TAF7 (TATA-box binding protein associated factor 7) - Rat Genome Database

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Gene: TAF7 (TATA-box binding protein associated factor 7) Homo sapiens
Analyze
Symbol: TAF7
Name: TATA-box binding protein associated factor 7
RGD ID: 1320545
HGNC Page HGNC:11541
Description: Enables several functions, including P-TEFb complex binding activity; TFIIH-class transcription factor complex binding activity; and nuclear receptor binding activity. Contributes to H3K27me3 modified histone binding activity and RNA polymerase II general transcription initiation factor activity. Involved in regulation of macromolecule biosynthetic process and transcription by RNA polymerase II. Located in nucleus. Part of MLL1 complex; transcription factor TFIID complex; and transcription factor TFTC complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: RNA polymerase II TBP-associated factor subunit F; TAF(II)55; TAF2F; TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa; TAFII-55; TAFII55; TATA box binding protein (TBP)-associated factor, RNA polymerase II, F, 55kD; TATA box binding protein associated factor 7; TBP-associated factor F; transcription factor IID subunit TAFII55; transcription initiation factor TFIID 55 kDa subunit; transcription initiation factor TFIID subunit 7; transcription initiation factor TFIID, 55 kDa subunit
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,318,490 - 141,320,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,259,884 - 141,320,784 (-)EnsemblGRCh38hg38GRCh38
GRCh375140,698,057 - 140,700,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,678,241 - 140,680,535 (-)NCBINCBI36Build 36hg18NCBI36
Build 345140,678,241 - 140,680,535NCBI
Celera5136,774,883 - 136,777,177 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,843,117 - 135,845,411 (-)NCBIHuRef
CHM1_15140,131,262 - 140,133,556 (-)NCBICHM1_1
T2T-CHM13v2.05141,843,793 - 141,846,087 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Structural bioinformatics of the general transcription factor TFIID. Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7824954   PMID:7835343   PMID:7836461   PMID:7933101   PMID:8012384   PMID:8121496   PMID:8680883   PMID:8702684   PMID:8764009   PMID:8764062   PMID:8794892   PMID:8849451  
PMID:9045704   PMID:9054383   PMID:9153318   PMID:9311784   PMID:9488465   PMID:9603525   PMID:9632676   PMID:10373431   PMID:10409738   PMID:10896937   PMID:11005381   PMID:11230163  
PMID:11340078   PMID:11406595   PMID:11438666   PMID:11564863   PMID:11592977   PMID:12477932   PMID:12665565   PMID:12676957   PMID:14580349   PMID:15053879   PMID:15078871   PMID:15099517  
PMID:15489334   PMID:15893730   PMID:15899866   PMID:15960975   PMID:16407123   PMID:16415881   PMID:17081983   PMID:17320040   PMID:17643375   PMID:17884155   PMID:18029348   PMID:18206972  
PMID:18391197   PMID:19240132   PMID:20211142   PMID:20850016   PMID:20937824   PMID:21729782   PMID:21873635   PMID:21900206   PMID:21988832   PMID:22323595   PMID:22424883   PMID:22711989  
PMID:22939629   PMID:23027873   PMID:23332750   PMID:24927529   PMID:25412659   PMID:25575120   PMID:26186194   PMID:26344197   PMID:26496610   PMID:27007846   PMID:27634302   PMID:28514442  
PMID:28893534   PMID:29111974   PMID:29203640   PMID:30028080   PMID:30194290   PMID:30554943   PMID:30804502   PMID:31162714   PMID:31753913   PMID:31871319   PMID:32076268   PMID:32416067  
PMID:32513696   PMID:32814053   PMID:32994395   PMID:33001583   PMID:33226137   PMID:33417871   PMID:33640491   PMID:33961781   PMID:34709727   PMID:34762273   PMID:35013218   PMID:35271311  
PMID:35439318   PMID:35545047   PMID:35831314   PMID:35944360   PMID:36215168   PMID:36232890   PMID:37232246   PMID:37689310   PMID:38280479  


Genomics

Comparative Map Data
TAF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,318,490 - 141,320,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,259,884 - 141,320,784 (-)EnsemblGRCh38hg38GRCh38
GRCh375140,698,057 - 140,700,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,678,241 - 140,680,535 (-)NCBINCBI36Build 36hg18NCBI36
Build 345140,678,241 - 140,680,535NCBI
Celera5136,774,883 - 136,777,177 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,843,117 - 135,845,411 (-)NCBIHuRef
CHM1_15140,131,262 - 140,133,556 (-)NCBICHM1_1
T2T-CHM13v2.05141,843,793 - 141,846,087 (-)NCBIT2T-CHM13v2.0
Taf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,773,544 - 37,777,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,773,544 - 37,777,257 (-)EnsemblGRCm39 Ensembl
GRCm381837,640,491 - 37,644,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,640,491 - 37,644,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371837,800,145 - 37,803,858 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,766,876 - 37,772,457 (-)NCBIMGSCv36mm8
Celera1838,972,979 - 38,976,692 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.54NCBI
Taf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81829,704,182 - 29,713,382 (-)NCBIGRCr8
mRatBN7.21829,459,937 - 29,462,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,452,943 - 29,462,134 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1829,564,287 - 29,566,435 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,326,296 - 30,328,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01829,661,623 - 29,663,771 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01830,779,149 - 30,781,297 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1830,779,150 - 30,781,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,475,376 - 30,477,524 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,541,432 - 30,543,580 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,568,523 - 30,569,630 (-)NCBI
Celera1829,106,903 - 29,109,051 (-)NCBICelera
Cytogenetic Map18p11NCBI
Taf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,453,655 - 12,456,070 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,453,655 - 12,456,070 (+)NCBIChiLan1.0ChiLan1.0
TAF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,568,526 - 136,570,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,708,078 - 134,710,551 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,680,554 - 136,682,862 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,794,156 - 142,796,442 (-)NCBIpanpan1.1PanPan1.1panPan2
TAF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,295,387 - 36,297,681 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,295,911 - 36,296,960 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,347,329 - 33,349,652 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,749,118 - 36,751,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,749,126 - 36,751,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,824,087 - 33,826,410 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,635,069 - 34,637,392 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,442,754 - 35,445,077 (-)NCBIUU_Cfam_GSD_1.0
Taf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213151,250,983 - 151,253,265 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,824,953 - 12,827,214 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,824,928 - 12,827,238 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,947,343 - 142,952,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,949,271 - 142,952,611 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,149,391 - 149,151,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,938,202 - 43,940,486 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,938,714 - 43,939,763 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,913,731 - 33,916,051 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774548,072 - 550,404 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774548,072 - 550,410 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAF7
11 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3 copy number gain See cases [RCV000051193] Chr5:130860928..155321811 [GRCh38]
Chr5:130196621..154701371 [GRCh37]
Chr5:130224520..154681564 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.2-32(chr5:138871137-145812309)x1 copy number loss See cases [RCV000052142] Chr5:138871137..145812309 [GRCh38]
Chr5:138206826..145191872 [GRCh37]
Chr5:138234725..145172065 [NCBI36]
Chr5:5q31.2-32
pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1 copy number loss See cases [RCV000053524] Chr5:106619588..156124387 [GRCh38]
Chr5:105955289..155551397 [GRCh37]
Chr5:105983188..155483975 [NCBI36]
Chr5:5q21.3-33.2
pathogenic
GRCh38/hg38 5q31.3(chr5:140963199-142322798)x1 copy number loss See cases [RCV000136949] Chr5:140963199..142322798 [GRCh38]
Chr5:140453735..141702363 [GRCh37]
Chr5:140322968..141682547 [NCBI36]
Chr5:5q31.3
uncertain significance
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3 copy number gain See cases [RCV000138808] Chr5:129847794..153353546 [GRCh38]
Chr5:129183487..152733106 [GRCh37]
Chr5:129211386..152713299 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.3-32(chr5:141089988-149530678)x3 copy number gain See cases [RCV000139504] Chr5:141089988..149530678 [GRCh38]
Chr5:140469572..148910241 [GRCh37]
Chr5:140449756..148890434 [NCBI36]
Chr5:5q31.3-32
pathogenic
GRCh38/hg38 5q31.2-31.3(chr5:138942857-144605017)x3 copy number gain See cases [RCV000142806] Chr5:138942857..144605017 [GRCh38]
Chr5:138278546..143984580 [GRCh37]
Chr5:138306445..143964773 [NCBI36]
Chr5:5q31.2-31.3
uncertain significance
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3
likely benign
NC_000005.9:g.(?_86400000)_(154000000_?)del deletion Familial adenomatous polyposis 1 [RCV002231249]|Hereditary cancer-predisposing syndrome [RCV000554476] Chr5:86400000..154000000 [GRCh37]
Chr5:5q14.3-33.2
pathogenic
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3 copy number gain See cases [RCV000449349] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3
pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q31.3(chr5:140676272-140929172)x3 copy number gain See cases [RCV000512526] Chr5:140676272..140929172 [GRCh37]
Chr5:5q31.3
likely benign
GRCh37/hg19 5q31.2-31.3(chr5:139147238-141540491)x1 copy number loss not provided [RCV000682600] Chr5:139147238..141540491 [GRCh37]
Chr5:5q31.2-31.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787436] Chr5:14685137..149511942 [GRCh37]
Chr5:5p15.2-q32
uncertain significance
GRCh37/hg19 5q31.3-32(chr5:140424333-148985999)x3 copy number gain not provided [RCV000848228] Chr5:140424333..148985999 [GRCh37]
Chr5:5q31.3-32
uncertain significance
NC_000005.9:g.(?_136633338)_(140998481_?)dup duplication PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome [RCV001339088] Chr5:136633338..140998481 [GRCh37]
Chr5:5q31.2-31.3
uncertain significance
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910) copy number gain not specified [RCV002053526] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
GRCh37/hg19 5q31.3(chr5:140082762-140773954)x3 copy number gain not provided [RCV002474614] Chr5:140082762..140773954 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.728A>G (p.Asp243Gly) single nucleotide variant Inborn genetic diseases [RCV002707627] Chr5:141319317 [GRCh38]
Chr5:140698884 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.593A>G (p.Asp198Gly) single nucleotide variant Inborn genetic diseases [RCV002950351] Chr5:141319452 [GRCh38]
Chr5:140699019 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.961G>A (p.Val321Ile) single nucleotide variant Inborn genetic diseases [RCV002980043] Chr5:141319084 [GRCh38]
Chr5:140698651 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.100T>G (p.Ser34Ala) single nucleotide variant Inborn genetic diseases [RCV002764242] Chr5:141319945 [GRCh38]
Chr5:140699512 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.844C>A (p.Gln282Lys) single nucleotide variant Inborn genetic diseases [RCV002981852] Chr5:141319201 [GRCh38]
Chr5:140698768 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.637T>C (p.Ser213Pro) single nucleotide variant Inborn genetic diseases [RCV002648914] Chr5:141319408 [GRCh38]
Chr5:140698975 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.1044G>C (p.Glu348Asp) single nucleotide variant Inborn genetic diseases [RCV002668472] Chr5:141319001 [GRCh38]
Chr5:140698568 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.526G>A (p.Ala176Thr) single nucleotide variant Inborn genetic diseases [RCV003191486] Chr5:141319519 [GRCh38]
Chr5:140699086 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.388T>C (p.Phe130Leu) single nucleotide variant Inborn genetic diseases [RCV003215214] Chr5:141319657 [GRCh38]
Chr5:140699224 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.718G>A (p.Asp240Asn) single nucleotide variant Inborn genetic diseases [RCV003260808] Chr5:141319327 [GRCh38]
Chr5:140698894 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005642.3(TAF7):c.755A>T (p.Asp252Val) single nucleotide variant Inborn genetic diseases [RCV003283765] Chr5:141319290 [GRCh38]
Chr5:140698857 [GRCh37]
Chr5:5q31.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:154
Interacting mature miRNAs:160
Transcripts:ENST00000313368
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SGC31525  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,698,296 - 140,698,514UniSTSGRCh37
Build 365140,678,480 - 140,678,698RGDNCBI36
Celera5136,775,122 - 136,775,340RGD
Cytogenetic Map5q31UniSTS
HuRef5135,843,356 - 135,843,574UniSTS
TNG Radiation Hybrid Map565216.0UniSTS
GeneMap99-GB4 RH Map5535.09UniSTS
Whitehead-RH Map5443.0UniSTS
NCBI RH Map5891.6UniSTS
RH80950  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,698,069 - 140,698,256UniSTSGRCh37
Build 365140,678,253 - 140,678,440RGDNCBI36
Celera5136,774,895 - 136,775,082RGD
Cytogenetic Map5q31UniSTS
HuRef5135,843,129 - 135,843,316UniSTS
GeneMap99-GB4 RH Map5527.45UniSTS
D5S2599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,699,389 - 140,699,571UniSTSGRCh37
Build 365140,679,573 - 140,679,755RGDNCBI36
Celera5136,776,215 - 136,776,397RGD
Cytogenetic Map5q31UniSTS
HuRef5135,844,449 - 135,844,631UniSTS
Stanford-G3 RH Map53994.0UniSTS
GeneMap99-G3 RH Map53989.0UniSTS
STS-U18062  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,698,300 - 140,698,528UniSTSGRCh37
Build 365140,678,484 - 140,678,712RGDNCBI36
Celera5136,775,126 - 136,775,354RGD
Cytogenetic Map5q31UniSTS
HuRef5135,843,360 - 135,843,588UniSTS
GeneMap99-GB4 RH Map5531.52UniSTS
NCBI RH Map5889.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 6
Medium 2439 2914 1725 623 1910 464 4357 2162 3701 417 1454 1613 175 1 1204 2788 6 2
Low 77 1 1 41 1 35 33 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF349038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MW827583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MW827584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MZ379836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X97999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z65839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z65840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000313368   ⟹   ENSP00000312709
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5141,318,490 - 141,320,784 (-)Ensembl
RefSeq Acc Id: ENST00000624699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5141,260,225 - 141,320,645 (-)Ensembl
RefSeq Acc Id: ENST00000624761   ⟹   ENSP00000485510
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5141,318,995 - 141,320,781 (-)Ensembl
RefSeq Acc Id: ENST00000686518
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5141,259,884 - 141,320,592 (-)Ensembl
RefSeq Acc Id: NM_005642   ⟹   NP_005633
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385141,318,490 - 141,320,784 (-)NCBI
GRCh375140,698,057 - 140,700,351 (-)ENTREZGENE
Build 365140,678,241 - 140,680,535 (-)NCBI Archive
HuRef5135,843,117 - 135,845,411 (-)ENTREZGENE
CHM1_15140,131,262 - 140,133,556 (-)NCBI
T2T-CHM13v2.05141,843,793 - 141,846,087 (-)NCBI
Sequence:
RefSeq Acc Id: NP_005633   ⟸   NM_005642
- UniProtKB: B2RBV9 (UniProtKB/Swiss-Prot),   Q13036 (UniProtKB/Swiss-Prot),   Q15545 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000485510   ⟸   ENST00000624761
RefSeq Acc Id: ENSP00000312709   ⟸   ENST00000313368
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q15545-F1-model_v2 AlphaFold Q15545 1-349 view protein structure

Promoters
RGD ID:6852382
Promoter ID:EP73998
Type:initiation region
Name:HS_TAF7
Description:TAF7 RNA polymerase II, TATA box binding protein (TBP)-associatedfactor, 55kDa.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 365140,680,535 - 140,680,595EPD
RGD ID:6870938
Promoter ID:EPDNEW_H8633
Type:initiation region
Name:TAF7_1
Description:TATA-box binding protein associated factor 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385141,320,784 - 141,320,844EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11541 AgrOrtholog
COSMIC TAF7 COSMIC
Ensembl Genes ENSG00000178913 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000313368 ENTREZGENE
  ENST00000313368.8 UniProtKB/Swiss-Prot
  ENST00000624761 UniProtKB/TrEMBL
  ENST00000624761.2 UniProtKB/Swiss-Prot
GTEx ENSG00000178913 GTEx
HGNC ID HGNC:11541 ENTREZGENE
Human Proteome Map TAF7 Human Proteome Map
InterPro TAF7 UniProtKB/Swiss-Prot
  TAFII55_prot_cons_reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6879 UniProtKB/Swiss-Prot
NCBI Gene 6879 ENTREZGENE
OMIM 600573 OMIM
PANTHER PTHR12228 UniProtKB/Swiss-Prot
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 UniProtKB/Swiss-Prot
Pfam TAFII55_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA36316 PharmGKB
SMART TAFII55_N UniProtKB/Swiss-Prot
UniProt A0A096LPC3_HUMAN UniProtKB/TrEMBL
  B2RBV9 ENTREZGENE
  Q13036 ENTREZGENE
  Q15545 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2RBV9 UniProtKB/Swiss-Prot
  Q13036 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 TAF7  TATA-box binding protein associated factor 7  TAF7  TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa  Symbol and/or name change 5135510 APPROVED