Cdca8 (cell division cycle associated 8) - Rat Genome Database

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Gene: Cdca8 (cell division cycle associated 8) Heterocephalus glaber
Analyze
Symbol: Cdca8
Name: cell division cycle associated 8
RGD ID: 18925154
Description: INVOLVED IN chromosome organization (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN chromocenter (ortholog); chromosome passenger complex (ortholog); intercellular bridge (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Borealin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,418,585 - 20,434,026 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,418,342 - 20,433,763 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Cdca8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,418,585 - 20,434,026 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,418,342 - 20,433,763 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDCA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,692,516 - 37,709,719 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,692,481 - 37,709,719 (+)EnsemblGRCh38hg38GRCh38
GRCh37138,158,188 - 38,175,391 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,930,746 - 37,947,978 (+)NCBINCBI36Build 36hg18NCBI36
Build 34137,827,251 - 37,844,482NCBI
Celera136,436,198 - 36,453,412 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,275,336 - 36,292,634 (+)NCBIHuRef
CHM1_1138,274,230 - 38,291,508 (+)NCBICHM1_1
T2T-CHM13v2.0137,557,243 - 37,574,423 (+)NCBIT2T-CHM13v2.0
Cdca8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,812,258 - 124,830,710 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,812,258 - 124,833,104 (-)EnsemblGRCm39 Ensembl
GRCm384124,918,465 - 124,936,917 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,918,465 - 124,939,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv374124,595,709 - 124,614,161 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,420,769 - 124,439,207 (-)NCBIMGSCv36mm8
Celera4123,240,998 - 123,259,215 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.93NCBI
Cdca8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,461,082 - 142,483,336 (-)NCBIGRCr8
mRatBN7.25137,176,414 - 137,198,686 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,176,417 - 137,198,629 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,879,673 - 139,902,403 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,649,678 - 141,672,408 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,656,859 - 141,679,587 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,911,310 - 142,933,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,911,305 - 142,933,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,680,981 - 146,700,067 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,251,164 - 144,276,352 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5135,697,190 - 135,716,709 (-)NCBICelera
Cytogenetic Map5q36NCBI
Cdca8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,486,452 - 15,499,867 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,486,515 - 15,501,838 (+)NCBIChiLan1.0ChiLan1.0
CDCA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,129,491 - 189,146,874 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,258,572 - 188,275,955 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,965,470 - 36,982,761 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,314,597 - 38,331,625 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,314,597 - 38,331,625 (+)Ensemblpanpan1.1panPan2
CDCA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,796,980 - 4,809,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,798,197 - 4,809,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,044,396 - 5,057,330 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,931,395 - 4,944,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,931,471 - 4,944,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,790,802 - 4,803,734 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,857,151 - 4,870,085 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,873,734 - 4,886,669 (-)NCBIUU_Cfam_GSD_1.0
Cdca8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505854,070,308 - 54,086,901 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,895,640 - 19,912,933 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,895,681 - 19,912,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,750,689 - 93,764,836 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,750,694 - 93,764,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDCA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,151,814 - 95,169,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,151,752 - 95,169,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,640,702 - 21,658,296 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017356   ⟹   ENSHGLP00000017183
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476420,418,585 - 20,434,026 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000017357   ⟹   ENSHGLP00000017184
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476420,418,585 - 20,434,026 (+)Ensembl
RefSeq Acc Id: XM_004850992   ⟹   XP_004851049
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476420,418,342 - 20,433,763 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004851049 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB17135 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017184
  ENSHGLP00100003625
Reference Protein Sequences
RefSeq Acc Id: XP_004851049   ⟸   XM_004850992
- UniProtKB: G5C6H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017184   ⟸   ENSHGLT00000017357
RefSeq Acc Id: ENSHGLP00000017183   ⟸   ENSHGLT00000017356


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012308 Ensembl, ENTREZGENE
  ENSHGLG00100002764 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000017357 ENTREZGENE
  ENSHGLT00100003685 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.560 UniProtKB/TrEMBL
  6.10.250.1900 UniProtKB/TrEMBL
InterPro Borealin_C UniProtKB/TrEMBL
  Borealin_N UniProtKB/TrEMBL
  Cell_div_borealin UniProtKB/TrEMBL
KEGG Report hgl:101700921 UniProtKB/TrEMBL
NCBI Gene Cdca8 ENTREZGENE
PANTHER AUSTRALIN, ISOFORM A-RELATED UniProtKB/TrEMBL
  BOREALIN UniProtKB/TrEMBL
Pfam Borealin UniProtKB/TrEMBL
  Nbl1_Borealin_N UniProtKB/TrEMBL
UniProt G5C6H4 ENTREZGENE, UniProtKB/TrEMBL