PIGH (phosphatidylinositol glycan anchor biosynthesis class H) - Rat Genome Database

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Gene: PIGH (phosphatidylinositol glycan anchor biosynthesis class H) Sus scrofa
Analyze
Symbol: PIGH
Name: phosphatidylinositol glycan anchor biosynthesis class H
RGD ID: 14036459
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN GPI anchor biosynthetic process (inferred); ASSOCIATED WITH genetic disease (ortholog); Glycosylphosphatidylinositol Biosynthesis Defect 17 (ortholog); Leber congenital amaurosis 13 (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositol N-acetylglucosaminyltransferase subunit H
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,306,121 - 91,316,278 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,306,119 - 91,316,348 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,612,379 - 97,622,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PIGHPiggenetic disease  ISOPIGH (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
PIGHPigGlycosylphosphatidylinositol Biosynthesis Defect 17  ISOPIGH (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
PIGHPigLeber congenital amaurosis 13  ISOPIGH (Homo sapiens)8554872ClinVar Annotator: match by term: Leber congenital amaurosis 13ClinVarPMID:28492532
PIGHPigprostate cancer  ISOPIGH (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PIGHPigGlycosylphosphatidylinositol Biosynthesis Defect 17  ISOPIGH (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PIGHPigGPI anchor biosynthetic process involved_inIBAPANTHER:PTN000391179 more ...150520179 GO_CentralGO_REF:0000033
PIGHPigGPI anchor biosynthetic process involved_inIEAInterPro:IPR044215150520179 InterProGO_REF:0000002
PIGHPigGPI anchor biosynthetic process involved_inIEAUniPathway:UPA00196150520179 UniProtGO_REF:0000041
PIGHPigGPI anchor biosynthetic process involved_inIEAUniProtKB:Q14442 and ensembl:ENSP00000216452150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PIGHPigendoplasmic reticulum membrane located_inIEAUniProtKB:Q14442 and ensembl:ENSP00000216452150520179 EnsemblGO_REF:0000107
PIGHPigglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex part_ofIBAPANTHER:PTN000391179 and UniProtKB:Q14442150520179 GO_CentralGO_REF:0000033
PIGHPigglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex part_ofIEAUniProtKB:Q14442 and ensembl:ENSP00000216452150520179 EnsemblGO_REF:0000107
PIGHPigglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex part_ofIEAInterPro:IPR044215150520179 InterProGO_REF:0000002
PIGHPigmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

Molecular Function

  

PMID:30032202  



PIGH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,306,121 - 91,316,278 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,306,119 - 91,316,348 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,612,379 - 97,622,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIGH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381467,589,306 - 67,600,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1467,581,955 - 67,600,286 (-)EnsemblGRCh38hg38GRCh38
GRCh371468,056,023 - 68,067,018 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361467,125,776 - 67,136,770 (-)NCBINCBI36Build 36hg18NCBI36
Build 341467,125,783 - 67,136,731NCBI
Celera1448,115,088 - 48,126,092 (-)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1448,225,764 - 48,236,772 (-)NCBIHuRef
CHM1_11467,994,670 - 68,005,668 (-)NCBICHM1_1
T2T-CHM13v2.01461,796,426 - 61,807,421 (-)NCBIT2T-CHM13v2.0
Pigh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391279,127,443 - 79,136,478 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1279,127,438 - 79,136,425 (-)EnsemblGRCm39 Ensembl
GRCm381279,080,669 - 79,089,753 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1279,080,664 - 79,089,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371280,181,656 - 80,190,657 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361279,999,509 - 80,008,510 (-)NCBIMGSCv36mm8
Celera1280,545,145 - 80,554,146 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
Pigh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,601,369 - 103,630,214 (-)NCBIGRCr8
mRatBN7.2697,874,903 - 97,897,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,882,903 - 97,897,142 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,317,103 - 98,326,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,616,255 - 98,625,713 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0698,002,941 - 98,012,398 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,258,621 - 102,272,826 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,263,337 - 102,272,777 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06111,628,229 - 111,642,457 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,713,237 - 101,722,655 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16101,718,465 - 101,726,103 (-)NCBI
Celera696,274,098 - 96,283,539 (-)NCBICelera
Cytogenetic Map6q24NCBI
Pigh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,601,394 - 2,616,255 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554662,601,368 - 2,616,255 (+)NCBIChiLan1.0ChiLan1.0
PIGH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21568,690,464 - 68,708,665 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11467,906,976 - 67,925,166 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01448,160,062 - 48,178,253 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11467,038,092 - 67,056,371 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1467,045,451 - 67,056,371 (-)Ensemblpanpan1.1panPan2
PIGH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1841,557,773 - 41,565,309 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl841,557,771 - 41,565,279 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha841,249,937 - 41,258,378 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0841,785,457 - 41,793,898 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl841,786,188 - 41,793,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1841,404,233 - 41,412,663 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0841,477,859 - 41,486,301 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0841,837,330 - 41,845,767 (-)NCBIUU_Cfam_GSD_1.0
Pigh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864063,212,066 - 63,257,258 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649510,969,364 - 10,979,620 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649510,971,448 - 10,979,622 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12444,790,528 - 44,848,870 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2444,838,242 - 44,848,598 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605333,020,600 - 33,078,695 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473433,398,584 - 33,411,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473433,398,446 - 33,414,710 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in PIGH
292 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000045196   ⟹   ENSSSCP00000038528
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl791,306,121 - 91,316,278 (-)Ensembl
RefSeq Acc Id: XM_001928658   ⟹   XP_001928693
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,306,119 - 91,316,348 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656345   ⟹   XP_005656402
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,306,122 - 91,316,348 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656346   ⟹   XP_005656403
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,308,796 - 91,316,348 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001928693   ⟸   XM_001928658
- Peptide Label: isoform X2
- UniProtKB: A0A481AC83 (UniProtKB/TrEMBL),   A0A8D0P9T4 (UniProtKB/TrEMBL),   A0A8D1WE00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005656402   ⟸   XM_005656345
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U3F7 (UniProtKB/TrEMBL),   A0A287A3K3 (UniProtKB/TrEMBL),   A0A8D1FT22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005656403   ⟸   XM_005656346
- Peptide Label: isoform X3
- UniProtKB: A0A8D1WE00 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000038528   ⟸   ENSSSCT00000045196


1 to 40 of 41 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000039351 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015053558 UniProtKB/TrEMBL
  ENSSSCG00025009215 UniProtKB/TrEMBL
  ENSSSCG00030025319 UniProtKB/TrEMBL
  ENSSSCG00035017379 UniProtKB/TrEMBL
  ENSSSCG00040069823 UniProtKB/TrEMBL
  ENSSSCG00045034373 UniProtKB/TrEMBL
  ENSSSCG00050060041 UniProtKB/TrEMBL
  ENSSSCG00055012781 UniProtKB/TrEMBL
  ENSSSCG00060063045 UniProtKB/TrEMBL
  ENSSSCG00065027362 UniProtKB/TrEMBL
  ENSSSCG00070014816 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045196 ENTREZGENE
  ENSSSCT00000045196.3 UniProtKB/TrEMBL
  ENSSSCT00015071268.1 UniProtKB/TrEMBL
  ENSSSCT00025012199.1 UniProtKB/TrEMBL
  ENSSSCT00030035330.1 UniProtKB/TrEMBL
  ENSSSCT00030035339.1 UniProtKB/TrEMBL
  ENSSSCT00035022327.1 UniProtKB/TrEMBL
  ENSSSCT00040095673.1 UniProtKB/TrEMBL
  ENSSSCT00045058922.1 UniProtKB/TrEMBL
  ENSSSCT00050081802.1 UniProtKB/TrEMBL
  ENSSSCT00055025147.1 UniProtKB/TrEMBL
  ENSSSCT00060085994.1 UniProtKB/TrEMBL
  ENSSSCT00060086021.1 UniProtKB/TrEMBL
  ENSSSCT00065036847.1 UniProtKB/TrEMBL
  ENSSSCT00070029073.1 UniProtKB/TrEMBL
InterPro GPI-GlcNAc_Trfase_PIG-H_dom UniProtKB/TrEMBL
  PIG-H UniProtKB/TrEMBL
KEGG Report ssc:100151845 UniProtKB/TrEMBL
NCBI Gene PIGH ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H UniProtKB/TrEMBL
  PTHR15231 UniProtKB/TrEMBL
Pfam PIG-H UniProtKB/TrEMBL
UniProt A0A287A3K3 ENTREZGENE, UniProtKB/TrEMBL
  A0A481AC83 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U3F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0P9T4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FT22 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WE00 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 41 rows