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Gene: NYNRIN (NYN domain and retroviral integrase containing) Sus scrofa

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Symbol:

NYNRIN

Name:

NYN domain and retroviral integrase containing

RGD ID:

14026531

Description:

ENCODES a protein that exhibits nucleic acid binding (inferred); RNA-DNA hybrid ribonuclease activity (inferred); INVOLVED IN DNA integration (inferred); DNA metabolic process (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); hepatoblastoma (ortholog); lysinuric protein intolerance (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	74,879,260 - 74,898,568 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	74,877,910 - 74,898,596 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,148,821 - 80,169,569 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

hepatoblastoma (ISO)

lysinuric protein intolerance (ISO)

Specific Granule Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA integration (IEA)

DNA metabolic process (IEA)

Cellular Component

cytoplasmic ribonucleoprotein granule (IBA)

nucleus (IBA)

Molecular Function

mRNA binding (IBA)

nucleic acid binding (IEA)

RNA endonuclease activity (IBA)

RNA-DNA hybrid ribonuclease activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

NYNRIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	74,879,260 - 74,898,568 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	74,877,910 - 74,898,596 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,148,821 - 80,169,569 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NYNRIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	24,399,003 - 24,419,283 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	24,399,003 - 24,419,283 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	24,868,209 - 24,888,489 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,937,832 - 23,958,334 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	23,946,953 - 23,958,328	NCBI
Celera	14	4,732,635 - 4,753,130 (+)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	4,982,163 - 5,003,157 (+)	NCBI		HuRef
CHM1_1	14	24,866,568 - 24,887,067 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	18,597,752 - 18,618,021 (+)	NCBI		T2T-CHM13v2.0

Nynrin
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	56,091,572 - 56,112,193 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	56,091,467 - 56,112,193 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	55,854,115 - 55,874,736 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,854,010 - 55,874,736 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	56,472,952 - 56,493,573 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,808,087 - 54,828,812 (+)	NCBI		MGSCv36	mm8
Celera	14	53,656,002 - 53,676,413 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.19	NCBI

Nynrin
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	33,302,778 - 33,325,120 (+)	NCBI		GRCr8
mRatBN7.2	15	29,332,873 - 29,355,215 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	29,332,869 - 29,355,215 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	34,520,040 - 34,541,671 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	34,520,142 - 34,539,930 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	38,408,544 - 38,429,969 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	15	28,907,311 - 28,928,945 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

Nynrin
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	35,889,773 - 35,910,771 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	35,890,158 - 35,910,859 (-)	NCBI	ChiLan1.0	ChiLan1.0

NYNRIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	25,753,394 - 25,774,318 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,969,975 - 24,991,457 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	5,174,889 - 5,195,706 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	23,298,139 - 23,318,905 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	23,298,139 - 23,318,905 (+)	Ensembl	panpan1.1		panPan2

NYNRIN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,368,702 - 4,389,565 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	4,368,560 - 4,387,842 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,290,642 - 4,311,331 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,480,427 - 4,501,112 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,480,470 - 4,501,112 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	4,169,884 - 4,190,658 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,232,603 - 4,253,276 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,494,843 - 4,515,537 (+)	NCBI		UU_Cfam_GSD_1.0

Nynrin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	36,233,896 - 36,254,730 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	134,190 - 155,115 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	134,221 - 155,020 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NYNRIN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	1,380,864 - 1,401,710 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	1,381,483 - 1,401,750 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	13,067,287 - 13,087,957 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nynrin
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	8,094,908 - 8,118,679 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624820	8,093,119 - 8,114,465 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in NYNRIN
366 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005666233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT997804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01086957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000051953 ⟹ ENSSSCP00000053168

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	74,879,260 - 74,898,382 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000079132 ⟹ ENSSSCP00000072630

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	74,879,726 - 74,898,568 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000084763 ⟹ ENSSSCP00000063120

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	74,879,726 - 74,898,568 (-)	Ensembl

RefSeq Acc Id:

XM_005666233 ⟹ XP_005666290

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	74,877,910 - 74,898,596 (-)	NCBI

Sequence:

show sequence

AGGAAGAGATTGTCTCGGGAGCCGCCGCCGCCGCCGCCGAAAGGCACGGAGCTCAGGGGGAAGG
GCGCCCGAGCCGCGGAGGGGGCGGGCGGGGCAGTCATGCTCCTGTCCGGGGGCGACCCTCCGGC
GCAGGAATGGTTCATGGTGCAGACCAAGTCGAAGCCCCGGGTGCAGCGGCAGAGGCTGCAAGTG
CAGCGCATCTTCAGGGTCAAGCTGAACGCTTTCCAGAGCCGCCCGGACACCCCCTACTTCTGGC
TGCAGCTCGAAGGGCCCAGGGAGAACATGGGCAAAGCCAAGGAGTATCTGAAGGGCCTGTGCAG
CCCGGAGCTGTGGAAGGAGGTTCGCTACCCGGCAGCCCTGCACTGCGCCTTCCTCGGGGCCCAG
GGCCTCTTCCTGGACTGCCTGTGCTGGAGCACCCTGGCCTACCTGGTGCCTGGCCCCCCGGGCT
CCCTGATGGTGGGCGGGCTGACCGAGTCTTTCATCATGACCCAGAACTGGCTGGAGGAGCTGGT
GGGGCGGCTGCGCTGGGGCCCTGCCCCTCTGCTCACTCCCCGTGGCATCTGGGAGGCCGAGGTG
ACCCGGGCCTTTGGGGCCCTGGTCTGGATCCGTGGTGACCAGTATGCGGGGGACCTGCTGCAGC
TGCCCCCAGCGGTCCAGGAACTGCTGCTGAGCCTGGTGCGGGATGCTGCTGGCAAGGAGGACAT
CATCCAGTGGCTCGGCCGCATTGGCTCCTCGGATTCCCGCTCTGACCCTGAGCAGCTCCTGATC
TGCCCGACCCCCCAGCAGAAGGAAGGCCCAGCCATGGTGTCTGTTGGAGATGGTACTGGGCCCT
TTCTGGAGATGGGGAGTCCAGAAAATTCAAAGAAATTAACCAGCCTGGGAGCCATGGGGGCCCT
AACCTCGGGCCTCCCACCGGAACACCCAGCCGAGGCAGGAAACCAGCTGGTACGGGCCAGTTCC
AACAACCAAGGTGGTATGGACAGTGCTCATGAGGCCGGACCAGTACAAGCCAGCAGCAGCCAGG
ACCCTGTGGACCACACACAAGCCTTGTCGCAGCAAAGGCAGGTCCGGAGGGGGGAAGACAAGCT
CCCCCTCCAGCCTCCGGTGTCAGCCCTGGGTGTGTGCTCTCCCTGGAAAGCCTGGACTCCGGGG
CCAGCCTTTGGGCCCCTGTGGCCGGGGGCTATTGCTGCAACCTTCTGGAGGATCAATGAACTGC
ATTCTCTCCACCTGGCGTGGCTCCTGTCCCAGGCCTGCTTCAGTTTCCCCTTCTGGCAGAGGCC
GCTGGGCCCCATTCAGTTCAAGCTGCCAGGGCAGAACCCTTTGCCCTTAAATCTGGAATGGAAA
CAGAAGGAGCTGGTTCCCTTGCCCAGTGTGGAAGGTCCAGACTGTAGACCGGATGGGGGCCCCG
GGGGAGAGACAGCCCTGCAGAACTGTCCAAGACCAGAGACTCCTAACAACGTCATGAGTTTATT
GGTGGTCTCAGGAGGCTCAGGGGTGAAGGACAAGGCTAACCCAGCACTTCCACAGATAGGGCCA
CCTTTGACCTCTGCACCCCAGCTCCAAGCTAGAAGTGAACCAGGTGATCAAGGAAGTATGCAGT
GGGATAATAAGAGGCCAGAAGAGGGGCCCTTTCCAGTGATGCCCACAGGGCAAGGGGTGCCCAC
TGCTCAGGGGAGGCCAAAGGCTCAAGGGGGGCTGGCAGCTCCAGTAGGACCTGACCCTAAAACA
GTGCCTGAAACTTGCAAAGTGCCCATGGCTGCAGCAATGCCCACAGCTCAGACCCCACCTGCCA
ATCCGGCGCTGCCTGCACCCCCCAAAGTGCCTGCAACCCAGATGATGCCGGCGGTCCATGAAGA
ACCTGCAGCCCCTAAAGTGCCTTTGGCTCCCATGAAGCCAGCAGCTCAAGTGCTGCCCACAGCT
CAAAAGGCAGTTGTGGGTAGACTGGCACCAGCAGCTCAAATGGTACCTGCAGCGCCAAAAACTC
CCACAGTTCAGAAAAGGCCTGCGGCAAAAACATCACCTGCAGGTCCCCAAACACCAAGAGCCCA
GACTGGACCTGTAGCTAAACCAGGGTCTACAGCTCCCAAAACCCCCACAGCCCCCAAAGCCCCT
GCAGCTCCCAAAGCACCTGCAGCTCCTAAGACTTCCAGAGCTCCGAAAACGCCTACAGCTCAGA
AGGCACCCACAGATCCAGGGCCAACCCTGGATGTAGCCAAACTCCTAAGTGAGGGCCAGCCTTC
TTCAAAGGGCAGGGCTTCCTTTCTGAAGAGCCAGGGGGAACCCGGAAGGCAGGGGCCCCCATCC
AGTGGCACCTTAGCTCCCAGTAGTAAGGGCCAACCTCAGGTAGAGGGGTTCCTGGGAGCTTGGG
AGGGAGCCCCGAGGCAGCCACCTCGCCACCCCCAGGCAAACAGCACAGTGACTAGCTTCCAGAG
GTACCACGAGGCCCTGAACACACCCTTCGAGCTGAACCTTTCAGGAGAACCCGGGAACCAGGGG
TTGCGACGAGTGGTCATTGACGGTAGCAGCGTAGCCATGGTGCATGGCCTCCAGCACTTCTTCT
CCTGCCGGGGCATTGCCATGGCTGTGCAGTATTTCTGGAACCGGGGACACCGAGAAGTCACTGT
GTTTGTTCCCACCTGGCAGCTGAAGAAGAACCGGAGGGTGAGAGAGAGCCACTTTCTGACAAAG
CTCCACTCCCTCAAGATGCTTTCAATCACACCTTCCCAGCTCGAGAACGGCAAGAAGATCACCA
CCTACGATTATAGGTTCATGGTAAAGCTGGCAGAAGAGACAGATGGCGTCATTGTCACCAATGA
GCAGCTTCATGTCCTGATGAATAATTCTAAGAAACTGATGGTCAAAGATCGCCTGCTGCCCTTC
ACCTTTGCGGGGAATCTCTTCATGGTGCCTGACGACCCCCTGGGCCGTGATGGCCCCACCCTGG
ATGAGTTTCTGAAGAAGCCAAACAGGTTGGACACTGACATTGGCAACTTCCTGAAGGTGTGGAA
GACCCTTCCTCCCAGCTCGGCCAGCCTCTCTGAGCCAGTGGATGAGGCTGACCCTTGGCCCCCA
GAGAGTCTGCAGAGTGTGAAAGAAGTCAGGGAGGAGAAGGAGGAGAGGCAGGACGAGGAGCAGA
GAGAGGAGCAAGAGACGCAGAAGCTGGCCGAGGAGGAGGAGGAGGAGGAGGAGGAAAAGGAGGA
GGATGACGATCAGGACTCTTTGCTGGTGTCTGTGTTCAGGGCTGAGTGTCCTTCCCTCTCAGAG
GAAATACTCCGGTGCCTCAGCCTCCACGACCCTATGGACGAGGCCCTTGACATTGATCTCCTGC
CAGTGGTGGCTTCTCCCTCCCTGGACATCCCTTGGGACGGGAAGGCCCCCTGCCAGCAGGTTCT
GGCCCACCTGGCCCAGCTGACCATCCCTAGCAACTTCACCGCACTCTCCTTCTTTGTGGGGTTC
ATGGACTCCCACCGGGACGTCATCCCCGACTATGAAGCCCTCGTGGGCCCCCTGCACAGCCTCC
TCAAGCAGAAGCCGGACTGGCAGTGGGCCCTGGAGCACGAGAAGGCTTTCCTGGCCCTGAAGCG
AGCCCTGGTGTCTGCCCTCTGCCTGTCGGCCCCCAACTCCCAGCTGCCCTTCCGCCTGGAGGTG
ACAGTGAGCCAAGTGGCCCTGATGGCCGTAGTGTACCAAGAGCACTCAGGAAGAAAGCACCCTG
TAGCCTATACCTCGAAACCCCTCCTCCCAGACGAGGAGAGCGCGGGCCCCCAGTCGGGGGGAGA
CAGCCCCTACGCCGTGGCCTGGGCCCTCAAGTATTTTTCCCGCTGCATTGGAGACACCCCAGTG
GTCCTGGGCCTTTCCTACGCCTCCCGGACCACTGCGGACCCTGAGGCGTGGGACGGCCGCCGGC
TCGCCAAGGCGTGGTTGATCCGGTGGTCCCTCCTGGTGCAGGACAAGGGCAAGAGGGCACTGGA
ACTGGCCCTTCTCCAGGGTCTGCTGGGGGAAAACCGGCTGCTGACTCCCGCGGCCTCCATGCCT
CGTTTTTTCCAGGTTCTGCCTCCTTTTTCCGACCTGTCCACTTTTGTCTGCATCCACATGTCGG
GCTACTGCTTTTACCGAGAGGACGAGTGGTGTGCTGGCTTTGGTCTCTATGTCCTGTCTCCCAC
CAGCCCCCCGGTCTCCCTTTCCTTCTCTTGCTCCCCTTACACACCCACCTACGCCCACCTGGCG
GCCGTGGCCTGTGGCCTGGAGCGCTTTGGCCGGTCCCACCTGCCTGTGGTTTTCCTCACGCACT
GCAACTGGATCTTCAGCCTCCTCTGGGAGCTCCTGCCGCTGTGGAGGGCACGGGGCTTCCTCTC
CTCCGATGGGGCTCCGCTGCCTCATCCAGGCCTGCTCTCCTACATCATAGCCCTGGTCTCCGGC
CTCTCATCCCTTCCGTTTATCTACCGAACCTCCTACCGGGGTTCCCTGTTTGCTGTGACGGTGG
ACACTCTGGCCAAGCAGGGTGCCCAGGGGAGCGGCCAGTGGTGGCATTTGCCAAACGATGTGCC
GGTCCCTGTGGTGACTCGCCGCACCGCAGGCAAGAAGCCCGACTTGCTGGCGTTACAGCGGAGC
GACAGCACCCTGGCCGACATCATTGCCAAGCTGCAGGCCGGGCAGAAATTACCTAACTCCTCAC
CGTTCAGTTCTGCCTTTAACTCCCTCAGCCTCGACAGGGAAAGCGGGCTGCTTATGTTCAAGGG
AGACAAGAAGCCCAGGGTCTGGGTGGTCCCGAGGCAGCTCCGGAGGGATCTGATTTTCGCGGTA
CACGACCTCCCCATGGGGGGCCACCAGAGGCCGGAGGAGACCTTCAAGAAGCTGCGGCTGCTGG
GGTGGTGGCCGGGGATGCAGGAGCACGTGAGAGAATACTGCAGGAGCTGCCTGTACTGCATCCC
CCGGAATCTCACAGGCAGTGAGTTGAAGGTCATTGAGTCCCTGTGGCCCCTCAGGTCCACGGCC
CCCTGGTCAAACCTGCAGATCGAGGTGGTGGGCCCGGTCACCGTCAGCGAGGAGGGCCACAAGC
ACGTGTTGATCGTGGCTGACCCCAACACCAGGTGGGTGGAGGCCTTCCCGCTGAAGCCCTACAC
GCACATGGCTGTGGCCCAGGTGCTGCTTCAGCACGTGTTCGCCAGGTGGGGCGTTCCTGTGAGG
CTGGAGGCTGCCCAGGGCCCCCACTTTGCCCGCCATGTCCTGGTGAGCTGTGGGCTAGCTCTGG
GGGCCCAGGTGGCATCCCCGAGTAGGGACTTGCAGTTCCCCTGCCTGACAAGCTCCGGGGCCTA
CTGGGAATTCAAGAGGGCCCTCAAGGAATTCATCTTCCTGCACGGCAAGAAGTGGGCAGCGTCC
CTGCCCCTGTTGCACCTGGCCTTCAGGGCCTCCTCTGGCCTGGCCACGCCGTTCCAGATCCTGA
CCGGGGGCGAGGAGAGGCTGACCGAGCCCCTGTGGTGGGAGATGAGCAGCGCAAACATTGAGGG
GCTCAAGATGGATGTCTTCTTGCTACAGCTGATGGGGGAGCTGCTGGAGCTCCACTGGCGGGTG
GCTGAGAAGGCAAGCGAAAAGGCTGAGAATAGGCGTTTCAAGAGGGAGAGCCAGGAGAAGGAGT
GGAACGTGGGTGACCAGGTCCTCTTGCTGTCCCTCCCCAGGAATGGCAGCAGTGCCAAATGGGT
CGGTCCCTTCTATATTGGGGACCGGCTGAGCCTGTCCCTCTACAGGGTCTGGGGCTTCCCTACC
CCGGAGAAGCTCGGGTGCATCTATCCTAGCAGTCTGATGAAGACCTTTGCCAAGAGCGGCACCC
CCCTGTCCTTCAAGGTCTTGGAGCAGTGAGCTGGAGTAGTGGGGGAGCCCCCACTCCGGGGTCC
TGGGCTTCTGCTGCTAGGCCTCCCCCTGCCCCCAGCAGTGTTCTGGGGTAGGGAGGGAGGCCCT
TTCGTTGTGCCTTTTGTAGAGAAATTACTTCATCATGCTTTGCTGAATTGCCTTGAACTAGGGA
CCAATATCTCTATGGAGACATCCTCAGTATAGGGGATTGGGAGAATCTGCTAAAGGCTGTGAGA
TGTGGGCCTCTGGCAGTTTTACCTGGGGTTGGAGGTAGAGAGGTCCCTCTCTGAGGTAGGTCAG
GTTTAGTGTCTCTCCCCAAGTGAAAGTGTACACACACAAACACACCCACCCACGTGCATACACC
AGAGCCTGATGTCTTAACCATGAAACACTGTGGCTCTGGAGCTCAGAATCAAAAACCATATTCC
TCTCTCAAACAGAAACCTCAGATGTTGGCTCCCCCACCCCCAAGTCTGTTCATTTGGGGACCCT
TTGCCCTTGAAGCTGTCACAGCTGACACAAATCCATGCAGGCTGTGGAGAAGCAGCCTGTTCCC
AGTCTCACGGTCCGCTCTCTCAGGCCAGGTTAGGCCTGCCCAGCTGTCAAGGGAGGGCCGGTGA
TCCTGGGCGCCAAGGCTCAGAAGTGGGGCGGGAGTGTGGCCAGCCAGGTAGGCACATCCTGCAG
TAGCACGGGAAAGGCAAGGAGGAGACAGAGTCAGCCTACCTCATTTGACTGCGGCCGGTGGAGA
CACACTCACATCCCAGCTTCGATGATGTCAATCCCACAGGAATCAAGGATCTCAGTGCCAAGTG
TGGCATCTCTATCTGAAGAGCTGCTTCAACTAGACCAAGGGGCCTGGGCCTCTGTATCGGGGGA
GGGTGACTGAAATGAGCGGTCTGGCACATGGCGAGGTGCTAGCGTGGCTCTACCTCCCCATCCC
CCCCCCAGCCCTCTCCTCCCCCTGCCGTGTACCCTGCACCCCCAGACCCTACATAGTGTATGAC
TGCTTTGTTTGGATCCCTGCCCCCACCCCACCCCAGTTCTCTGGCCCTGCCTTCTGTGTAGAGA
AAATCCTCTGCCAAAATCACCCTCTGCAAGTGTGCATTTCTCACAGGTGTGTGTGCCTACACCC
ACCTCCCAGCTGCTGCTGCCCACAGAGCGGGCTCCAGCTGGAGGTCAGCACTGTGTCGCTCTGG
CTGGGCCTCTAAGTAGTTTTATTTCTCCAAAGCTGAGCCAGTCTCCTGGCCTAGCTCAGGTTGC
CAAAACACTTGAAGTTGCTAGAGCCACGGTAGAACCTGCCATTGAGTCCCATTTGCGTGTCTTA
TGGAGAGAGGCCCAGAGAGGGGACGTGACTTGCCCAAAGTCACACAGATAGTTGGTGGCTGAGC
TGGGGCCAGGATTAAGCTTCCTGATTCTCAGATCACCATAGACAGGGTTCGGTTCAAGCAAGAG
AAGCTCCCTTAATCCTATACCCATCTTCCTTCCAACTCCCCAGCTCCCAAATCTTGTAGACAAA
CTACTTAGACGTTGCCCTGCAACCCCATCCAGCTGTTAATTCTGCCCAGGAGAGAATGATTGGG
TGACAGCTGAGAAGTTGAAGGGCGAGCTGTGGGATTATTAGCAGATACCTCGTCCCCTCCTCCT
CCTCTCCCTGCTCCCCTCCTTCCTCCTCCTCCCTCTGATGATCTGCCCACCCTCATTCTCCCTC
CCCGGTGCTGTACCCGTTCCCTCTGTGGACCACATTTATCATCTTATACCCTTTTATGTGACCT
TTTTTTTTTTTCTTCATTTGATTTGTCAATAAACGGATCAAAATGGAGCTAAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005666290	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000053168.1
	ENSSSCP00000063120
	ENSSSCP00000063120.1
	ENSSSCP00000072630.1
	ENSSSCP00015031379.1
	ENSSSCP00015031422.1

RefSeq Acc Id:

XP_005666290 ⟸ XM_005666233

- UniProtKB:

A0A5G2QEL3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLLSGGDPPAQEWFMVQTKSKPRVQRQRLQVQRIFRVKLNAFQSRPDTPYFWLQLEGPRENMGK
AKEYLKGLCSPELWKEVRYPAALHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGLTESFI
MTQNWLEELVGRLRWGPAPLLTPRGIWEAEVTRAFGALVWIRGDQYAGDLLQLPPAVQELLLSL
VRDAAGKEDIIQWLGRIGSSDSRSDPEQLLICPTPQQKEGPAMVSVGDGTGPFLEMGSPENSKK
LTSLGAMGALTSGLPPEHPAEAGNQLVRASSNNQGGMDSAHEAGPVQASSSQDPVDHTQALSQQ
RQVRRGEDKLPLQPPVSALGVCSPWKAWTPGPAFGPLWPGAIAATFWRINELHSLHLAWLLSQA
CFSFPFWQRPLGPIQFKLPGQNPLPLNLEWKQKELVPLPSVEGPDCRPDGGPGGETALQNCPRP
ETPNNVMSLLVVSGGSGVKDKANPALPQIGPPLTSAPQLQARSEPGDQGSMQWDNKRPEEGPFP
VMPTGQGVPTAQGRPKAQGGLAAPVGPDPKTVPETCKVPMAAAMPTAQTPPANPALPAPPKVPA
TQMMPAVHEEPAAPKVPLAPMKPAAQVLPTAQKAVVGRLAPAAQMVPAAPKTPTVQKRPAAKTS
PAGPQTPRAQTGPVAKPGSTAPKTPTAPKAPAAPKAPAAPKTSRAPKTPTAQKAPTDPGPTLDV
AKLLSEGQPSSKGRASFLKSQGEPGRQGPPSSGTLAPSSKGQPQVEGFLGAWEGAPRQPPRHPQ
ANSTVTSFQRYHEALNTPFELNLSGEPGNQGLRRVVIDGSSVAMVHGLQHFFSCRGIAMAVQYF
WNRGHREVTVFVPTWQLKKNRRVRESHFLTKLHSLKMLSITPSQLENGKKITTYDYRFMVKLAE
ETDGVIVTNEQLHVLMNNSKKLMVKDRLLPFTFAGNLFMVPDDPLGRDGPTLDEFLKKPNRLDT
DIGNFLKVWKTLPPSSASLSEPVDEADPWPPESLQSVKEVREEKEERQDEEQREEQETQKLAEE
EEEEEEEKEEDDDQDSLLVSVFRAECPSLSEEILRCLSLHDPMDEALDIDLLPVVASPSLDIPW
DGKAPCQQVLAHLAQLTIPSNFTALSFFVGFMDSHRDVIPDYEALVGPLHSLLKQKPDWQWALE
HEKAFLALKRALVSALCLSAPNSQLPFRLEVTVSQVALMAVVYQEHSGRKHPVAYTSKPLLPDE
ESAGPQSGGDSPYAVAWALKYFSRCIGDTPVVLGLSYASRTTADPEAWDGRRLAKAWLIRWSLL
VQDKGKRALELALLQGLLGENRLLTPAASMPRFFQVLPPFSDLSTFVCIHMSGYCFYREDEWCA
GFGLYVLSPTSPPVSLSFSCSPYTPTYAHLAAVACGLERFGRSHLPVVFLTHCNWIFSLLWELL
PLWRARGFLSSDGAPLPHPGLLSYIIALVSGLSSLPFIYRTSYRGSLFAVTVDTLAKQGAQGSG
QWWHLPNDVPVPVVTRRTAGKKPDLLALQRSDSTLADIIAKLQAGQKLPNSSPFSSAFNSLSLD
RESGLLMFKGDKKPRVWVVPRQLRRDLIFAVHDLPMGGHQRPEETFKKLRLLGWWPGMQEHVRE
YCRSCLYCIPRNLTGSELKVIESLWPLRSTAPWSNLQIEVVGPVTVSEEGHKHVLIVADPNTRW
VEAFPLKPYTHMAVAQVLLQHVFARWGVPVRLEAAQGPHFARHVLVSCGLALGAQVASPSRDLQ
FPCLTSSGAYWEFKRALKEFIFLHGKKWAASLPLLHLAFRASSGLATPFQILTGGEERLTEPLW
WEMSSANIEGLKMDVFLLQLMGELLELHWRVAEKASEKAENRRFKRESQEKEWNVGDQVLLLSL
PRNGSSAKWVGPFYIGDRLSLSLYRVWGFPTPEKLGCIYPSSLMKTFAKSGTPLSFKVLEQ

hide sequence

Ensembl Acc Id:

ENSSSCP00000053168 ⟸ ENSSSCT00000051953

Ensembl Acc Id:

ENSSSCP00000063120 ⟸ ENSSSCT00000084763

Ensembl Acc Id:

ENSSSCP00000072630 ⟸ ENSSSCT00000079132

Protein Domains

Integrase catalytic RNase H type-1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000032473	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015058390	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000051953.3	UniProtKB/TrEMBL
	ENSSSCT00000079132.2	UniProtKB/TrEMBL
	ENSSSCT00000084763	ENTREZGENE
	ENSSSCT00000084763.2	UniProtKB/TrEMBL
	ENSSSCT00015077875.1	UniProtKB/TrEMBL
	ENSSSCT00015077950.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.340.70	UniProtKB/TrEMBL
	3.10.20.370	UniProtKB/TrEMBL
	3.30.420.10	UniProtKB/TrEMBL
	3.30.70.270	UniProtKB/TrEMBL
	3.40.50.11980	UniProtKB/TrEMBL
InterPro	DNA/RNA_pol_sf	UniProtKB/TrEMBL
	Integrase_cat-core	UniProtKB/TrEMBL
	Integrase_H2C2	UniProtKB/TrEMBL
	Rev_trsase/Diguanyl_cyclase	UniProtKB/TrEMBL
	RNase_Zc3h12_NYN	UniProtKB/TrEMBL
	RNaseH-like_sf	UniProtKB/TrEMBL
	RNaseH_domain	UniProtKB/TrEMBL
	RNaseH_sf	UniProtKB/TrEMBL
	RT_RNaseH_2	UniProtKB/TrEMBL
	ZC3H12/N4BP1_RNase_Reg	UniProtKB/TrEMBL
NCBI Gene	NYNRIN	ENTREZGENE
PANTHER	N4BP1-RELATED	UniProtKB/TrEMBL
	PROTEIN NYNRIN	UniProtKB/TrEMBL
Pfam	Integrase_H2C2	UniProtKB/TrEMBL
	RNase_Zc3h12a	UniProtKB/TrEMBL
	RT_RNaseH_2	UniProtKB/TrEMBL
PROSITE	INTEGRASE	UniProtKB/TrEMBL
	RNASE_H_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53098	UniProtKB/TrEMBL
	SSF56672	UniProtKB/TrEMBL
UniProt	A0A287B9G4_PIG	UniProtKB/TrEMBL
	A0A5G2QEL3	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2RDT6_PIG	UniProtKB/TrEMBL
	A0A8D0PBV1_PIG	UniProtKB/TrEMBL
	A0A8D0PH67_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:91003	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar