MTFR2 (mitochondrial fission regulator 2) - Rat Genome Database

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Gene: MTFR2 (mitochondrial fission regulator 2) Sus scrofa
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Symbol: MTFR2
Name: mitochondrial fission regulator 2
RGD ID: 13992666
Description: INVOLVED IN aerobic respiration (inferred); mitochondrial fission (inferred); mitochondrion organization (inferred); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); genetic disease (ortholog); immunodeficiency 27A (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DUF729 domain containing 1; FAM54A; family with sequence similarity 54, member A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,908,824 - 28,015,101 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,906,162 - 27,998,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,398,310 - 31,486,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
MTFR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,908,824 - 28,015,101 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,906,162 - 27,998,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,398,310 - 31,486,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTFR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386136,231,034 - 136,250,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6136,231,024 - 136,250,335 (-)EnsemblGRCh38hg38GRCh38
GRCh376136,552,172 - 136,571,449 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366136,593,861 - 136,613,142 (-)NCBINCBI36Build 36hg18NCBI36
Build 346136,593,860 - 136,613,142NCBI
Celera6137,292,609 - 137,311,889 (-)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6134,116,804 - 134,136,084 (-)NCBIHuRef
CHM1_16136,814,686 - 136,833,971 (-)NCBICHM1_1
T2T-CHM13v2.06137,419,143 - 137,438,419 (-)NCBIT2T-CHM13v2.0
Mtfr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391020,223,491 - 20,237,415 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1020,223,516 - 20,237,050 (+)EnsemblGRCm39 Ensembl
GRCm381020,344,653 - 20,361,669 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1020,347,770 - 20,361,304 (+)EnsemblGRCm38mm10GRCm38
MGSCv371020,067,625 - 20,081,475 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361020,037,241 - 20,050,735 (+)NCBIMGSCv36mm8
Celera1020,236,666 - 20,250,342 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map109.75NCBI
Mtfr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,942,814 - 16,958,218 (+)NCBIGRCr8
mRatBN7.2115,123,232 - 15,138,632 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl115,070,894 - 15,148,832 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx114,877,372 - 14,892,479 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,879,304 - 20,894,408 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0115,103,132 - 15,118,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,834,779 - 15,850,424 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,782,477 - 15,860,624 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0117,379,823 - 17,394,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera113,553,856 - 13,569,459 (+)NCBICelera
Cytogenetic Map1p12NCBI
Mtfr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955439646,432 - 663,033 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955439643,289 - 662,921 (+)NCBIChiLan1.0ChiLan1.0
MTFR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25156,201,929 - 156,226,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16154,100,726 - 154,124,456 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06133,995,679 - 134,014,947 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16138,085,517 - 138,104,764 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6138,084,908 - 138,104,740 (-)Ensemblpanpan1.1panPan2
MTFR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1128,830,818 - 28,844,875 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl128,830,867 - 28,844,710 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha129,708,976 - 29,723,038 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0128,986,198 - 29,000,267 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl128,984,794 - 29,000,115 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1128,872,409 - 28,886,470 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0128,755,384 - 28,769,446 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,056,087 - 29,070,152 (-)NCBIUU_Cfam_GSD_1.0
Mtfr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946123,881,482 - 123,893,809 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365603,660,705 - 3,671,917 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365603,656,639 - 3,670,923 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTFR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11337,173,430 - 37,192,734 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1337,174,438 - 37,192,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660409,361,104 - 9,383,691 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtfr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248861,434,253 - 1,444,462 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248861,431,171 - 1,446,007 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MTFR2
3149 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 5 2 3
Below cutoff 1 2 1 1 14 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000004603   ⟹   ENSSSCP00000004500
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl127,908,824 - 28,015,101 (+)Ensembl
RefSeq Acc Id: NM_001190176   ⟹   NP_001177105
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1127,908,789 - 27,923,634 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654380   ⟹   XP_005654437
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1127,906,162 - 27,927,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013984860   ⟹   XP_013840314
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1127,906,162 - 27,998,861 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013840314   ⟸   XM_013984860
- Peptide Label: isoform X1
- UniProtKB: F1S3R9 (UniProtKB/TrEMBL),   A0A8D1Y5F9 (UniProtKB/TrEMBL),   A0A480JPD4 (UniProtKB/TrEMBL),   A0A4X1VKM6 (UniProtKB/TrEMBL),   A0A8D0XBW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654437   ⟸   XM_005654380
- Peptide Label: isoform X1
- UniProtKB: F1S3R9 (UniProtKB/TrEMBL),   A0A8D1Y5F9 (UniProtKB/TrEMBL),   A0A480JPD4 (UniProtKB/TrEMBL),   A0A4X1VKM6 (UniProtKB/TrEMBL),   A0A8D0XBW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177105   ⟸   NM_001190176
- UniProtKB: A0A8D1ABJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004500   ⟸   ENSSSCT00000004603


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004164 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005039740 UniProtKB/TrEMBL
  ENSSSCG00015053795 UniProtKB/TrEMBL
  ENSSSCG00030053254 UniProtKB/TrEMBL
  ENSSSCG00035051236 UniProtKB/TrEMBL
  ENSSSCG00040017462 UniProtKB/TrEMBL
  ENSSSCG00050077120 UniProtKB/TrEMBL
  ENSSSCG00055024671 UniProtKB/TrEMBL
  ENSSSCG00065028315 UniProtKB/TrEMBL
  ENSSSCG00070024885 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004603 ENTREZGENE
  ENSSSCT00000004603.4 UniProtKB/TrEMBL
  ENSSSCT00005063511.1 UniProtKB/TrEMBL
  ENSSSCT00005063537.1 UniProtKB/TrEMBL
  ENSSSCT00015071641.1 UniProtKB/TrEMBL
  ENSSSCT00030074296.1 UniProtKB/TrEMBL
  ENSSSCT00035068242.1 UniProtKB/TrEMBL
  ENSSSCT00040023553.1 UniProtKB/TrEMBL
  ENSSSCT00050106113.1 UniProtKB/TrEMBL
  ENSSSCT00055048616.1 UniProtKB/TrEMBL
  ENSSSCT00065038185.1 UniProtKB/TrEMBL
  ENSSSCT00065038188.1 UniProtKB/TrEMBL
  ENSSSCT00070049746.1 UniProtKB/TrEMBL
InterPro Mtfr1 UniProtKB/TrEMBL
NCBI Gene MTFR2 ENTREZGENE
PANTHER MITOCHONDRIAL FISSION REGULATOR 2 UniProtKB/TrEMBL
  PTHR14215 UniProtKB/TrEMBL
Pfam Mito_fiss_reg UniProtKB/TrEMBL
UniProt A0A480JPD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VKM6 ENTREZGENE
  A0A8D0XBW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ABJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Y5F9 ENTREZGENE, UniProtKB/TrEMBL
  F1S3R9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VKM6 UniProtKB/TrEMBL
VGNC ID VGNC:90449 ENTREZGENE