,069 - 4,479,464 (-)	Ensembl
GRCm38.p6 Ensembl	1	4,290,846 - 4,409,241 (-)	Ensembl

RefSeq Acc Id:

NM_001195662 ⟹ NP_001182591

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	4,361,069 - 4,479,508 (-)	NCBI
GRCm38	1	4,290,846 - 4,409,241 (-)	NCBI
Celera	1	4,309,972 - 4,428,244 (-)	ENTREZGENE
cM Map	1		ENTREZGENE

Sequence:

show sequence

AAGCTCAGCCTTTGCTCAGATTCTCCTCTTGATGAAACAAAGGGATTTCTGCACATGCTTGAGA
AATTGCAGGTCTCACCCAAAATGAGTGACACACCTTCTACTAGTTTCTCCATGATTCATCTGAC
TTCTGAAGGTCAAGTTCCTTCCCCTCGCCATTCAAATATCACTCATCCTGTAGTGGCTAAACGC
ATCAGTTTCTATAAGAGTGGAGACCCACAGTTTGGCGGCGTTCGGGTGGTGGTCAACCCTCGTT
CCTTTAAGACTTTTGACGCTCTGCTGGACAGTTTATCCAGGAAGGTACCCCTGCCCTTTGGGGT
AAGGAACATCAGCACGCCCCGTGGACGACACAGCATCACCAGGCTGGAGGAGCTAGAGGACGGC
AAGTCTTATGTGTGCTCCCACAATAAGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGC
GCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGC
CAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGCTCGTGGTCTTCCGGAAT
GGTGACCCGAAGAATAAGCATGTGGTCCTTCTTAGCCGGAGGATCACTCAGAGCTTCGAAGCCT
TTCTGCAGTACCTGACACAGGTTATGCAGTGTCCTGTGGCCAAGCTGTATGCCACAGATGGAAG
AAAAGTTCCTAGTCTCCAGGCAGTGATACTCAGCTCTGGAGCTGTGGTGGCAGCTGGAAGGGAG
CCATTTAAACCAGGAAATTACGACATACAAAAGTACTTGCTTCCTGCCAAGTTACCAGGAATCT
CTCATCGTGTGCACCAGAAGGGAAAAGCCAAGATAGAAAAAAGAAAGAATTATGGTTGGGGACA
TAGGAACGCCGTTTAAGATTCGGGTTGGCCACACAAATTCTGGACATTCCCCTTCCTGGCACTG
TAAGAGGGTAAGGATATGATTTCATTTGTATTTTACACAAATGTTTCTGCAAATTCCTTCCAGG
AACCATGTTTCAGTGAGACATTTTATAAGTGCTGTGAATCAATGGAATCATTGAAGCTTTCCTC
AACAGAAGTAGTGCTTGCTCTCTTTAGTTAATTAATCCCAACTGACTGAAGGGAAACGCTTATA
CTCAGTAAAATTCTTCCTTTCTATAAAGAAAAGAGAATACTTGGTATCATGGAGAATCTCACAG
AGTTCTGGATTTATTTGTATTACTGTTAAATGTTGATGACAGGCATTGTTAAAATATGATAGTT
AAATATGATATTAACAGTTAAAAGATGACTGTCTCTACAGGATTTGCTTCTAAAATATGAAGAT
ACATCCACAGTGACACAGTGATCTTTTAGTCTTGAATGCCAGCTCTGGAATTTAGGAACCACAT
GCTAATCAGGAGAAAACCCTTTGAGCATTTTGTAAAGAAGAAGAAAAAAAAACCACTTAATTTT
TCTATGCTGTTTAAAGTAAAAAATTCTGCTTATTTTTGTGATTAGCAGTAAATATGATCACCTG
ACTAGATTTCCTATTTTGTGTTTTGGTGAATAATGAATTTACTTCTGCTATCATTAAAAATTGG
GGATCTTTAAGTGAAGTCGTCAAGAGTCAATGATCAGTGAATCTAATCCTAGCATTTTTGGTGT
AGTTTAGATGGGAATGCCCCTCATAGGTTCATATGTTTGATAACTCCAACCTCTTTACATACAC
ACACACACACATGCTTGGTGGGTGAAGCAAAGCTTCAACAAGAAGGTTTCATCAACTTTAGTTT
TCCTTCCACAGCTTATATATCCCAGCAAACTCTTTCAAGCTGTATGGAAATTACTATGTGACAT
TCTATTTTTCTTCAAGTGAATGGTTCAATGAGTATACACAAGAAAAATGTATTCTCAATAGTCT
TATATGAATAAACAGTATGTAGTATAGGCAAGAAAGAACACATTATTCCTAAGAACCCATATAC
ATTTGTAACAAAGCAAATTATAACAGATTAACAAAATGTAAGCAAGCAAGGTAATTTTTTCAGT
TAATTTCTCCTACTGGCAGGCTGTAATTTGTGGCTACAAAGAAAGGGTCAATTATTTTATTATT
TATATTAAAAGGTAATCTTAAATAAATCTTAAAAAGAATAAAAATCGAAGCTTTTAGATTTTCG
AAAACAATCAGTTTTTCTACTTTAAATCCTCGTAATGCAATCTATTCATCAACAAATATTATGA
AATCATATCAGGAAGCAGTGGGCAAAAATAAGCACAAGATATTAACCTTGATCACCAGTCCAGC
TTCAGCAAGAGTCATGTCAGCCAGTGCTATTCAGTTCTCTATTGTTCTTGTTCCTTGACCTTAA
AAATCCCTAGCTCAACTATTACGAATGTTCTTTTCTGAACTTCAATTTGCTCCTTAAGATTTTC
TACATCAGAGTCATTAACAAAAATATCTTAATGTAACTTCACTAACAATCTATTTTTCCAAATT
CTTTCTAAGGGTGGTGGTCATTGTCAACAATCTACATCTTTAAGTTCTTTCTAAGGGTGGGGAT
TGAATGATTAATCTGCTCTAGCAGCAATGATGGAAAAAGATCAAGCATTATTATTGTGAGTGCC
AGTCATACTGTCCAGTGAGAGTCTGGAAGCCCTGTTAGAGTTTTTATACAACTAGTATATTAGG
AAGACTATGAAGGCCTCAAGTCCAACAAGCAGACAAATTCTCCATAACAGCATGAAATCTTTAG
GATTTGATTCCATGAAGCTCTGCTTCTTCAAGGCATACCCATTGTGACTGTTCTAACCAGTGGA
CAACATTTCATGAGTTCTAAAGGTGTCTGTGGTCCCTTTCATACAGACCATGACAAGAGAAATC
CATATATGTAATAAACCACATAAACCAAAATCCACAATATCATCTCTGATGCCAAAAAGGCCAT
TGGCAAAAGCCAACATCATTTCATAATAAAAGTACTGGAGAGACTTGGGATATAAGAGATATAC
CTCTCCATAATAAACACAATATATTGCAAACCCACAGTC

hide sequence

RefSeq Acc Id:

NM_001370921 ⟹ NP_001357850

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	4,190,089 - 4,430,526 (-)	NCBI
GRCm38	1	4,119,866 - 4,360,303 (-)	NCBI

Sequence:

show sequence

AGACATTTGTTTACGTGAAACAAGCAGGTTGCATATCCAGTGACGTTTATACAGACCACACAAA
CTATTTACTCTTTTCTTCGTAAGGAAAGGTTCAACTTCTGGTCTCACCCAAAATGAGTGACACA
CCTTCTACTAGTTTCTCCATGATTCATCTGACTTCTGAAGGTCAAGTTCCTTCCCCTCGCCATT
CAAATATCACTCATCCTGTAGTGGCTAAACGCATCAGTTTCTATAAGAGTGGAGACCCACAGTT
TGGCGGCGTTCGGGTGGTGGTCAACCCTCGTTCCTTTAAGACTTTTGACGCTCTGCTGGACAGT
TTATCCAGGAAGGTACCCCTGCCCTTTGGGGTAAGGAACATCAGCACGCCCCGTGGACGACACA
GCATCACCAGGCTGGAGGAGCTAGAGGACGGCAAGTCTTATGTGTGCTCCCACAATAAGAAGGT
GCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATA
AGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCC
GTGCCCCAAGGAGGCTCGTGGTCTTCCGGAATGGTGACCCGAAGAATAAGCATGTGGTCCTTCT
TAGCCGGAGGATCACTCAGAGCTTCGAAGCCTTTCTGCAGTACCTGACACAGGTTATGCAGTGT
CCTGTGGCCAAGCTGTATGCCACAGATGGAAGAAAAGTTCCTAGTCTCCAGGCAGTGATACTCA
GCTCTGGAGCTGTGGTGGCAGCTGGAAGGGAGCCATTTAAACCAGGAAATTACGACATACAAAA
GTACTTGCTTCCTGCCAAGTTACCAGGAATCTCTCATCGTGTGCACCAGAAGGGAAAAGCCAAG
ATAGAAAAAAGAAAGAGTGGAAACTGGAAAGTTTCAATAAACACAAGTGACTTTCCAAATGCAG
GGACCAGCTCCCAGATTTATATTGTTTTATATGGACACTGTAGGAGTTCAGCACCTATATATCT
TTATGGAAGAGATGGGACTCGGTTTCAGGATGGACATGAAGACAATTTTACTATTATGGTTGGG
GACATAGGAACGCCGTTTAAGATTCGGGTTGGCCACACAAATTCTGGACATTCCCCTTCCTGGC
ACTGTAAGAGGATAGAATTGCAAAACATGAATTCTGGAGAAAAATTTTATATTCCTGTTCAAAG
ATGGCTGGCACAAGAGCAAGAGGATGGAGAAATCTGTCGAGAATTTCCTATTTTATGTAAAGGA
CAACCTGTCCTTCCAGTGACAACATACAAGGTATATATTACAACAGGGGAGCTCTGGAACTCTG
GAACAATAGCCAATGTCTACCTTTCTATCTATGGGGAAAAAGGAGATACAGGATCCAGGAAACT
CTTCAGATCAAAGAACTCTTCAAAGTTTTTAAGAGGACAAGTTGATACCTTCTTTCTAGAAGCT
GTAAACCTTGGAGATTTATGCAAGATTGTTATAGGCCATGATGGACTTGGGCAAGGAAATGGCT
GGTTTCTTGAGGATGTTGTGGTCAGGGATCCCACAACCAACCATGAGTATGCCTTCTTCTGTCA
CAGATGGCTGGATGAAGGAGAAGATGATGGTAAAATTGTCAGAGAAATGTATGCTAGGGATAAG
ACTATTTCCTCCATGAGAAAGAAGCTAGAACTTAAGAGAAAAGAAACATGGGCTGCTGACAGCT
GGAAGTTTATGAAAGGAAATACTCTTCAGTTTTACAACAAGCTCAGTGGAGGGTTTGTCCGTCT
TCATCCAGATGGCACGGTCGATGCTGCTGGGGAGCAGACAGACAGATATGGTCTTTTCGATGTG
ATTTTCAACAAAGGGAATATATGTGTTTTCCAAAGCCATGAGATGAGGCATCTCTCTCTTAACT
TTGACAATGGAATGGTTGGTGGAGGAGGCCACTCTGAGCTGCAGGTGATTTATCAGCCCAACCG
TTGTGTGCTTCTTGAGTCAGTGCTGCTTCCTGGGCACACCCTGACTGTTGATCGTCACGGCAAA
GTGACTGATGAGTCCTCTGCAGGCTACGCAGAGCTTTCAAAAGAATTCTTAGTTTTTGTTAAGG
GTGTATTCCTCAGCAGTGCTGTGGTTATACTCGCTACAAGCTTGTGTCAGGCCCTGTGTCTGCA
GCCCAATGGGACCTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGA
ATCAGTTCTGGGATCTGCATGTTTGAAAGTGTGAAAACTGCACGAATGTATCTGAGGATTAAGG
ATGGGTACTGTAATGGAATGGGCACTGGAGACACTGATTGCCATTTTAAAATCAAGAAGAATCT
GGAAAATGCATCTATAAGTCTGGAATCTCTGAAGAGCCCAGGACTGTTTGTTGGACTTCAACCA
GATGGACAGGCAAAACCTGTCATTTATACTAAAGATGAGAGTGTTTGCTTCTATCCACGTGTCA
TCCAATTTGGCAGAGAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGAC
CACACCACCAGAATCCAAGGCCAGATGTTCCTCACCATCATCATCAGAAAAAGAAAGCAAGCAT
CTGTGCAGGATTGAGACACTTCTGTTAGAAGAAAAATGGAAGGTCTTAGTGGTGACTGGAAACA
CAGGTACTCAGGCCAATGTCACATTGTGGGTGTATGGATATGAAGGTGTCACTGGACCAATCAG
CCTTACCAAGGACAGCCAAGAAAAGCTCTTCCTTCCAGGACAGACAGATGAATTTCAGGTTGTA
CTAAGAGGCATTGGAGAGATATACAAGATCAGAATAGGACATGATGGAACTGGTGGGCAACCAG
AGTGGACCTTACAGAGGGTGACAATGGAAAACGTGAAGAGCAAGAAGACCCTACATTTTGTTGC
AAATGTGTGTCTTTCTCGGAACCAGGCTGATGGAGACATTGTCTGTGAGCTTCCTGTAATGAAA
GAAGGAGAGCCTGTTTTTCCATTGGTGAGATACCATGTTGATGTGTATACGGGACAGTTGAAAC
AAGCAAAAACTGAGTCTGAAGTCTCCCTGTGTCTCTATGGGGAAAGGGGAGACTCTGGTCTTCG
ACTGTTGCACAGATCCAACATGCCTGTACGATTTCAAAGAGGACAGATTGATGCATTTCAGATC
GAAGCAGTGTCTCTAGGAAACCTACAGAAGGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCC
AGTACTGGTACTGTGAGAAGATCATCGTCAAAGATCCAGGCAGCTCCTCAGAATCCATCTTCAC
CTGTGAGAGGTGGATTCCCTTCATGTCCGAAGGCTTAATGCATTCAGAAATTGAACTTTATTGT
CAAGGTGAGGATTAAGGCAACTCTCAGTGGAAGAAAGTGCAAGATGATTTTGTTACAACCAAGC
ATCATGGAAGATAACCTCCTGTGATATCCCAGAATGTCCCCATTGCTAATGTGACATGGACATT
ACAGAGAATATACAAATATTTGGAA

hide sequence

RefSeq Acc Id:

NM_011283 ⟹ NP_035413

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	4,414,373 - 4,430,526 (-)	NCBI
GRCm38	1	4,343,507 - 4,360,314 (-)	NCBI
MGSCv37	1	4,334,224 - 4,350,473 (-)	RGD
Celera	1	4,309,972 - 4,428,244 (-)	ENTREZGENE
cM Map	1		ENTREZGENE

Sequence:

show sequence

AATAAATCCAAAGACATTTGTTTACGTGAAACAAGCAGGTTGCATATCCAGTGACGTTTATACA
GACCACACAAACTATTTACTCTTTTCTTCGTAAGGAAAGGTTCAACTTCTGGTCTCACCCAAAA
TGAGTGACACACCTTCTACTAGTTTCTCCATGATTCATCTGACTTCTGAAGGTCAAGTTCCTTC
CCCTCGCCATTCAAATATCACTCATCCTGTAGTGGCTAAACGCATCAGTTTCTATAAGAGTGGA
GACCCACAGTTTGGCGGCGTTCGGGTGGTGGTCAACCCTCGTTCCTTTAAGACTTTTGACGCTC
TGCTGGACAGTTTATCCAGGAAGGTACCCCTGCCCTTTGGGGTAAGGAACATCAGCACGCCCCG
TGGACGACACAGCATCACCAGGCTGGAGGAGCTAGAGGACGGCAAGTCTTATGTGTGCTCCCAC
AATAAGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTA
GTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACC
TGGCATGCTCCGTGCCCCAAGGAGGCTCGTGGTCTTCCGGAATGGTGACCCGAAGAATAAGCAT
GTGGTCCTTCTTAGCCGGAGGATCACTCAGAGCTTCGAAGCCTTTCTGCAGTACCTGACACAGG
TTATGCAGTGTCCTGTGGCCAAGCTGTATGCCACAGATGGAAGAAAAGTTCCTAGTCTCCAGGC
AGTGATACTCAGCTCTGGAGCTGTGGTGGCAGCTGGAAGGGAGCCATTTAAACCAGGAAATTAC
GACATACAAAAGTACTTGCTTCCTGCCAAGTTACCAGGAATCTCTCATCGTGTGCACCAGAAGG
GAAAAGCCAAGATAGAAAAAAGAAAGATGAGCACACATATGCCTTCAGACCTAAGACCCCAGAC
TGATTCCCTGATCTCGGAGAAAACATATGATTGCTTTTCAGATTTTTCTGTAGCCCCTGAGAAT
TACTTGGCCTTAGAAACACATGAGTCTCAGTCTCTATCAACTTATCCTTCTGAAGATGATGTTG
AGAAATCGATTGTTTTTAATCAAGATGGTACGATGACGGTCGTGATGAAAGTTCGATTCAAGAT
AAAAGAAGAAGAAACTGTTAAGTGGACAACAACTGTCAATAGAGCTGGTCTTTCTAATAATGAT
GAAAAGAATAAGAAAAGTAGTTATCCTGGAAAAACAGATTATGGACCATCTAGTTTAAAGCTTG
AAGCATGTTCGTTGCCTGAAGACATCGTAGATACCACTCAGCAGGGCAGTTTGACAGAGGAAGA
AAATACTCAAATGACAGAGCAGCAGGCTCTGTCATGTAGCTCTGCTAGTTGGGAGAATGCCTCT
ATGGAGACAGACATTCAGGAAAGCCAGAAACAAGTGAAACACTTTTATAGACCCCCAACTCCTG
GACCAAGGAGAATGAGACAAAAGAAATCTGTGATAGGGACTGTCACAGTAGTATCTGAAACAGA
GGTTCAAGAAAAGCAGTTTTCCTATAGTGAAGAAAGAAAGGGTGGAGAAAAATCTGAGTATCAT
ATGTTTACACATTCTTGCAGTAAAATGTCATCAGTATCTAATAAACTTGTTCAGATCGGTAGCG
ATAATGAGATGGAGTCAGCATTAGAAAGAACAAGGGAAAGTGGATCACTCAAGTCACAGGCCAT
AAATGCTGGTGCTATTGAAATTACAAGTCAGAAGGTCTTAAAGATGTGCCACAACAATGCTTTA
CCGTCAACTGCACCAGAGAACTCAGTCGTGGAAGAAGGCACAGACAACAGTGCAGTATCAGGCA
CAGCCACTATCAAGCACTTCAGAACTTGTGGTAATGCCAATGACAGCTTCAGTTCTATCACAGC
AGATTCAACTCCTACCTCAGTTAACAATTATTCAAATGACAGAAATATTTCTGAGCTTCCTTCT
GTAGGATCTCCTGTACTCACCATGAGACTTGTTAATGAATTTGCTCATTGTGGTTTAACAGAAA
AACCAGAAAACAGAAAGAAGGTTTTATCTTCTTCTGCTAGCAAGAAGAAGAAAAAGAAATCTCA
GCAGCGAATGATAACTTCCAATGATAAGAAAAAAGTGATTGAAACCAAAGGACCCCCAAATATA
GCTGGGAAGATACCCAGAGCTGGAACAACTGCACAGGAAAGACTATTGCAAGAATCAGACTGTC
CTGATAAAGGAGGAAGAGTTTGTGAGCAGGGCCTTAATATAAGTCCTATGGCAATTGAATCAAA
TAATTTTTTTCCCAAAAGTAATCCCACATTTTCTAAGAATTTCTATAAAAATAAATTAAATACT
TTTCAAAATCCTAAGACTCAAAAACTTTTGGCCAAAAGAAAATCAAGGCCACGAAAGATTGTAA
GCACAGAAAGACTCAGAAAACAAGAGATTGGTCAAGAAGATAAAATACTTCTCCATAGTGACTC
GAAACTCTGTGAAAGTCATTTGGAAAAACAAAGTTTATTTCATGTGTTTAATATCCTTGAAGAA
GATCAGAAAGTTTTGCACAGACCACCGTTCCAAGTGGAGAAAGTAGCTAGAAATTTGAAAGGAA
TGGCAAAAAAGAGTTTAGTCCCAAAAGTCAATGATTTACACATAATGTTAAGAAACCAGAAAAA
ACAAATGGGAGTTAAATTAAAGTCAGGTGCTGAGGTAAGTGAACAGCATGTTACAACCAGGGCA
GATCCATTAGCTTCTCTGAAAAAACCTGATTTTCCTGAGGGCATTCCCCATCATTCAGGTAAAA
GCTATGTAAAGCGATGGTTGCAGAACATAAACTCATATCCAGATTTTGAGCATAGAAAGTCCGG
TCCACTATGCCAAAATAGAAGTGATGTGGTAAATTATAACCGCAATGGCTTTCTAGGAAATAAT
CTCCATACAACTTCTTCAAAAGGAAATGGTTTTTTAATGGAAAGTAATAAGAGCAAAACTAAAA
ACGACAATTGGTCAGGCAATACAAATCAAGAGACAGGTAAATCTCTTGTTGCTAAAGATAATGG
TGAAGAGCTCAATAAACATCACTGTGAGAGCCAGAATGGGTCTCTGTATGATTCTTACTTGGTT
TCTTTGCATGACAATTGTACTTTGTCACAGACCACTATTAATGAGCCTAGTACTAAAAGTCATT
TATCTATTGAAAAGTCAAGACCAGAAGTAAAGCTTGTTTACCAAGAAATGAACTTTGCTACAAA
AAGGCAAAGTATTGAAGTTGCCATTCAGGTAGATACTATGGGAGAAAATGTTCTAAAAGACTAC
TTACCAGCCTTGTTGCTACGGCACCTGGAAGCTTTTGTTCCTAATAATCAGAAACATCAGAATG
GAATTTCTCAAATACCAGGTTCATTAGCAGAGGTTGTCTTCCCTTCTGTAATAGATAATTCATC
CACAAATCTCCTTCTGGCTTGGCTTTTGGTACTAAACCTAAAGAGAACTATGAATAGCTTCTGT
CAAAGTGATGCTCATAAGATGACCAACAGACCTTCGGAAACTGCTGCATTGTTGGAAGTTCTGA
AGCATGTTGCCATCACAGAGGAAGCTGATGACTTGAAGGCTGCTGTTGCCAACTTGATGGAATC
AACCAAAACTTGCAGTGGGTCCAGTGGGAGAGAACAAGATATGCTACCAGTAAATTGTACAGCA
TCCAGCCTTCATAGTGTGGACGAGTGTAATGAAAATGGGAGTGCTCAGAAGACCCTCTTGGATG
AAGGCTATTCTGTCATGGGGGATTGTACCTCAGAAATGGTTAGCAAGTCATGTAACTCCTCATG
TGAGATGCACATGGTGAGCAAAACTAATCCTCCAAAACAGGTAGATGACCAGAGTGATGGCCTT
CTTACTAGCAATAGCTGCACTGTGAGTCAGCGCTCCACAGGGGCCTGTTTCCTTACAGATGGGG
TGTATTCCCATGAGGCTTGTGCTCAGAAGGAGGGCGTCTATGAGGGAGCTTGCCTAAGTGATGA
GACTCACATTCCTATCAGAGACTGCCATACAATTCACTCTGTGCATTCAAAAGAAAACAAATGC
ACTGATGATCTGGAATCAACTGAAGAACTCAAAACTGTTGACAAAGTTCCAAAAGGTCTAAGCA
TTCTGGCAGATTCTATGTATAAAAATGACTCTAATGTATCTACATTTCAAAATGTCAATAAGTT
AAGTTCCCAACGCACTCTCCTAAGTAAAACTTATCTAGACTCTGATAAGGACTATAGTCCTCTA
GAAGAATTTCAAAATTGCCCACGTAAGAAAATTGTGAATAAAAAGAAATCTATTTCTTCTGATA
AGGAAGAATCAAGGACTTCTGAGGAACCAAGGTCAATAACCAATAGCATGACATCAAGTGAAAG
AAATGCCATTTCAGAATTAGAATCTTTTGAAGAATTAGAAAGCCAAGACACAAGTATCTTCAAT
ATGAATGTAAGGGCTGAAAAAAAATCTACCAAGGAAACGATGCAAAAACAATCAGAGGCTAGGA
TGAGTTCAGAATTGATAAACGTATCAGGGAGGAAAATTATAGAACAGGAAAGAAGAAATACTGC
CATTCTGGAGACAACCGCTAGGGGGCAGGTGACACCACCATCTTTAGCTTTTTGCTACGATTCT
AACAAAAACACCGAAAAAGAGATCAGTGAAGGAGAAACTAAGATGAGAGTTAAGAAGATGGTAG
ACAGCATGGAAAATGAAAGTTACTCGGAGTCCTCACTTAATTTTAAAAAACATCACAGAAGTCC
AGGAACCTTAGACTGGTCAGACTATGGATCAGATAGTGAGAGTGGATATCCTTGTAAAGCATCG
AGCAATAGTCACAATGATGACTCTGGCCAAGAGAAAGAGCCCACAAGAGGAATTGTTAAAAGAG
CAATAGAAAAGCTTTATGGCAAAGCAGAGATTATCAAACCACCATTTTTCCATGGGTCTATACA
CAAATCTCAAGTTTGTCCTTATAATTCTGTGGAAGTTCAGTGTGCTAAGAAAACCAATTTTTAT
GAGTCTGAATGCCAGTCATTGGTCTCTTCTGAACAGGTATCCAGAAGTTCACTCATATTTCAGG
AATTCCCTCAGGTTGATGCTAATGGCATGGGAGACAGTTTTGGGGACAGCAGCATAGAAAATGT
TACAAAATCAAGTGCGCATGACAGGGTCTTTACAGAAAAAGAGAATGGAAAACTGATTGACAAT
GGCAAATGGCTCCTGAGAGAAAATCATTTGTGGCGGGTGTCATCGGACAATCCTGGCATGTACG
GCAATGCAGACACCACATCAGTGGATACTCTAATAGATAAGAACAGCATTGAGGTGCCATATTC
ACATTTCGGAGAGCTGGCTCCTGGTCCAACAATGGCTGAACTGTCCTCTTCAGAAATAGAGGAA
ATGACTCAACCCCTTGAAGTGAAATGCAATTATTTTAACTTCCCTCATGGTAGTGACTCTGAGC
CTTTTGGTGAAGATTTTCCAGATGCACAGAATAAAACTTGTCCCAAAGAGAAAATACCCAACCA
TCACACAGAGGAGAAGGGTAATTATCCATCGGAAAGACTGTGTACATCTGTTACTCAAGCCTTT
GTTTCTGCTGGTAATAAAGTCCACCCGGTCTGCAGTGACGCTATTAAAACTCAGCCATTACCTG
GGAGTAACATCACTCACGGCGCACTTCAGGAAGGTGACTCTTTGGATAAACTCTATGCTCTTTG
TGGTCAACATTGTCCGATACTAACTGTTATTATTCAACCTGTAAATGAGGAAAGCCGAGGATTT
GCTTATCGCAAAGATTCTGATATTGAAAATTCTTTGGATTTTCAGTTATGGATGAAAATATACC
CATTTATGCCACAGTCAAAGAAACACGTGTTTAGAAGTGATGGCAGGAATGTGAGTGTGGGTGA
AGAATTTGCTGGTAATGTCATTGGTGATCTCTGTGATCAACTTTATTTCAAAAGCATGATTGAC
TTAGTGGATCAAAGAGCTAACTCTTTAGGGAAGGAAATTAATTTGAAGAAATTCCAACTATATT
TAAAGAAAAGCTTTTCCGATCCTTTGTCCACGTCATTGCTAGTGGTGGAGAATAGGAATTCTGT
TTCACTAAGCCCTAGCAGTTGGACAGATAACTTCAAAAGTATTGATGAGAATAACAACTTCCTT
AACAGATTACCGAACTCAAGTAAAAATCCCAACCAAGTAGTAAGAGAGAACACTAATTTTCAGT
TCCACTTAGAACTGTTTGGTCAAGTTTACTTGTTAGATATTTGCCAAGTTGAGAAACCCTTAAA
TATCAAAACCAGAAGTAAATTAGAAATGTATTACATTTTAGAGGGTGAAGTTCTTTTCATCTGG
GAAGAAGAAAAATGAATTAAATATAATAGATACTGAAGGCCCTAATGAGTGGGATGATTTATAA
TTTCAGTATTCACACAATCACCAGCTGTCAATATGTTTTTCCCATAAAAAGATGCAGTACATGG
GATAGAATTTAGCATACATTCTCTAAGAATTTCTTACTCTTTCAAAATGAGAATACTCTGGAAA
ACGTATTTTTGGAAAAAATGGATTTGGTTTTCTTCATTGCTTTGCTCCTCATTTTCTCAGTAAA
GTTTTATGTAGTTTCATTGTAAACAGATAATTTTGCATAGCTATGACTTTGTTATCAGGATATC
AGAAATATGGTCAGGACAAGAAATATATCCTTAAAATATTGTCTAGTACATATATATGTTGAAT
ATATTAATGGGTAAATGTAACTTTAAACTACTTCATTTATTAATGTAAGTGCTGATTTAATAAA
AAGTATTATTAAACCTTTCCAGAACAATCTGCTAGTTTTTTGTACCAGAGAGTTGGCTCCTGTT
TCCTCAGAACAAACTGAAGTTCCTAAGTATTCTGTAGGACACTATTCACCATTTTCACACAAAA
AAGAATACATCAGTACGAACTTGTCCCTGTCCCAGAAATTATAATCTTTAAACTAAAAAAAATT
AATATATTTAAAAAAGTTTACATTTGTAGTTAAAATATATAATTACAGCACTTCCCCCTTCCTT
CCCCCACTTCAACCAACCCCTCCTATGTCCACTCCCTCCAACCCCTCCTGTTCTTCCAATTCTC
AAATTGATAGCCCCTTGGTTATTGCTGTTACATGTGCAGGGAAGGAATGCTTAAGCACAGCCAA
CTGTTTCCATCTTGTTGTTTGTTGTATGTATGGTTTCCAGGCTGGCTACTTTGTACTGGATAAC
CAATTAGGAGACTCATTGCTGGGAAAGGCTAATATGTCCTCTCTCAGCACTCATTATTTGCTTA
AAGTTCTTTATCTAGGGGTCAAACCCCATGGAATTTCACTTTTCTGTGTTAGCATTCTTTATTG
ACAATGCTATTGTGTTTTGTTTACGCAGTCATATCTAAAAGAGGTAGGCTCACAGAGGACTTCC
TTGTTTTCTGTCTCTTACAC

hide sequence

RefSeq Acc Id:

XM_030252325 ⟹ XP_030108185

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	4,185,896 - 4,479,489 (-)	NCBI
GRCm38	1	4,119,738 - 4,409,266 (-)	NCBI

Sequence:

show sequence

CCAACAGACAGGACAGACTCATAGCAAGCTCAGCCTTTGCTCAGATTCTCCTCTTGATGAAACA
AAGGGATTTCTGCACATGCTTGAGAAATTGCAGGTCTCACCCAAAATGAGTGACACACCTTCTA
CTAGTTTCTCCATGATTCATCTGACTTCTGAAGGTCAAGTTCCTTCCCCTCGCCATTCAAATAT
CACTCATCCTGTAGTGGCTAAACGCATCAGTTTCTATAAGAGTGGAGACCCACAGTTTGGCGGC
GTTCGGGTGGTGGTCAACCCTCGTTCCTTTAAGACTTTTGACGCTCTGCTGGACAGTTTATCCA
GGAAGGTACCCCTGCCCTTTGGGGTAAGGAACATCAGCACGCCCCGTGGACGACACAGCATCAC
CAGGCTGGAGGAGCTAGAGGACGGCAAGTCTTATGTGTGCTCCCACAATAAGAAGGTGCTGCCA
GTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGC
ATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCC
AAGGAGGCTCGTGGTCTTCCGGAATGGTGACCCGAAGAATAAGCATGTGGTCCTTCTTAGCCGG
AGGATCACTCAGAGCTTCGAAGCCTTTCTGCAGTACCTGACACAGGTTATGCAGTGTCCTGTGG
CCAAGCTGTATGCCACAGATGGAAGAAAAGTTCCTAGTCTCCAGGCAGTGATACTCAGCTCTGG
AGCTGTGGTGGCAGCTGGAAGGGAGCCATTTAAACCAGGAAATTACGACATACAAAAGTACTTG
CTTCCTGCCAAGTTACCAGGAATCTCTCATCGTGTGCACCAGAAGGGAAAAGCCAAGATAGAAA
AAAGAAAGAGTGGAAACTGGAAAGTTTCAATAAACACAAGTGACTTTCCAAATGCAGGGACCAG
CTCCCAGATTTATATTGTTTTATATGGACACTGTAGGAGTTCAGCACCTATATATCTTTATGGA
AGAGATGGGACTCGGTTTCAGGATGGACATGAAGACAATTTTACTATTATGGTTGGGGACATAG
GAACGCCGTTTAAGATTCGGGTTGGCCACACAAATTCTGGACATTCCCCTTCCTGGCACTGTAA
GAGGATAGAATTGCAAAACATGAATTCTGGAGAAAAATTTTATATTCCTGTTCAAAGATGGCTG
GCACAAGAGCAAGAGGATGGAGAAATCTGTCGAGAATTTCCTATTTTATGTAAAGGACAACCTG
TCCTTCCAGTGACAACATACAAGGTATATATTACAACAGGGGAGCTCTGGAACTCTGGAACAAT
AGCCAATGTCTACCTTTCTATCTATGGGGAAAAAGGAGATACAGGATCCAGGAAACTCTTCAGA
TCAAAGAACTCTTCAAAGTTTTTAAGAGGACAAGTTGATACCTTCTTTCTAGAAGCTGTAAACC
TTGGAGATTTATGCAAGATTGTTATAGGCCATGATGGACTTGGGCAAGGAAATGGCTGGTTTCT
TGAGGATGTTGTGGTCAGGGATCCCACAACCAACCATGAGTATGCCTTCTTCTGTCACAGATGG
CTGGATGAAGGAGAAGATGATGGTAAAATTGTCAGAGAAATGTATGCTAGGGATAAGACTATTT
CCTCCATGAGAAAGAAGCTAGAACTTAAGAGAAAAGAAACATGGGCTGCTGACAGCTGGAAGTT
TATGAAAGGAAATACTCTTCAGTTTTACAACAAGCTCAGTGGAGGGTTTGTCCGTCTTCATCCA
GATGGCACGGTCGATGCTGCTGGGGAGCAGACAGACAGATATGGTCTTTTCGATGTGATTTTCA
ACAAAGGGAATATATGTGTTTTCCAAAGCCATGAGATGAGGCATCTCTCTCTTAACTTTGACAA
TGGAATGGTTGGTGGAGGAGGCCACTCTGAGCTGCAGGTGATTTATCAGCCCAACCGTTGTGTG
CTTCTTGAGTCAGTGCTGCTTCCTGGGCACACCCTGACTGTTGATCGTCACGGCAAAGTGACTG
ATGAGTCCTCTGCAGGCTACGCAGAGCTTTCAAAAGAATTCTTAGTTTTTGTTAAGGGTGTATT
CCTCAGCAGTGCTGTGGTTATACTCGCTACAAGCTTGTGTCAGGCCCTGTGTCTGCAGCCCAAT
GGGACCTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTT
CTGGGATCTGCATGTTTGAAAGTGTGAAAACTGCACGAATGTATCTGAGGATTAAGGATGGGTA
CTGTAATGGAATGGGCACTGGAGACACTGATTGCCATTTTAAAATCAAGAAGAATCTGGAAAAT
GCATCTATAAGTCTGGAATCTCTGAAGAGCCCAGGACTGTTTGTTGGACTTCAACCAGATGGAC
AGGCAAAACCTGTCATTTATACTAAAGATGAGAGTGTTTGCTTCTATCCACGTGTCATCCAATT
TGGCAGAGAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCA
CCAGAATCCAAGGCCAGATGTTCCTCACCATCATCATCAGAAAAAGAAAGCAAGCATCTGTGCA
GGATTGAGACACTTCTGTTAGAAGAAAAATGGAAGGTCTTAGTGGTGACTGGAAACACAGGTAC
TCAGGCCAATGTCACATTGTGGGTGTATGGATATGAAGGTGTCACTGGACCAATCAGCCTTACC
AAGGACAGCCAAGAAAAGCTCTTCCTTCCAGGACAGACAGATGAATTTCAGGTTGTACTAAGAG
GCATTGGAGAGATATACAAGATCAGAATAGGACATGATGGAACTGGTGGGCAACCAGAGTGGAC
CTTACAGAGGGTGACAATGGAAAACGTGAAGAGCAAGAAGACCCTACATTTTGTTGCAAATGTG
TGTCTTTCTCGGAACCAGGCTGATGGAGACATTGTCTGTGAGCTTCCTGTAATGAAAGAAGGAG
AGCCTGTTTTTCCATTGGTGAGATACCATGTTGATGTGTATACGGGACAGTTGAAACAAGCAAA
AACTGAGTCTGAAGTCTCCCTGTGTCTCTATGGGGAAAGGGGAGACTCTGGTCTTCGACTGTTG
CACAGATCCAACATGCCTGTACGATTTCAAAGAGGACAGATTGATGCATTTCAGATCGAAGCAG
TGTCTCTAGGAAACCTACAGAAGGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCCAGTACTG
GTACTGTGAGAAGATCATCGTCAAAGATCCAGGCAGCTCCTCAGAATCCATCTTCACCTGTGAG
AGGTGGATTCCCTTCATGTCCGAAGGCTTAATGCATTCAGAAATTGAACTTTATTGTCAAGAAA
TGCAAATAAATCATCCACCTAAAATTCAAGAGGAAGCAAATGGCTCATTTGTTTGAAGACTTGG
CTTCTAGCTGAAAGTGCATTTTGGAGTTGTGGAACCTATAGGTGATATGGTCCCAGCTGAAGGA
AGTGGCTTACAAGGAGTCAGGCACTGTGTGTTAAAACCCAGCCCTGTCCCTGGTCCAAACTTAC
TACTTCCTGGTCAACTGATTTACAAGAAATCTCAACTATATCCTCCTGCTGCTGTGAAGTCTCC
TATGCCTTTTTCACCGCGGTGAACTGTACTATCTCAAGTTCTGGGTCAAAATAAATCCATCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001182591	(Get FASTA)	NCBI Sequence Viewer
	NP_001357850	(Get FASTA)	NCBI Sequence Viewer
	NP_035413	(Get FASTA)	NCBI Sequence Viewer
	XP_030108185	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD42089	(Get FASTA)	NCBI Sequence Viewer
	AAD46770	(Get FASTA)	NCBI Sequence Viewer
	AAH28267	(Get FASTA)	NCBI Sequence Viewer
	AAH96607	(Get FASTA)	NCBI Sequence Viewer
	AAI20928	(Get FASTA)	NCBI Sequence Viewer
	AAI20929	(Get FASTA)	NCBI Sequence Viewer
	AAM17919	(Get FASTA)	NCBI Sequence Viewer
	BAC31909	(Get FASTA)	NCBI Sequence Viewer
	BAC32003	(Get FASTA)	NCBI Sequence Viewer
	EDL14239	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000027032
	ENSMUSP00000027032.5
	ENSMUSP00000146439
	ENSMUSP00000146439.2
GenBank Protein	P56716	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_035413 ⟸ NM_011283
- Peptide Label:	isoform 1
- UniProtKB:	Q548Q8 (UniProtKB/Swiss-Prot), P56716 (UniProtKB/Swiss-Prot), Q4VA02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTPSTSFSMIHLTSEGQVPSPRHSNITHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKTFDA LLDSLSRKVPLPFGVRNISTPRGRHSITRLEELEDGKSYVCSHNKKVLPVDLDKARRRPRPWLS SRSISTHVQLCPATANMSTMAPGMLRAPRRLVVFRNGDPKNKHVVLLSRRITQSFEAFLQYLTQ VMQCPVAKLYATDGRKVPSLQAVILSSGAVVAAGREPFKPGNYDIQKYLLPAKLPGISHRVHQK GKAKIEKRKMSTHMPSDLRPQTDSLISEKTYDCFSDFSVAPENYLALETHESQSLSTYPSEDDV EKSIVFNQDGTMTVVMKVRFKIKEEETVKWTTTVNRAGLSNNDEKNKKSSYPGKTDYGPSSLKL EACSLPEDIVDTTQQGSLTEEENTQMTEQQALSCSSASWENASMETDIQESQKQVKHFYRPPTP GPRRMRQKKSVIGTVTVVSETEVQEKQFSYSEERKGGEKSEYHMFTHSCSKMSSVSNKLVQIGS DNEMESALERTRESGSLKSQAINAGAIEITSQKVLKMCHNNALPSTAPENSVVEEGTDNSAVSG TATIKHFRTCGNANDSFSSITADSTPTSVNNYSNDRNISELPSVGSPVLTMRLVNEFAHCGLTE KPENRKKVLSSSASKKKKKKSQQRMITSNDKKKVIETKGPPNIAGKIPRAGTTAQERLLQESDC PDKGGRVCEQGLNISPMAIESNNFFPKSNPTFSKNFYKNKLNTFQNPKTQKLLAKRKSRPRKIV STERLRKQEIGQEDKILLHSDSKLCESHLEKQSLFHVFNILEEDQKVLHRPPFQVEKVARNLKG MAKKSLVPKVNDLHIMLRNQKKQMGVKLKSGAEVSEQHVTTRADPLASLKKPDFPEGIPHHSGK SYVKRWLQNINSYPDFEHRKSGPLCQNRSDVVNYNRNGFLGNNLHTTSSKGNGFLMESNKSKTK NDNWSGNTNQETGKSLVAKDNGEELNKHHCESQNGSLYDSYLVSLHDNCTLSQTTINEPSTKSH LSIEKSRPEVKLVYQEMNFATKRQSIEVAIQVDTMGENVLKDYLPALLLRHLEAFVPNNQKHQN GISQIPGSLAEVVFPSVIDNSSTNLLLAWLLVLNLKRTMNSFCQSDAHKMTNRPSETAALLEVL KHVAITEEADDLKAAVANLMESTKTCSGSSGREQDMLPVNCTASSLHSVDECNENGSAQKTLLD EGYSVMGDCTSEMVSKSCNSSCEMHMVSKTNPPKQVDDQSDGLLTSNSCTVSQRSTGACFLTDG VYSHEACAQKEGVYEGACLSDETHIPIRDCHTIHSVHSKENKCTDDLESTEELKTVDKVPKGLS ILADSMYKNDSNVSTFQNVNKLSSQRTLLSKTYLDSDKDYSPLEEFQNCPRKKIVNKKKSISSD KEESRTSEEPRSITNSMTSSERNAISELESFEELESQDTSIFNMNVRAEKKSTKETMQKQSEAR MSSELINVSGRKIIEQERRNTAILETTARGQVTPPSLAFCYDSNKNTEKEISEGETKMRVKKMV DSMENESYSESSLNFKKHHRSPGTLDWSDYGSDSESGYPCKASSNSHNDDSGQEKEPTRGIVKR AIEKLYGKAEIIKPPFFHGSIHKSQVCPYNSVEVQCAKKTNFYESECQSLVSSEQVSRSSLIFQ EFPQVDANGMGDSFGDSSIENVTKSSAHDRVFTEKENGKLIDNGKWLLRENHLWRVSSDNPGMY GNADTTSVDTLIDKNSIEVPYSHFGELAPGPTMAELSSSEIEEMTQPLEVKCNYFNFPHGSDSE PFGEDFPDAQNKTCPKEKIPNHHTEEKGNYPSERLCTSVTQAFVSAGNKVHPVCSDAIKTQPLP GSNITHGALQEGDSLDKLYALCGQHCPILTVIIQPVNEESRGFAYRKDSDIENSLDFQLWMKIY PFMPQSKKHVFRSDGRNVSVGEEFAGNVIGDLCDQLYFKSMIDLVDQRANSLGKEINLKKFQLY LKKSFSDPLSTSLLVVENRNSVSLSPSSWTDNFKSIDENNNFLNRLPNSSKNPNQVVRENTNFQ FHLELFGQVYLLDICQVEKPLNIKTRSKLEMYYILEGEVLFIWEEEK hide sequence

RefSeq Acc Id:	NP_001182591 ⟸ NM_001195662
- Peptide Label:	isoform 2
- UniProtKB:	A0A0A6YXU6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEKLQVSPKMSDTPSTSFSMIHLTSEGQVPSPRHSNITHPVVAKRISFYKSGDPQFGGVRVVV NPRSFKTFDALLDSLSRKVPLPFGVRNISTPRGRHSITRLEELEDGKSYVCSHNKKVLPVDLDK ARRRPRPWLSSRSISTHVQLCPATANMSTMAPGMLRAPRRLVVFRNGDPKNKHVVLLSRRITQS FEAFLQYLTQVMQCPVAKLYATDGRKVPSLQAVILSSGAVVAAGREPFKPGNYDIQKYLLPAKL PGISHRVHQKGKAKIEKRKNYGWGHRNAV hide sequence

RefSeq Acc Id:	XP_030108185 ⟸ XM_030252325
- Peptide Label:	isoform X1
- UniProtKB:	A0A140LHJ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001357850 ⟸ NM_001370921
- Peptide Label:	isoform 3

Ensembl Acc Id:

ENSMUSP00000027032 ⟸ ENSMUST00000027032

Ensembl Acc Id:

ENSMUSP00000146439 ⟸ ENSMUST00000208660

Protein Domains

Doublecortin PLAT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P56716-F1-model_v2	AlphaFold	P56716	1-2095	view protein structure

Promoters

RGD ID:

6873104

Promoter ID:

EPDNEW_M2

Type:

initiation region

Name:

Rp1_2

Description:

Mus musculus retinitis pigmentosa 1 , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M3

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	4,360,265 - 4,360,325	EPDNEW

RGD ID:

6873106

Promoter ID:

EPDNEW_M3

Type:

initiation region

Name:

Rp1_1

Description:

Mus musculus retinitis pigmentosa 1 , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	4,409,264 - 4,409,324	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1341105	AgrOrtholog
Ensembl Genes	ENSMUSG00000025900	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000027032	ENTREZGENE
	ENSMUST00000027032.6	UniProtKB/Swiss-Prot
	ENSMUST00000208660	ENTREZGENE
	ENSMUST00000208660.2	UniProtKB/TrEMBL
	ENSMUST00000208793	ENTREZGENE
Gene3D-CATH	2.80.10.50	UniProtKB/TrEMBL
	3.10.20.230	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Catalase core domain	UniProtKB/TrEMBL
	PLAT/LH2 domain	UniProtKB/TrEMBL
InterPro	Cytokine_IL1-like	UniProtKB/TrEMBL
	Doublecortin_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Doublecortin_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Inner_ear_hair_cell_LOXHD	UniProtKB/TrEMBL
	PLAT/LH2_dom	UniProtKB/TrEMBL
	PLAT/LH2_dom_sf	UniProtKB/TrEMBL
KEGG Report	mmu:19888	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1341105	ENTREZGENE
NCBI Gene	19888	ENTREZGENE
PANTHER	LIPOXYGENASE HOMOLOGY DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	OXYGEN-REGULATED PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN CBG12474	UniProtKB/TrEMBL
	PTHR23005	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DCX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLAT	UniProtKB/TrEMBL
PhenoGen	Rp1	PhenoGen
PROSITE	PLAT	UniProtKB/TrEMBL
	PS50309	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	DCX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LH2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49723	UniProtKB/TrEMBL
	SSF50353	UniProtKB/TrEMBL
	SSF89837	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0A6YXU6	ENTREZGENE
	A0A140LHJ6	ENTREZGENE, UniProtKB/TrEMBL
	P56716	ENTREZGENE
	Q4VA02	ENTREZGENE, UniProtKB/TrEMBL
	Q548Q8	ENTREZGENE
	Q8BXN6_MOUSE	UniProtKB/TrEMBL
	Q8BXR8_MOUSE	UniProtKB/TrEMBL
	Q8K166_MOUSE	UniProtKB/TrEMBL
	Q9QZY0_MOUSE	UniProtKB/TrEMBL
	RP1_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q548Q8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-06-13	Rp1	retinitis pigmentosa 1 (human)	Gm38717	predicted gene, 38717	Data merged from RGD:10026113	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Mammalian Phenotype

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