NDUFA11 (NADH:ubiquinone oxidoreductase subunit A11) - Rat Genome Database

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Gene: NDUFA11 (NADH:ubiquinone oxidoreductase subunit A11) Sus scrofa
Analyze
Symbol: NDUFA11
Name: NADH:ubiquinone oxidoreductase subunit A11
RGD ID: 14061280
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH communication disorder (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,130,403 - 73,137,916 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,131,029 - 73,137,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,675,744 - 73,682,635 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
NDUFA11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,130,403 - 73,137,916 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,131,029 - 73,137,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,675,744 - 73,682,635 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,891,229 - 5,903,790 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,891,207 - 5,904,006 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,891,240 - 5,903,801 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,845,686 - 5,855,025 (-)NCBINCBI36Build 36hg18NCBI36
Build 34195,845,685 - 5,855,025NCBI
Celera195,830,248 - 5,842,986 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,650,763 - 5,663,502 (-)NCBIHuRef
CHM1_1195,891,532 - 5,904,277 (-)NCBICHM1_1
T2T-CHM13v2.0195,878,657 - 5,891,220 (-)NCBIT2T-CHM13v2.0
Ndufa11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,024,762 - 57,031,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,024,767 - 57,029,141 (+)EnsemblGRCm39 Ensembl
GRCm381756,717,762 - 56,724,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,717,767 - 56,722,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,857,185 - 56,863,671 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,402,886 - 56,407,816 (+)NCBIMGSCv36mm8
Celera1761,061,897 - 61,068,383 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.47NCBI
Ndufa11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,637,614 - 1,641,673 (+)NCBIGRCr8
mRatBN7.291,550,487 - 1,554,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,550,468 - 1,555,601 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,984,630 - 1,988,692 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,333,716 - 7,337,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,289,827 - 6,293,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,334,104 - 10,338,163 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,334,090 - 10,338,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,331,184 - 9,335,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,962,202 - 6,966,261 (-)NCBICelera
Cytogenetic Map9q11NCBI
Ndufa11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,557,016 - 3,564,999 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,557,016 - 3,564,999 (+)NCBIChiLan1.0ChiLan1.0
NDUFA11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,295,409 - 10,304,660 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,521,617 - 9,530,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,912,557 - 4,925,203 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,843,085 - 5,854,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,843,085 - 5,854,797 (-)Ensemblpanpan1.1panPan2
NDUFA11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,183,584 - 54,189,435 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,927,083 - 53,932,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,834,771 - 54,840,499 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,834,781 - 54,840,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,901,171 - 53,906,885 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,350,035 - 54,355,744 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,580,210 - 54,585,910 (+)NCBIUU_Cfam_GSD_1.0
Ndufa11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,444,923 - 214,451,109 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,383,509 - 3,390,087 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,383,674 - 3,389,862 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,517,871 - 5,529,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,517,797 - 5,529,455 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660812,507,925 - 2,515,866 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,319,665 - 4,328,273 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,319,657 - 4,328,273 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFA11
68 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000024184   ⟹   ENSSSCP00000023218
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl273,130,403 - 73,137,916 (+)Ensembl
RefSeq Acc Id: NM_001244924   ⟹   NP_001231853
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1273,131,029 - 73,137,921 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001231853   ⟸   NM_001244924
- UniProtKB: I3LGM4 (UniProtKB/TrEMBL),   A0A4X1VRM6 (UniProtKB/TrEMBL),   A0A8D1UWC0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000023218   ⟸   ENSSSCT00000024184


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027307 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032924 UniProtKB/TrEMBL
  ENSSSCG00015003709 UniProtKB/TrEMBL
  ENSSSCG00025074773 UniProtKB/TrEMBL
  ENSSSCG00030039039 UniProtKB/TrEMBL
  ENSSSCG00035039813 UniProtKB/TrEMBL
  ENSSSCG00040075300 UniProtKB/TrEMBL
  ENSSSCG00045029874 UniProtKB/TrEMBL
  ENSSSCG00050056788 UniProtKB/TrEMBL
  ENSSSCG00055003111 UniProtKB/TrEMBL
  ENSSSCG00060025969 UniProtKB/TrEMBL
  ENSSSCG00065069598 UniProtKB/TrEMBL
  ENSSSCG00070026090 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024184 ENTREZGENE
  ENSSSCT00000024184.3 UniProtKB/TrEMBL
  ENSSSCT00005052557.1 UniProtKB/TrEMBL
  ENSSSCT00015004846.1 UniProtKB/TrEMBL
  ENSSSCT00025103052.1 UniProtKB/TrEMBL
  ENSSSCT00030054367.1 UniProtKB/TrEMBL
  ENSSSCT00035052878.1 UniProtKB/TrEMBL
  ENSSSCT00040104403.1 UniProtKB/TrEMBL
  ENSSSCT00045050920.1 UniProtKB/TrEMBL
  ENSSSCT00050077413.1 UniProtKB/TrEMBL
  ENSSSCT00055006010.1 UniProtKB/TrEMBL
  ENSSSCT00060035179.1 UniProtKB/TrEMBL
  ENSSSCT00065095564.1 UniProtKB/TrEMBL
  ENSSSCT00070052242.1 UniProtKB/TrEMBL
InterPro NDUFA11 UniProtKB/TrEMBL
KEGG Report ssc:100514033 UniProtKB/TrEMBL
NCBI Gene NDUFA11 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 11 UniProtKB/TrEMBL
  PTHR21382 UniProtKB/TrEMBL
Pfam Tim17 UniProtKB/TrEMBL
UniProt A0A4X1VRM6 ENTREZGENE
  A0A8D1UWC0 ENTREZGENE, UniProtKB/TrEMBL
  I3LGM4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VRM6 UniProtKB/TrEMBL
VGNC ID VGNC:100310 ENTREZGENE