EFEMP1 (EGF containing fibulin extracellular matrix protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: EFEMP1 (EGF containing fibulin extracellular matrix protein 1) Sus scrofa
Analyze
Symbol: EFEMP1
Name: EGF containing fibulin extracellular matrix protein 1
RGD ID: 14046030
Description: ENCODES a protein that exhibits calcium ion binding (inferred); epidermal growth factor receptor activity (inferred); epidermal growth factor receptor binding (inferred); INVOLVED IN negative regulation of neuron projection development (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adenoma (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN basement membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EGF containing fibulin like extracellular matrix protein 1; EGF-containing fibulin-like extracellular matrix protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,407,677 - 85,473,252 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,407,677 - 85,473,251 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,132,118 - 90,197,711 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16504160   PMID:17407547   PMID:22301074  


Genomics

Comparative Map Data
EFEMP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,407,677 - 85,473,252 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,407,677 - 85,473,251 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,132,118 - 90,197,711 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EFEMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,865,967 - 55,923,782 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,865,967 - 55,924,139 (-)EnsemblGRCh38hg38GRCh38
GRCh37256,093,102 - 56,150,917 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,946,606 - 56,004,436 (-)NCBINCBI36Build 36hg18NCBI36
Build 34256,004,748 - 56,060,856NCBI
Celera255,933,455 - 55,991,286 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,828,195 - 55,886,081 (-)NCBIHuRef
CHM1_1256,023,033 - 56,081,234 (-)NCBICHM1_1
T2T-CHM13v2.0255,862,877 - 55,920,674 (-)NCBIT2T-CHM13v2.0
Efemp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,803,154 - 28,876,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,803,204 - 28,876,743 (+)EnsemblGRCm39 Ensembl
GRCm381128,853,154 - 28,926,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,853,204 - 28,926,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371128,753,205 - 28,826,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361128,767,773 - 28,826,737 (+)NCBIMGSCv36mm8
Celera1131,227,166 - 31,304,265 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.32NCBI
Efemp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814106,811,769 - 106,890,961 (+)NCBIGRCr8
mRatBN7.214102,610,813 - 102,690,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14102,610,908 - 102,690,018 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14106,946,350 - 107,025,480 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,182,972 - 108,262,217 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014104,655,396 - 104,734,632 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014113,202,382 - 113,294,993 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,202,419 - 113,295,014 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014112,892,387 - 112,902,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.014112,961,348 - 112,984,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414109,733,625 - 109,828,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114109,759,971 - 109,854,973 (+)NCBI
Celera14101,510,577 - 101,587,921 (+)NCBICelera
Cytogenetic Map14q22NCBI
Efemp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,181,099 - 27,240,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,181,717 - 27,240,067 (+)NCBIChiLan1.0ChiLan1.0
EFEMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21270,407,006 - 70,464,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A70,410,928 - 70,468,816 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A56,017,678 - 56,076,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A57,155,000 - 57,212,500 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A57,155,000 - 57,212,500 (-)Ensemblpanpan1.1panPan2
EFEMP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,632,801 - 56,694,872 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,579,899 - 56,787,187 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,589,822 - 56,651,875 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,637,641 - 57,699,724 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,637,642 - 57,699,051 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11057,338,037 - 57,400,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,617,689 - 57,679,576 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,909,175 - 57,970,591 (-)NCBIUU_Cfam_GSD_1.0
Efemp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,356,792 - 26,411,638 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364912,159,096 - 2,214,677 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364912,159,654 - 2,214,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFEMP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11450,989,553 - 51,048,149 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1450,989,795 - 51,048,708 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604560,671,542 - 60,729,463 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efemp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248335,654,016 - 5,723,519 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248335,654,805 - 5,722,185 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EFEMP1
863 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000009194   ⟹   ENSSSCP00000008961
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,407,709 - 85,473,254 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000039493   ⟹   ENSSSCP00000031597
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,407,709 - 85,472,268 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000061870   ⟹   ENSSSCP00000045813
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,408,494 - 85,473,252 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000080017   ⟹   ENSSSCP00000071270
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,407,677 - 85,473,249 (+)Ensembl
RefSeq Acc Id: NM_001244261   ⟹   NP_001231190
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1385,407,677 - 85,473,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996146   ⟹   XP_013851600
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1385,407,681 - 85,472,280 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001231190 (Get FASTA)   NCBI Sequence Viewer  
  XP_013851600 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AEI00725 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000031597
  ENSSSCP00000031597.1
  ENSSSCP00000045813.3
  ENSSSCP00000071270
  ENSSSCP00000071270.2
  ENSSSCP00005043345.1
  ENSSSCP00005043350.1
  ENSSSCP00005043378.1
  ENSSSCP00005043380.1
  ENSSSCP00005043388.1
  ENSSSCP00015027787.1
  ENSSSCP00015027966.1
  ENSSSCP00015028057.1
  ENSSSCP00015028161.1
  ENSSSCP00025041954.1
  ENSSSCP00025042016.1
  ENSSSCP00025042095.1
  ENSSSCP00025042160.1
  ENSSSCP00030048425.1
  ENSSSCP00030048432.1
  ENSSSCP00030048435.1
  ENSSSCP00030048437.1
  ENSSSCP00030048442.1
  ENSSSCP00030048445.1
  ENSSSCP00035046682.1
  ENSSSCP00035046708.1
  ENSSSCP00035046726.1
  ENSSSCP00035046815.1
  ENSSSCP00035046846.1
  ENSSSCP00040034351.1
  ENSSSCP00040034437.1
  ENSSSCP00040034486.1
  ENSSSCP00040034645.1
  ENSSSCP00045021063.1
  ENSSSCP00045021140.1
  ENSSSCP00045021251.1
  ENSSSCP00045021333.1
  ENSSSCP00050019416.1
  ENSSSCP00050019432.1
  ENSSSCP00050019440.1
  ENSSSCP00050019450.1
  ENSSSCP00055038808.1
  ENSSSCP00055038875.1
  ENSSSCP00055038977.1
  ENSSSCP00055039032.1
  ENSSSCP00060012647.1
  ENSSSCP00060012661.1
  ENSSSCP00060012671.1
  ENSSSCP00060012693.1
  ENSSSCP00065003129.1
  ENSSSCP00065003132.1
  ENSSSCP00065003133.1
  ENSSSCP00070051960.1
  ENSSSCP00070051963.1
  ENSSSCP00070051964.1
  ENSSSCP00070051968.1
RefSeq Acc Id: NP_001231190   ⟸   NM_001244261
- Peptide Label: precursor
- UniProtKB: F8SIP2 (UniProtKB/TrEMBL),   A0A480STR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851600   ⟸   XM_013996146
- Peptide Label: isoform X1
- UniProtKB: A0A286ZJ45 (UniProtKB/TrEMBL),   A0A8D1HWV6 (UniProtKB/TrEMBL),   A0A4X1WC16 (UniProtKB/TrEMBL),   A0A8D0M1A8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000031597   ⟸   ENSSSCT00000039493
Ensembl Acc Id: ENSSSCP00000008961   ⟸   ENSSSCT00000009194
Ensembl Acc Id: ENSSSCP00000071270   ⟸   ENSSSCT00000080017
Ensembl Acc Id: ENSSSCP00000045813   ⟸   ENSSSCT00000061870
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008397 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043423 UniProtKB/TrEMBL
  ENSSSCG00015052055 UniProtKB/TrEMBL
  ENSSSCG00025069518 UniProtKB/TrEMBL
  ENSSSCG00030074408 UniProtKB/TrEMBL
  ENSSSCG00035078997 UniProtKB/TrEMBL
  ENSSSCG00040058564 UniProtKB/TrEMBL
  ENSSSCG00045017852 UniProtKB/TrEMBL
  ENSSSCG00050034844 UniProtKB/TrEMBL
  ENSSSCG00055024660 UniProtKB/TrEMBL
  ENSSSCG00060021782 UniProtKB/TrEMBL
  ENSSSCG00065005398 UniProtKB/TrEMBL
  ENSSSCG00070030289 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039493 ENTREZGENE
  ENSSSCT00000039493.1 UniProtKB/TrEMBL
  ENSSSCT00000061870.3 UniProtKB/TrEMBL
  ENSSSCT00000080017 ENTREZGENE
  ENSSSCT00000080017.2 UniProtKB/TrEMBL
  ENSSSCT00005069676.1 UniProtKB/TrEMBL
  ENSSSCT00005069681.1 UniProtKB/TrEMBL
  ENSSSCT00005069710.1 UniProtKB/TrEMBL
  ENSSSCT00005069714.1 UniProtKB/TrEMBL
  ENSSSCT00005069723.1 UniProtKB/TrEMBL
  ENSSSCT00015069415.1 UniProtKB/TrEMBL
  ENSSSCT00015069964.1 UniProtKB/TrEMBL
  ENSSSCT00015070182.1 UniProtKB/TrEMBL
  ENSSSCT00015070388.1 UniProtKB/TrEMBL
  ENSSSCT00025095570.1 UniProtKB/TrEMBL
  ENSSSCT00025095721.1 UniProtKB/TrEMBL
  ENSSSCT00025095881.1 UniProtKB/TrEMBL
  ENSSSCT00025096007.1 UniProtKB/TrEMBL
  ENSSSCT00030104437.1 UniProtKB/TrEMBL
  ENSSSCT00030104448.1 UniProtKB/TrEMBL
  ENSSSCT00030104453.1 UniProtKB/TrEMBL
  ENSSSCT00030104456.1 UniProtKB/TrEMBL
  ENSSSCT00030104463.1 UniProtKB/TrEMBL
  ENSSSCT00030104466.1 UniProtKB/TrEMBL
  ENSSSCT00035107890.1 UniProtKB/TrEMBL
  ENSSSCT00035107958.1 UniProtKB/TrEMBL
  ENSSSCT00035107987.1 UniProtKB/TrEMBL
  ENSSSCT00035108126.1 UniProtKB/TrEMBL
  ENSSSCT00035108185.1 UniProtKB/TrEMBL
  ENSSSCT00040079537.1 UniProtKB/TrEMBL
  ENSSSCT00040079733.1 UniProtKB/TrEMBL
  ENSSSCT00040079808.1 UniProtKB/TrEMBL
  ENSSSCT00040080079.1 UniProtKB/TrEMBL
  ENSSSCT00045030401.1 UniProtKB/TrEMBL
  ENSSSCT00045030509.1 UniProtKB/TrEMBL
  ENSSSCT00045030658.1 UniProtKB/TrEMBL
  ENSSSCT00045030763.1 UniProtKB/TrEMBL
  ENSSSCT00050046847.1 UniProtKB/TrEMBL
  ENSSSCT00050046869.1 UniProtKB/TrEMBL
  ENSSSCT00050046877.1 UniProtKB/TrEMBL
  ENSSSCT00050046892.1 UniProtKB/TrEMBL
  ENSSSCT00055048625.1 UniProtKB/TrEMBL
  ENSSSCT00055048710.1 UniProtKB/TrEMBL
  ENSSSCT00055048830.1 UniProtKB/TrEMBL
  ENSSSCT00055048892.1 UniProtKB/TrEMBL
  ENSSSCT00060029517.1 UniProtKB/TrEMBL
  ENSSSCT00060029540.1 UniProtKB/TrEMBL
  ENSSSCT00060029560.1 UniProtKB/TrEMBL
  ENSSSCT00060029591.1 UniProtKB/TrEMBL
  ENSSSCT00065007296.1 UniProtKB/TrEMBL
  ENSSSCT00065007305.1 UniProtKB/TrEMBL
  ENSSSCT00065007308.1 UniProtKB/TrEMBL
  ENSSSCT00070060959.1 UniProtKB/TrEMBL
  ENSSSCT00070060962.1 UniProtKB/TrEMBL
  ENSSSCT00070060963.1 UniProtKB/TrEMBL
  ENSSSCT00070060967.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro cEGF UniProtKB/TrEMBL
  ECM_structural_protein UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Nephronectin_domain UniProtKB/TrEMBL
  NOTCH1_EGF-like UniProtKB/TrEMBL
KEGG Report ssc:100512046 UniProtKB/TrEMBL
NCBI Gene EFEMP1 ENTREZGENE
PANTHER EGF-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PA14 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR24034:SF102 UniProtKB/TrEMBL
  PTHR24050:SF20 UniProtKB/TrEMBL
Pfam cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Fibulin_C UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A286ZJ45 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AP71_PIG UniProtKB/TrEMBL
  A0A480STR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WBU1_PIG UniProtKB/TrEMBL
  A0A4X1WC13_PIG UniProtKB/TrEMBL
  A0A4X1WC16 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WD74_PIG UniProtKB/TrEMBL
  A0A5G2RAV3_PIG UniProtKB/TrEMBL
  A0A8D0M1A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YEY4_PIG UniProtKB/TrEMBL
  A0A8D1BIF4_PIG UniProtKB/TrEMBL
  A0A8D1D621_PIG UniProtKB/TrEMBL
  A0A8D1HN96_PIG UniProtKB/TrEMBL
  A0A8D1HNP3_PIG UniProtKB/TrEMBL
  A0A8D1HWV6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KGR2_PIG UniProtKB/TrEMBL
  A0A8D1KXT8_PIG UniProtKB/TrEMBL
  A0A8D1UQ57_PIG UniProtKB/TrEMBL
  F8SIP2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:102566 ENTREZGENE