EFEMP1 (EGF containing fibulin extracellular matrix protein 1) - Rat Genome Database

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Gene: EFEMP1 (EGF containing fibulin extracellular matrix protein 1) Sus scrofa
Analyze
Symbol: EFEMP1
Name: EGF containing fibulin extracellular matrix protein 1
RGD ID: 14046030
Description: ENCODES a protein that exhibits calcium ion binding (inferred); epidermal growth factor receptor activity (inferred); epidermal growth factor receptor binding (inferred); INVOLVED IN negative regulation of neuron projection development (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adenoma (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN basement membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EGF containing fibulin like extracellular matrix protein 1; EGF-containing fibulin-like extracellular matrix protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,407,677 - 85,473,252 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,407,677 - 85,473,251 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,132,118 - 90,197,711 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EFEMP1Pigadenoma  ISORGD:13183519068941protein:decreased expression: :RGDPMID:24080855|REF_RGD_ID:10401654
EFEMP1Pigenterocele  ISORGD:13183529068941 RGDPMID:17872905|REF_RGD_ID:10401789
EFEMP1Pighepatocellular carcinoma disease_progressionISORGD:13183519068941protein:decreased expression:liver:RGDPMID:23936443|REF_RGD_ID:10401793
EFEMP1Pighigh grade glioma  ISORGD:13183519068941protein:increased expression:brain:RGDPMID:19887559|REF_RGD_ID:10401656
EFEMP1PigKnee Osteoarthritis  ISORGD:13183519068941protein:increased expression:serum:RGDPMID:22275171|REF_RGD_ID:10401792
EFEMP1Pigmacular degeneration  ISORGD:13183519068941protein:altered expression: :RGDPMID:12242346|REF_RGD_ID:10401794
EFEMP1Pigmacular degeneration  ISORGD:13183529068941 RGDPMID:17666404|REF_RGD_ID:10401788
EFEMP1Pigmacular degeneration no_associationISORGD:13183529068941 RGDPMID:17872905|REF_RGD_ID:10401789
EFEMP1PigPremature Aging  ISORGD:13183529068941 RGDPMID:17872905|REF_RGD_ID:10401789
1 to 9 of 9 rows
1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EFEMP1Pigbladder diverticulum  ISORGD:13183518554872ClinVar Annotator: match by term: Diverticulum of bladderClinVarPMID:25741868|PMID:31792352
EFEMP1Pigblindness  ISORGD:13183518554872ClinVar Annotator: match by term: BlindnessClinVarPMID:25741868
EFEMP1Pigconnective tissue disease  ISORGD:13183518554872ClinVar Annotator: match by term: Connective tissue disorderClinVarPMID:22031286|PMID:25741868|PMID:31792352|PMID:33807164|PMID:34923728
EFEMP1Pigcutis laxa  ISORGD:13183518554872ClinVar Annotator: match by term: Cutis laxaClinVarPMID:25741868|PMID:33807164
EFEMP1PigCUTIS LAXA, AUTOSOMAL RECESSIVE, TYPE 1D  ISORGD:13183518554872ClinVar Annotator: match by term: Cutis laxa, autosomal recessive, type 1dClinVarPMID:22489068|PMID:25741868|PMID:28492532|PMID:31792352|PMID:32006683|PMID:33807164|PMID:35998264
EFEMP1PigDoyne honeycomb retinal dystrophy  ISORGD:13183518554872ClinVar Annotator: match by term: Doyne honeycomb degeneration of retina | ClinVar Annotator: match by more ...ClinVarPMID:10369267|PMID:11384588|PMID:11389162|PMID:12242346|PMID:15785976|PMID:17666404|PMID:18791549|PMID:22031286|PMID:22159686|PMID:25077532|PMID:25111685|PMID:25741868|PMID:26162006|PMID:26427406|PMID:27777122|PMID:28492532|PMID:30541486|PMID:33019987|PMID:33542268|PMID:33546218|PMID:33689237|PMID:33909993|PMID:34923728|PMID:36460718
EFEMP1Pigfundus dystrophy  ISORGD:13183518554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:10369267|PMID:11384588|PMID:11389162|PMID:12242346|PMID:15785976|PMID:17666404|PMID:18791549|PMID:22031286|PMID:22159686|PMID:25077532|PMID:25111685|PMID:25741868|PMID:26162006|PMID:26427406|PMID:27777122|PMID:28492532|PMID:30541486|PMID:33019987|PMID:33542268|PMID:33546218|PMID:33689237|PMID:33909993|PMID:34923728|PMID:36460718
EFEMP1Piggenetic disease  ISORGD:13183518554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868|PMID:28492532
EFEMP1PigGlaucoma 1, Open Angle, H  ISORGD:13183518554872ClinVar Annotator: match by term: Glaucoma 1, open angle, HClinVarPMID:25741868|PMID:26162006|PMID:28492532|PMID:34923728
EFEMP1Pigjuvenile glaucoma  ISORGD:13183518554872ClinVar Annotator: match by term: Glaucoma of childhoodClinVarPMID:28492532|PMID:34923728
EFEMP1PigMarfan Syndrome, Autosomal Recessive  ISORGD:13183518554872ClinVar Annotator: match by term: Recessive Marfanoid Syndrome with Severe HerniationClinVarPMID:22489068|PMID:28492532|PMID:32006683|PMID:35998264
EFEMP1Pigoptic atrophy  ISORGD:13183518554872ClinVar Annotator: match by term: Optic atrophyClinVarPMID:25741868|PMID:28492532
EFEMP1PigRadial Drusen, Autosomal Dominant  ISORGD:13183518554872ClinVar Annotator: match by term: DRUSEN, RADIAL, AUTOSOMAL DOMINANTClinVarPMID:28492532
1 to 13 of 13 rows
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EFEMP1Pigadenocarcinoma  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:17671114
EFEMP1PigAnimal Mammary Neoplasms  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:12376462
EFEMP1PigBreast Neoplasms  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:19115204
EFEMP1Pigcarcinoma  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:12376462
EFEMP1PigColorectal Neoplasms  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:17892325
EFEMP1PigExperimental Mammary Neoplasms  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:12376462
EFEMP1PigLung Neoplasms  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:17671114
EFEMP1Pigmalignant mesothelioma  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:27032653
EFEMP1Pigpancreatic cancer  ISORGD:13183519068941CTD Direct Evidence: marker/mechanismCTDPMID:19208748
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EFEMP1PigCUTIS LAXA, AUTOSOMAL RECESSIVE, TYPE 1D  ISORGD:13183517240710 OMIM 
EFEMP1PigDoyne honeycomb retinal dystrophy  ISORGD:13183517240710 OMIM 
EFEMP1PigGlaucoma 1, Open Angle, H  ISORGD:13183517240710 OMIM 


Biological Process
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Object Symbol
Species
Term
Qualifier
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With
Reference
Notes
Source
Original Reference(s)
EFEMP1Pigcamera-type eye development involved_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pigembryonic eye morphogenesis involved_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pigepidermal growth factor receptor signaling pathway involved_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pignegative regulation of chondrocyte differentiation involved_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pignegative regulation of neuron projection development  ISORGD:13085289068941 RGDPMID:18803302|REF_RGD_ID:10401659
EFEMP1Pigpeptidyl-tyrosine phosphorylation involved_inISORGD:13183519068941 PMID:19804359UniProtPMID:19804359
EFEMP1Pigpositive regulation of cell population proliferation  ISORGD:13085289068941 RGDPMID:18803302|REF_RGD_ID:10401659
EFEMP1Pigpositive regulation of cell projection organization  ISORGD:13085289068941 RGDPMID:18803302|REF_RGD_ID:10401659
EFEMP1Pigpost-embryonic eye morphogenesis involved_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pigregulation of DNA-templated transcription involved_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pigregulation of glial cell migration  ISORGD:13085289068941 RGDPMID:18803302|REF_RGD_ID:10401659
1 to 11 of 11 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EFEMP1Pigbasement membrane  ISORGD:13085289068941 RGDPMID:18803302|REF_RGD_ID:10401659
EFEMP1Pigextracellular matrix located_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pigextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
EFEMP1Pigextracellular space located_inIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107

Molecular Function
1 to 16 of 16 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EFEMP1Pigcalcium ion binding enablesIEAInterPro:IPR001881|InterPro:IPR018097150520179 InterProGO_REF:0000002
EFEMP1Pigepidermal growth factor receptor activity enablesIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pigepidermal growth factor receptor binding enablesIEAUniProtKB:Q12805|ensembl:ENSP00000347596150520179 EnsemblGO_REF:0000107
EFEMP1Pigprotein binding enablesISOUniProtKB:P542599068941 PMID:16713569IntActPMID:16713569
EFEMP1Pigprotein binding enablesISOUniProtKB:Q9WMX2-PRO_00000375519068941 PMID:18985028IntActPMID:18985028
EFEMP1Pigprotein binding enablesISOUniProtKB:A8MQ03|UniProtKB:O43765|UniProtKB:O95429|UniProtKB:P03973|UniProtKB:P24592|UniProtKB:P32242|UniProtKB:P49639|UniProtKB:Q12933|UniProtKB:Q13064|UniProtKB:Q16740|UniProtKB:Q3LHN2|UniProtKB:Q3LI59|UniProtKB:Q3LI64|UniProtKB:Q5T751|UniProtKB:Q5TA76|UniProtKB:Q5TA81|UniProtKB:Q6FHY5|UniProtKB:Q8IXL7-2|UniProtKB:Q92570|UniProtKB:Q9BQ89|UniProtKB:Q9BYE3|UniProtKB:Q9H2F3|UniProtKB:Q9NYG5-2|UniProtKB:Q9UHD9|UniProtKB:Q9UL159068941 PMID:32296183IntActPMID:32296183
EFEMP1Pigprotein binding enablesISOUniProtKB:O437659068941 PMID:16189514IntActPMID:16189514
EFEMP1Pigprotein binding enablesISOUniProtKB:O43765|UniProtKB:P46379|UniProtKB:Q12933|UniProtKB:Q86UY0|UniProtKB:Q9NPQ8-49068941 PMID:25416956IntActPMID:25416956
EFEMP1Pigprotein binding enablesISOUniProtKB:P496399068941 PMID:21653829IntActPMID:21653829
EFEMP1Pigprotein binding enablesISOUniProtKB:O43765|UniProtKB:Q12933|UniProtKB:Q6FHY59068941 PMID:26871637IntActPMID:26871637
EFEMP1Pigprotein binding enablesISOUniProtKB:O43765|UniProtKB:P50222|UniProtKB:P53673|UniProtKB:Q129339068941 PMID:25910212IntActPMID:25910212
EFEMP1Pigprotein binding enablesISOUniProtKB:O43765|UniProtKB:P463799068941 PMID:31515488IntActPMID:31515488
EFEMP1Pigprotein binding enablesISOUniProtKB:P428589068941 PMID:32814053IntActPMID:32814053
EFEMP1Pigprotein binding enablesISOUniProtKB:P103989068941 PMID:12620389IntActPMID:12620389
EFEMP1Pigprotein binding  ISORGD:6207459068941 RGDPMID:9268694|REF_RGD_ID:1598886
EFEMP1Pigprotein binding enablesISOUniProtKB:Q166109068941 PMID:19275936UniProtPMID:19275936
1 to 16 of 16 rows

PMID:16504160   PMID:17407547   PMID:22301074  



EFEMP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,407,677 - 85,473,252 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,407,677 - 85,473,251 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,132,118 - 90,197,711 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EFEMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,865,967 - 55,923,782 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,865,967 - 55,924,139 (-)EnsemblGRCh38hg38GRCh38
GRCh37256,093,102 - 56,150,917 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,946,606 - 56,004,436 (-)NCBINCBI36Build 36hg18NCBI36
Build 34256,004,748 - 56,060,856NCBI
Celera255,933,455 - 55,991,286 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,828,195 - 55,886,081 (-)NCBIHuRef
CHM1_1256,023,033 - 56,081,234 (-)NCBICHM1_1
T2T-CHM13v2.0255,862,877 - 55,920,674 (-)NCBIT2T-CHM13v2.0
Efemp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,803,154 - 28,876,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,803,204 - 28,876,743 (+)EnsemblGRCm39 Ensembl
GRCm381128,853,154 - 28,926,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,853,204 - 28,926,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371128,753,205 - 28,826,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361128,767,773 - 28,826,737 (+)NCBIMGSCv36mm8
Celera1131,227,166 - 31,304,265 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.32NCBI
Efemp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814106,811,769 - 106,890,961 (+)NCBIGRCr8
mRatBN7.214102,610,813 - 102,690,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14102,610,908 - 102,690,018 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14106,946,350 - 107,025,480 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,182,972 - 108,262,217 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014104,655,396 - 104,734,632 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014113,202,382 - 113,294,993 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,202,419 - 113,295,014 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014112,892,387 - 112,902,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.014112,961,348 - 112,984,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414109,733,625 - 109,828,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114109,759,971 - 109,854,973 (+)NCBI
Celera14101,510,577 - 101,587,921 (+)NCBICelera
Cytogenetic Map14q22NCBI
Efemp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,181,099 - 27,240,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,181,717 - 27,240,067 (+)NCBIChiLan1.0ChiLan1.0
EFEMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21270,407,006 - 70,464,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A70,410,928 - 70,468,816 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A56,017,678 - 56,076,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A57,155,000 - 57,212,500 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A57,155,000 - 57,212,500 (-)Ensemblpanpan1.1panPan2
EFEMP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,632,801 - 56,694,872 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,579,899 - 56,787,187 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,589,822 - 56,651,875 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,637,641 - 57,699,724 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,637,642 - 57,699,051 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11057,338,037 - 57,400,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,617,689 - 57,679,576 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,909,175 - 57,970,591 (-)NCBIUU_Cfam_GSD_1.0
Efemp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,356,792 - 26,411,638 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364912,159,096 - 2,214,677 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364912,159,654 - 2,214,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFEMP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11450,989,553 - 51,048,149 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1450,989,795 - 51,048,708 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604560,671,542 - 60,729,463 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efemp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248335,654,016 - 5,723,519 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248335,654,805 - 5,722,185 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in EFEMP1
885 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000009194   ⟹   ENSSSCP00000008961
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,407,709 - 85,473,254 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000039493   ⟹   ENSSSCP00000031597
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,407,709 - 85,472,268 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000061870   ⟹   ENSSSCP00000045813
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,408,494 - 85,473,252 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000080017   ⟹   ENSSSCP00000071270
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl385,407,677 - 85,473,249 (+)Ensembl
RefSeq Acc Id: NM_001244261   ⟹   NP_001231190
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1385,407,677 - 85,473,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996146   ⟹   XP_013851600
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1385,407,681 - 85,472,280 (+)NCBI
Sequence:
1 to 30 of 54 rows
Protein RefSeqs NP_001231190 (Get FASTA)   NCBI Sequence Viewer  
  XP_013851600 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AEI00725 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000031597
  ENSSSCP00000031597.1
  ENSSSCP00000045813.3
  ENSSSCP00000071270
  ENSSSCP00000071270.2
  ENSSSCP00015027787.1
  ENSSSCP00015027966.1
  ENSSSCP00015028057.1
  ENSSSCP00015028161.1
  ENSSSCP00025041954.1
  ENSSSCP00025042016.1
  ENSSSCP00025042095.1
  ENSSSCP00025042160.1
  ENSSSCP00030048425.1
  ENSSSCP00030048432.1
  ENSSSCP00030048435.1
  ENSSSCP00030048437.1
  ENSSSCP00030048442.1
  ENSSSCP00030048445.1
  ENSSSCP00035046682.1
  ENSSSCP00035046708.1
  ENSSSCP00035046726.1
  ENSSSCP00035046815.1
  ENSSSCP00035046846.1
  ENSSSCP00040034351.1
  ENSSSCP00040034437.1
  ENSSSCP00040034486.1
1 to 30 of 54 rows
RefSeq Acc Id: NP_001231190   ⟸   NM_001244261
- Peptide Label: precursor
- UniProtKB: F8SIP2 (UniProtKB/TrEMBL),   A0A480STR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851600   ⟸   XM_013996146
- Peptide Label: isoform X1
- UniProtKB: A0A286ZJ45 (UniProtKB/TrEMBL),   A0A8D1HWV6 (UniProtKB/TrEMBL),   A0A8D0M1A8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000031597   ⟸   ENSSSCT00000039493
Ensembl Acc Id: ENSSSCP00000008961   ⟸   ENSSSCT00000009194
Ensembl Acc Id: ENSSSCP00000071270   ⟸   ENSSSCT00000080017
EGF-like



1 to 40 of 108 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000008397 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015052055 UniProtKB/TrEMBL
  ENSSSCG00025069518 UniProtKB/TrEMBL
  ENSSSCG00030074408 UniProtKB/TrEMBL
  ENSSSCG00035078997 UniProtKB/TrEMBL
  ENSSSCG00040058564 UniProtKB/TrEMBL
  ENSSSCG00045017852 UniProtKB/TrEMBL
  ENSSSCG00050034844 UniProtKB/TrEMBL
  ENSSSCG00055024660 UniProtKB/TrEMBL
  ENSSSCG00060021782 UniProtKB/TrEMBL
  ENSSSCG00065005398 UniProtKB/TrEMBL
  ENSSSCG00070030289 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039493 ENTREZGENE
  ENSSSCT00000039493.1 UniProtKB/TrEMBL
  ENSSSCT00000061870.3 UniProtKB/TrEMBL
  ENSSSCT00000080017 ENTREZGENE
  ENSSSCT00000080017.2 UniProtKB/TrEMBL
  ENSSSCT00015069415.1 UniProtKB/TrEMBL
  ENSSSCT00015069964.1 UniProtKB/TrEMBL
  ENSSSCT00015070182.1 UniProtKB/TrEMBL
  ENSSSCT00015070388.1 UniProtKB/TrEMBL
  ENSSSCT00025095570.1 UniProtKB/TrEMBL
  ENSSSCT00025095721.1 UniProtKB/TrEMBL
  ENSSSCT00025095881.1 UniProtKB/TrEMBL
  ENSSSCT00025096007.1 UniProtKB/TrEMBL
  ENSSSCT00030104437.1 UniProtKB/TrEMBL
  ENSSSCT00030104448.1 UniProtKB/TrEMBL
  ENSSSCT00030104453.1 UniProtKB/TrEMBL
  ENSSSCT00030104456.1 UniProtKB/TrEMBL
  ENSSSCT00030104463.1 UniProtKB/TrEMBL
  ENSSSCT00030104466.1 UniProtKB/TrEMBL
  ENSSSCT00035107890.1 UniProtKB/TrEMBL
  ENSSSCT00035107958.1 UniProtKB/TrEMBL
  ENSSSCT00035107987.1 UniProtKB/TrEMBL
  ENSSSCT00035108126.1 UniProtKB/TrEMBL
  ENSSSCT00035108185.1 UniProtKB/TrEMBL
  ENSSSCT00040079537.1 UniProtKB/TrEMBL
  ENSSSCT00040079733.1 UniProtKB/TrEMBL
  ENSSSCT00040079808.1 UniProtKB/TrEMBL
  ENSSSCT00040080079.1 UniProtKB/TrEMBL
1 to 40 of 108 rows