TAF7 (TATA-box binding protein associated factor 7) - Rat Genome Database

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Gene: TAF7 (TATA-box binding protein associated factor 7) Sus scrofa
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Symbol: TAF7
Name: TATA-box binding protein associated factor 7
RGD ID: 14028079
Description: ENCODES a protein that exhibits H3K27me3 modified histone binding (ortholog); INVOLVED IN intracellular estrogen receptor signaling pathway (ortholog); regulation of transcription by RNA polymerase II (ortholog); transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog); transcription factor TFIID complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription initiation factor TFIID subunit 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,947,343 - 142,952,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,949,271 - 142,952,611 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,149,391 - 149,151,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TAF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,947,343 - 142,952,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,949,271 - 142,952,611 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,149,391 - 149,151,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,318,490 - 141,320,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,259,884 - 141,320,784 (-)EnsemblGRCh38hg38GRCh38
GRCh375140,698,057 - 140,700,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,678,241 - 140,680,535 (-)NCBINCBI36Build 36hg18NCBI36
Build 345140,678,241 - 140,680,535NCBI
Celera5136,774,883 - 136,777,177 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,843,117 - 135,845,411 (-)NCBIHuRef
CHM1_15140,131,262 - 140,133,556 (-)NCBICHM1_1
T2T-CHM13v2.05141,843,793 - 141,846,087 (-)NCBIT2T-CHM13v2.0
Taf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,773,544 - 37,777,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,773,544 - 37,777,257 (-)EnsemblGRCm39 Ensembl
GRCm381837,640,491 - 37,644,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,640,491 - 37,644,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371837,800,145 - 37,803,858 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,766,876 - 37,772,457 (-)NCBIMGSCv36mm8
Celera1838,972,979 - 38,976,692 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.54NCBI
Taf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81829,704,182 - 29,713,382 (-)NCBIGRCr8
mRatBN7.21829,459,937 - 29,462,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,452,943 - 29,462,134 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1829,564,287 - 29,566,435 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,326,296 - 30,328,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01829,661,623 - 29,663,771 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01830,779,149 - 30,781,297 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1830,779,150 - 30,781,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,475,376 - 30,477,524 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,541,432 - 30,543,580 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,568,523 - 30,569,630 (-)NCBI
Celera1829,106,903 - 29,109,051 (-)NCBICelera
Cytogenetic Map18p11NCBI
Taf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,453,655 - 12,456,070 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,453,655 - 12,456,070 (+)NCBIChiLan1.0ChiLan1.0
TAF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,568,526 - 136,570,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,708,078 - 134,710,551 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,680,554 - 136,682,862 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,794,156 - 142,796,442 (-)NCBIpanpan1.1PanPan1.1panPan2
TAF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,295,387 - 36,297,681 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,295,911 - 36,296,960 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,347,329 - 33,349,652 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,749,118 - 36,751,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,749,126 - 36,751,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,824,087 - 33,826,410 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,635,069 - 34,637,392 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,442,754 - 35,445,077 (-)NCBIUU_Cfam_GSD_1.0
Taf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213151,250,983 - 151,253,265 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,824,953 - 12,827,214 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,824,928 - 12,827,238 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,938,202 - 43,940,486 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,938,714 - 43,939,763 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,913,731 - 33,916,051 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774548,072 - 550,404 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774548,072 - 550,410 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAF7
121 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 4 3 5 2 23 2 3 3
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000029957   ⟹   ENSSSCP00000026015
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2142,947,343 - 142,952,505 (-)Ensembl
RefSeq Acc Id: XM_005661764   ⟹   XP_005661821
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12142,949,271 - 142,952,611 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005661821   ⟸   XM_005661764
- UniProtKB: F1RMU2 (UniProtKB/TrEMBL),   A0A4X1SLT6 (UniProtKB/TrEMBL),   A0A480Y076 (UniProtKB/TrEMBL),   A0A8D0PC37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026015   ⟸   ENSSSCT00000029957

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028168 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005009917 UniProtKB/TrEMBL
  ENSSSCG00015054923 UniProtKB/TrEMBL
  ENSSSCG00025035470 UniProtKB/TrEMBL
  ENSSSCG00030023964 UniProtKB/TrEMBL
  ENSSSCG00035034163 UniProtKB/TrEMBL
  ENSSSCG00040053262 UniProtKB/TrEMBL
  ENSSSCG00045010865 UniProtKB/TrEMBL
  ENSSSCG00050029312 UniProtKB/TrEMBL
  ENSSSCG00055001927 UniProtKB/TrEMBL
  ENSSSCG00060015184 UniProtKB/TrEMBL
  ENSSSCG00065060374 UniProtKB/TrEMBL
  ENSSSCG00070002241 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029957 ENTREZGENE
  ENSSSCT00000029957.4 UniProtKB/TrEMBL
  ENSSSCT00005015175.1 UniProtKB/TrEMBL
  ENSSSCT00015073122.1 UniProtKB/TrEMBL
  ENSSSCT00025048341.1 UniProtKB/TrEMBL
  ENSSSCT00030033319.1 UniProtKB/TrEMBL
  ENSSSCT00035045271.1 UniProtKB/TrEMBL
  ENSSSCT00040071953.1 UniProtKB/TrEMBL
  ENSSSCT00045018455.1 UniProtKB/TrEMBL
  ENSSSCT00050039390.1 UniProtKB/TrEMBL
  ENSSSCT00055003571.1 UniProtKB/TrEMBL
  ENSSSCT00060020194.1 UniProtKB/TrEMBL
  ENSSSCT00065082693.1 UniProtKB/TrEMBL
  ENSSSCT00070004156.1 UniProtKB/TrEMBL
InterPro TAF7 UniProtKB/TrEMBL
  TAFII55_prot_cons_reg UniProtKB/TrEMBL
KEGG Report ssc:100523236 UniProtKB/TrEMBL
NCBI Gene TAF7 ENTREZGENE
PANTHER PTHR12228 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 UniProtKB/TrEMBL
Pfam TAFII55_N UniProtKB/TrEMBL
SMART TAFII55_N UniProtKB/TrEMBL
UniProt A0A480Y076 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SLT6 ENTREZGENE
  A0A8D0PC37 ENTREZGENE, UniProtKB/TrEMBL
  F1RMU2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1SLT6 UniProtKB/TrEMBL
VGNC ID VGNC:93721 ENTREZGENE