SLC9B1 (solute carrier family 9 member B1) - Rat Genome Database

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Gene: SLC9B1 (solute carrier family 9 member B1) Sus scrofa
Analyze
Symbol: SLC9B1
Name: solute carrier family 9 member B1
RGD ID: 14049847
Description: ENCODES a protein that exhibits antiporter activity (inferred); INVOLVED IN flagellated sperm motility (ortholog); regulation of intracellular pH (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); beta-mannosidosis (ortholog); genetic disease (ortholog); FOUND IN sperm principal piece (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium/hydrogen exchanger 9B1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8118,052,500 - 118,155,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18118,052,091 - 118,134,685 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28127,025,802 - 127,109,925 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC9B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8118,052,500 - 118,155,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18118,052,091 - 118,134,685 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28127,025,802 - 127,109,925 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC9B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384102,885,049 - 103,019,705 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4102,885,048 - 103,019,719 (-)EnsemblGRCh38hg38GRCh38
GRCh374103,806,206 - 103,940,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364104,025,643 - 104,160,325 (-)NCBINCBI36Build 36hg18NCBI36
Celera4101,105,822 - 101,237,997 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef499,542,386 - 99,674,649 (-)NCBIHuRef
CHM1_14103,782,676 - 103,917,369 (-)NCBICHM1_1
T2T-CHM13v2.04106,199,371 - 106,331,591 (-)NCBIT2T-CHM13v2.0
Slc9b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393135,053,754 - 135,103,588 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3135,053,790 - 135,103,588 (+)EnsemblGRCm39 Ensembl
GRCm383135,347,993 - 135,397,827 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3135,348,029 - 135,397,827 (+)EnsemblGRCm38mm10GRCm38
MGSCv373135,011,001 - 135,060,791 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363135,285,445 - 135,330,469 (+)NCBIMGSCv36mm8
Celera3141,762,353 - 141,812,176 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map362.55NCBI
Slc9b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82226,442,892 - 226,502,966 (+)NCBIGRCr8
mRatBN7.22223,769,105 - 223,818,359 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2223,769,105 - 223,818,179 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2231,494,639 - 231,543,764 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02229,394,375 - 229,443,501 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02224,259,152 - 224,308,281 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02240,527,120 - 240,581,616 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2240,527,130 - 240,576,179 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02259,048,088 - 259,097,137 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42232,849,203 - 232,891,958 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12232,785,756 - 232,878,518 (+)NCBI
Celera2215,981,853 - 216,030,452 (+)NCBICelera
Cytogenetic Map2q43NCBI
Slc9b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554965,601,578 - 5,641,594 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554965,586,836 - 5,637,550 (+)NCBIChiLan1.0ChiLan1.0
SLC9B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23100,957,869 - 101,101,525 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14101,239,766 - 101,388,083 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0495,324,597 - 95,475,599 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14105,987,123 - 106,100,119 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4105,971,131 - 106,071,773 (-)Ensemblpanpan1.1panPan2
SLC9B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13224,292,961 - 24,352,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3224,272,035 - 24,352,715 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3217,671,009 - 17,730,793 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03224,512,870 - 24,572,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3224,491,739 - 24,572,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13224,530,079 - 24,589,801 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03224,273,332 - 24,332,907 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03215,529,630 - 15,589,435 (+)NCBIUU_Cfam_GSD_1.0
Slc9b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530117,028,688 - 17,123,018 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936520411,811 - 466,280 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936520405,239 - 466,280 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1751,011,569 - 51,125,675 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603729,521,693 - 29,637,229 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in SLC9B1
2485 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 13 12 23 2 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000010034   ⟹   ENSSSCP00000009771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8118,052,500 - 118,128,281 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000077510   ⟹   ENSSSCP00000071823
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8118,052,500 - 118,155,396 (+)Ensembl
RefSeq Acc Id: XM_013989374   ⟹   XP_013844828
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18118,052,091 - 118,128,981 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100732   ⟹   XP_020956391
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18118,079,078 - 118,134,685 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013844828 (Get FASTA)   NCBI Sequence Viewer  
  XP_020956391 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000009771
  ENSSSCP00000009771.4
  ENSSSCP00000071823
  ENSSSCP00000071823.1
  ENSSSCP00070029688.1
RefSeq Acc Id: XP_013844828   ⟸   XM_013989374
- Peptide Label: isoform X1
- UniProtKB: F1S110 (UniProtKB/TrEMBL),   A0A4X1UM19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956391   ⟸   XM_021100732
- Peptide Label: isoform X2
- UniProtKB: A0A5G2R3P1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000009771   ⟸   ENSSSCT00000010034
Ensembl Acc Id: ENSSSCP00000071823   ⟸   ENSSSCT00000077510
Protein Domains
Cation/H+ exchanger transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009162 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070017994 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010034 ENTREZGENE
  ENSSSCT00000010034.4 UniProtKB/TrEMBL
  ENSSSCT00000077510 ENTREZGENE
  ENSSSCT00000077510.2 UniProtKB/TrEMBL
  ENSSSCT00070035526.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1530.20 UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/TrEMBL
  CPA1_transporter UniProtKB/TrEMBL
  Na+/solute_symporter_sf UniProtKB/TrEMBL
NCBI Gene SLC9B1 ENTREZGENE
PANTHER PTHR31102 UniProtKB/TrEMBL
  PTHR31102:SF5 UniProtKB/TrEMBL
Pfam Na_H_Exchanger UniProtKB/TrEMBL
UniProt A0A4X1UM19 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R3P1 ENTREZGENE, UniProtKB/TrEMBL
  F1S110 ENTREZGENE, UniProtKB/TrEMBL