SLC9B1 (solute carrier family 9 member B1) - Rat Genome Database

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Gene: SLC9B1 (solute carrier family 9 member B1) Pan paniscus
Analyze
Symbol: SLC9B1
Name: solute carrier family 9 member B1
RGD ID: 11712867
Description: ENCODES a protein that exhibits antiporter activity (inferred); INVOLVED IN flagellated sperm motility (ortholog); regulation of intracellular pH (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); beta-mannosidosis (ortholog); genetic disease (ortholog); FOUND IN sperm principal piece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium/hydrogen exchanger 9B1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23100,957,869 - 101,101,525 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14101,239,766 - 101,388,083 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0495,324,597 - 95,475,599 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14105,987,123 - 106,100,119 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4105,971,131 - 106,071,773 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC9B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23100,957,869 - 101,101,525 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14101,239,766 - 101,388,083 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0495,324,597 - 95,475,599 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14105,987,123 - 106,100,119 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4105,971,131 - 106,071,773 (-)Ensemblpanpan1.1panPan2
SLC9B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384102,885,049 - 103,019,705 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4102,885,048 - 103,019,719 (-)EnsemblGRCh38hg38GRCh38
GRCh374103,806,206 - 103,940,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364104,025,643 - 104,160,325 (-)NCBINCBI36Build 36hg18NCBI36
Celera4101,105,822 - 101,237,997 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef499,542,386 - 99,674,649 (-)NCBIHuRef
CHM1_14103,782,676 - 103,917,369 (-)NCBICHM1_1
T2T-CHM13v2.04106,199,371 - 106,331,591 (-)NCBIT2T-CHM13v2.0
Slc9b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393135,053,754 - 135,103,588 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3135,053,790 - 135,103,588 (+)EnsemblGRCm39 Ensembl
GRCm383135,347,993 - 135,397,827 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3135,348,029 - 135,397,827 (+)EnsemblGRCm38mm10GRCm38
MGSCv373135,011,001 - 135,060,791 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363135,285,445 - 135,330,469 (+)NCBIMGSCv36mm8
Celera3141,762,353 - 141,812,176 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map362.55NCBI
Slc9b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82226,442,892 - 226,502,966 (+)NCBIGRCr8
mRatBN7.22223,769,105 - 223,818,359 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2223,769,105 - 223,818,179 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2231,494,639 - 231,543,764 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02229,394,375 - 229,443,501 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02224,259,152 - 224,308,281 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02240,527,120 - 240,581,616 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2240,527,130 - 240,576,179 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02259,048,088 - 259,097,137 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42232,849,203 - 232,891,958 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12232,785,756 - 232,878,518 (+)NCBI
Celera2215,981,853 - 216,030,452 (+)NCBICelera
Cytogenetic Map2q43NCBI
Slc9b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554965,601,578 - 5,641,594 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554965,586,836 - 5,637,550 (+)NCBIChiLan1.0ChiLan1.0
SLC9B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13224,292,961 - 24,352,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3224,272,035 - 24,352,715 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3217,671,009 - 17,730,793 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03224,512,870 - 24,572,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3224,491,739 - 24,572,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13224,530,079 - 24,589,801 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03224,273,332 - 24,332,907 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03215,529,630 - 15,589,435 (+)NCBIUU_Cfam_GSD_1.0
Slc9b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530117,028,688 - 17,123,018 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936520411,811 - 466,280 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936520405,239 - 466,280 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8118,052,500 - 118,155,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18118,052,091 - 118,134,685 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28127,025,802 - 127,109,925 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC9B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1751,011,569 - 51,125,675 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603729,521,693 - 29,637,229 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000035258   ⟹   ENSPPAP00000012592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4105,971,131 - 106,071,773 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035265   ⟹   ENSPPAP00000012599
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4105,987,138 - 106,071,773 (-)Ensembl
RefSeq Acc Id: XM_034958952   ⟹   XP_034814843
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23100,974,955 - 101,101,525 (-)NCBI
NHGRI_mPanPan14101,270,978 - 101,388,083 (-)NCBI
Mhudiblu_PPA_v0495,324,597 - 95,475,599 (-)NCBI
RefSeq Acc Id: XM_034958953   ⟹   XP_034814844
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23100,974,955 - 101,101,515 (-)NCBI
NHGRI_mPanPan14101,271,365 - 101,388,083 (-)NCBI
Mhudiblu_PPA_v0495,324,614 - 95,475,589 (-)NCBI
RefSeq Acc Id: XM_055111670   ⟹   XP_054967645
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23100,957,869 - 101,101,525 (-)NCBI
NHGRI_mPanPan14101,239,766 - 101,388,083 (-)NCBI
RefSeq Acc Id: XM_055111671   ⟹   XP_054967646
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23100,974,955 - 101,101,515 (-)NCBI
NHGRI_mPanPan14101,270,983 - 101,388,083 (-)NCBI
RefSeq Acc Id: XM_055111672   ⟹   XP_054967647
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23100,973,034 - 101,101,525 (-)NCBI
NHGRI_mPanPan14101,259,464 - 101,388,083 (-)NCBI
RefSeq Acc Id: XP_034814843   ⟸   XM_034958952
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A5M3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034814844   ⟸   XM_034958953
- Peptide Label: isoform X5
Ensembl Acc Id: ENSPPAP00000012599   ⟸   ENSPPAT00000035265
Ensembl Acc Id: ENSPPAP00000012592   ⟸   ENSPPAT00000035258
RefSeq Acc Id: XP_054967645   ⟸   XM_055111670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054967647   ⟸   XM_055111672
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054967646   ⟸   XM_055111671
- Peptide Label: isoform X3
Protein Domains
Cation/H+ exchanger


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029472 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035258.1 UniProtKB/TrEMBL
  ENSPPAT00000035265.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1530.20 UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/TrEMBL
  CPA1_transporter UniProtKB/TrEMBL
  Na+/solute_symporter_sf UniProtKB/TrEMBL
NCBI Gene SLC9B1 ENTREZGENE
PANTHER PTHR31102 UniProtKB/TrEMBL
  PTHR31102:SF5 UniProtKB/TrEMBL
Pfam Na_H_Exchanger UniProtKB/TrEMBL
UniProt A0A2R9A5M3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AAY1_PANPA UniProtKB/TrEMBL