CDCA8 (cell division cycle associated 8) - Rat Genome Database

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Gene: CDCA8 (cell division cycle associated 8) Sus scrofa
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Symbol: CDCA8
Name: cell division cycle associated 8
RGD ID: 14025119
Description: INVOLVED IN cell division (inferred); chromosome organization (inferred); mitotic metaphase chromosome alignment (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromocenter (inferred); chromosome (inferred); chromosome passenger complex (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: borealin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,750,689 - 93,764,836 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,750,694 - 93,764,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CDCA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,750,689 - 93,764,836 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,750,694 - 93,764,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDCA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,692,516 - 37,709,719 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,692,481 - 37,709,719 (+)EnsemblGRCh38hg38GRCh38
GRCh37138,158,188 - 38,175,391 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,930,746 - 37,947,978 (+)NCBINCBI36Build 36hg18NCBI36
Build 34137,827,251 - 37,844,482NCBI
Celera136,436,198 - 36,453,412 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,275,336 - 36,292,634 (+)NCBIHuRef
CHM1_1138,274,230 - 38,291,508 (+)NCBICHM1_1
T2T-CHM13v2.0137,557,243 - 37,574,423 (+)NCBIT2T-CHM13v2.0
Cdca8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,812,258 - 124,830,710 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,812,258 - 124,833,104 (-)EnsemblGRCm39 Ensembl
GRCm384124,918,465 - 124,936,917 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,918,465 - 124,939,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv374124,595,709 - 124,614,161 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,420,769 - 124,439,207 (-)NCBIMGSCv36mm8
Celera4123,240,998 - 123,259,215 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.93NCBI
Cdca8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,461,082 - 142,483,336 (-)NCBIGRCr8
mRatBN7.25137,176,414 - 137,198,686 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,176,417 - 137,198,629 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,879,673 - 139,902,403 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,649,678 - 141,672,408 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,656,859 - 141,679,587 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,911,310 - 142,933,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,911,305 - 142,933,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,680,981 - 146,700,067 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,251,164 - 144,276,352 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5135,697,190 - 135,716,709 (-)NCBICelera
Cytogenetic Map5q36NCBI
Cdca8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,486,452 - 15,499,867 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,486,515 - 15,501,838 (+)NCBIChiLan1.0ChiLan1.0
CDCA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,129,491 - 189,146,874 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,258,572 - 188,275,955 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,965,470 - 36,982,761 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,314,597 - 38,331,625 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,314,597 - 38,331,625 (+)Ensemblpanpan1.1panPan2
CDCA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,796,980 - 4,809,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,798,197 - 4,809,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,044,396 - 5,057,330 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,931,395 - 4,944,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,931,471 - 4,944,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,790,802 - 4,803,734 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,857,151 - 4,870,085 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,873,734 - 4,886,669 (-)NCBIUU_Cfam_GSD_1.0
Cdca8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505854,070,308 - 54,086,901 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,895,640 - 19,912,933 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,895,681 - 19,912,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,151,814 - 95,169,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,151,752 - 95,169,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,640,702 - 21,658,296 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdca8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,418,585 - 20,434,026 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,418,342 - 20,433,763 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDCA8
73 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 2 23 3 2 5 11 9 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000039393   ⟹   ENSSSCP00000039347
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,750,689 - 93,764,836 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000063454   ⟹   ENSSSCP00000037810
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,750,687 - 93,765,483 (+)Ensembl
RefSeq Acc Id: XM_021095971   ⟹   XP_020951630
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,750,694 - 93,764,845 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020951630   ⟸   XM_021095971
- UniProtKB: A0A287A5V3 (UniProtKB/TrEMBL),   A0A4X1VVU4 (UniProtKB/TrEMBL),   A0A8D1TKW4 (UniProtKB/TrEMBL),   A0A8D1N5J1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000039347   ⟸   ENSSSCT00000039393
Ensembl Acc Id: ENSSSCP00000037810   ⟸   ENSSSCT00000063454

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032909 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015003702 UniProtKB/TrEMBL
  ENSSSCG00025028568 UniProtKB/TrEMBL
  ENSSSCG00030039617 UniProtKB/TrEMBL
  ENSSSCG00035021477 UniProtKB/TrEMBL
  ENSSSCG00040013040 UniProtKB/TrEMBL
  ENSSSCG00045004004 UniProtKB/TrEMBL
  ENSSSCG00050059847 UniProtKB/TrEMBL
  ENSSSCG00055002705 UniProtKB/TrEMBL
  ENSSSCG00060074907 UniProtKB/TrEMBL
  ENSSSCG00065001668 UniProtKB/TrEMBL
  ENSSSCG00070027056 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039393 ENTREZGENE
  ENSSSCT00000039393.3 UniProtKB/TrEMBL
  ENSSSCT00015004834.1 UniProtKB/TrEMBL
  ENSSSCT00015004928.1 UniProtKB/TrEMBL
  ENSSSCT00015004982.1 UniProtKB/TrEMBL
  ENSSSCT00025038782.1 UniProtKB/TrEMBL
  ENSSSCT00030055137.1 UniProtKB/TrEMBL
  ENSSSCT00035028015.1 UniProtKB/TrEMBL
  ENSSSCT00040017287.1 UniProtKB/TrEMBL
  ENSSSCT00040017317.1 UniProtKB/TrEMBL
  ENSSSCT00040017347.1 UniProtKB/TrEMBL
  ENSSSCT00045006652.1 UniProtKB/TrEMBL
  ENSSSCT00045006667.1 UniProtKB/TrEMBL
  ENSSSCT00045006679.1 UniProtKB/TrEMBL
  ENSSSCT00050081522.1 UniProtKB/TrEMBL
  ENSSSCT00050081527.1 UniProtKB/TrEMBL
  ENSSSCT00050081533.1 UniProtKB/TrEMBL
  ENSSSCT00055005167.1 UniProtKB/TrEMBL
  ENSSSCT00055005188.1 UniProtKB/TrEMBL
  ENSSSCT00055005218.1 UniProtKB/TrEMBL
  ENSSSCT00060102498.1 UniProtKB/TrEMBL
  ENSSSCT00060102560.1 UniProtKB/TrEMBL
  ENSSSCT00060102708.1 UniProtKB/TrEMBL
  ENSSSCT00065002068.1 UniProtKB/TrEMBL
  ENSSSCT00070054254.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.560 UniProtKB/TrEMBL
  6.10.250.1900 UniProtKB/TrEMBL
InterPro Borealin_C UniProtKB/TrEMBL
  Borealin_N UniProtKB/TrEMBL
  Cell_div_borealin UniProtKB/TrEMBL
NCBI Gene CDCA8 ENTREZGENE
PANTHER AUSTRALIN, ISOFORM A-RELATED UniProtKB/TrEMBL
  BOREALIN UniProtKB/TrEMBL
Pfam Borealin UniProtKB/TrEMBL
  Nbl1_Borealin_N UniProtKB/TrEMBL
UniProt A0A287A5V3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VVU4 ENTREZGENE
  A0A8D1GI22_PIG UniProtKB/TrEMBL
  A0A8D1N5J1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PHX6_PIG UniProtKB/TrEMBL
  A0A8D1TKW4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VVU4 UniProtKB/TrEMBL
VGNC ID VGNC:86470 ENTREZGENE