HMG20B (high mobility group 20B) - Rat Genome Database

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Gene: HMG20B (high mobility group 20B) Sus scrofa
Analyze
Symbol: HMG20B
Name: high mobility group 20B
RGD ID: 13959429
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN negative regulation of protein sumoylation (inferred); positive regulation of neuron differentiation (inferred); protein sumoylation (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); RASopathy (ortholog); FOUND IN nuclear body (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,093,075 - 75,098,536 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,093,071 - 75,098,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMG20BPigNeurodevelopmental Disorders  ISOHMG20B (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
HMG20BPigRASopathy  ISOHMG20B (Homo sapiens)8554872ClinVar Annotator: match by term: RASopathyClinVarPMID:23379592 more ...


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMG20BPignegative regulation of protein sumoylation acts_upstream_of_or_withinIEAUniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454150520179 EnsemblGO_REF:0000107
HMG20BPigpositive regulation of neuron differentiation acts_upstream_of_or_withinIEAUniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454150520179 EnsemblGO_REF:0000107
HMG20BPigprotein sumoylation acts_upstream_ofIEAUniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454150520179 EnsemblGO_REF:0000107
HMG20BPigregulation of gene expression involved_inIBAMGI:1914117 more ...150520179 GO_CentralGO_REF:0000033
HMG20BPigskeletal muscle cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMG20BPignuclear body located_inIEAUniProtKB:Q9P0W2 and ensembl:ENSP00000328269150520179 EnsemblGO_REF:0000107
HMG20BPignucleoplasm located_inIEAUniProtKB:Q9P0W2 and ensembl:ENSP00000328269150520179 EnsemblGO_REF:0000107
HMG20BPignucleus is_active_inIBAMGI:1914117 more ...150520179 GO_CentralGO_REF:0000033
HMG20BPignucleus located_inIEAUniRule:UR000400811150520179 UniProtGO_REF:0000104
HMG20BPignucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043

PMID:14681463   PMID:17145712   PMID:30032202  



HMG20B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,093,075 - 75,098,536 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,093,071 - 75,098,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HMG20B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,572,944 - 3,579,083 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,572,777 - 3,579,088 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,572,942 - 3,579,081 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,523,943 - 3,530,081 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,525,521 - 3,530,079NCBI
Celera193,509,760 - 3,515,897 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,338,210 - 3,344,475 (+)NCBIHuRef
CHM1_1193,572,606 - 3,578,717 (+)NCBICHM1_1
T2T-CHM13v2.0193,551,100 - 3,557,239 (+)NCBIT2T-CHM13v2.0
Hmg20b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,181,880 - 81,186,777 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,181,882 - 81,186,314 (-)EnsemblGRCm39 Ensembl
GRCm381081,346,046 - 81,350,943 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,346,048 - 81,350,480 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,808,791 - 80,813,202 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,749,181 - 80,753,539 (-)NCBIMGSCv36mm8
Celera1082,366,836 - 82,371,247 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Hmg20b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,019,670 - 9,024,382 (+)NCBIGRCr8
mRatBN7.278,368,934 - 8,373,650 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,368,990 - 8,373,640 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,254,569 - 11,259,228 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,130,054 - 13,134,714 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0710,997,679 - 11,002,358 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,238,594 - 11,243,312 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,238,630 - 11,243,310 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,405,476 - 11,410,192 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,853,290 - 9,857,970 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.179,837,939 - 9,857,556 (+)NCBI
Celera76,558,025 - 6,562,701 (+)NCBICelera
Cytogenetic Map7q11NCBI
Hmg20b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,524,874 - 5,529,926 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,515,996 - 5,530,424 (+)NCBIChiLan1.0ChiLan1.0
HMG20B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2207,970,098 - 7,976,304 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,202,040 - 7,208,250 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,598,588 - 2,604,799 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,548,451 - 3,554,725 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,548,451 - 3,554,725 (+)Ensemblpanpan1.1panPan2
HMG20B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,840,192 - 55,844,949 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,841,959 - 55,844,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,565,327 - 55,570,345 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,500,142 - 56,505,157 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,500,137 - 56,505,529 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,555,796 - 55,560,811 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,039,212 - 56,044,218 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,237,958 - 56,242,974 (-)NCBIUU_Cfam_GSD_1.0
Hmg20b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,802,182 - 215,807,432 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,027,317 - 2,032,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,027,360 - 2,032,601 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMG20B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,333,731 - 3,340,033 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,333,885 - 3,340,138 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660815,148,505 - 5,155,151 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmg20b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,278,111 - 6,283,244 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,277,743 - 6,283,154 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in HMG20B
44 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000045156   ⟹   ENSSSCP00000045693
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl275,093,075 - 75,098,536 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000057853   ⟹   ENSSSCP00000031815
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl275,093,075 - 75,098,525 (-)Ensembl
RefSeq Acc Id: XM_021084116   ⟹   XP_020939775
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1275,093,071 - 75,098,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084117   ⟹   XP_020939776
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1275,093,071 - 75,098,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084118   ⟹   XP_020939777
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1275,093,071 - 75,098,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084119   ⟹   XP_020939778
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1275,093,071 - 75,098,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084120   ⟹   XP_020939779
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1275,093,071 - 75,098,566 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020939779   ⟸   XM_021084120
- Peptide Label: isoform X5
- UniProtKB: A0A8D0N273 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939777   ⟸   XM_021084118
- Peptide Label: isoform X3
- UniProtKB: A0A8D0N273 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939778   ⟸   XM_021084119
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VUF0 (UniProtKB/TrEMBL),   A0A8D0N273 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939776   ⟸   XM_021084117
- Peptide Label: isoform X2
- UniProtKB: A0A8D0N273 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939775   ⟸   XM_021084116
- Peptide Label: isoform X1
- Sequence:
HMG box



1 to 40 of 45 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000040421 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015023864 UniProtKB/TrEMBL
  ENSSSCG00030015599 UniProtKB/TrEMBL
  ENSSSCG00035041399 UniProtKB/TrEMBL
  ENSSSCG00040058974 UniProtKB/TrEMBL
  ENSSSCG00045011891 UniProtKB/TrEMBL
  ENSSSCG00050042023 UniProtKB/TrEMBL
  ENSSSCG00055021634 UniProtKB/TrEMBL
  ENSSSCG00060016537 UniProtKB/TrEMBL
  ENSSSCG00065066107 UniProtKB/TrEMBL
  ENSSSCG00070026408 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045156 ENTREZGENE
  ENSSSCT00000045156.3 UniProtKB/TrEMBL
  ENSSSCT00000057853.3 UniProtKB/TrEMBL
  ENSSSCT00015031741.1 UniProtKB/TrEMBL
  ENSSSCT00030021612.1 UniProtKB/TrEMBL
  ENSSSCT00035055037.1 UniProtKB/TrEMBL
  ENSSSCT00040080090.1 UniProtKB/TrEMBL
  ENSSSCT00045020255.1 UniProtKB/TrEMBL
  ENSSSCT00050057096.1 UniProtKB/TrEMBL
  ENSSSCT00055042740.1 UniProtKB/TrEMBL
  ENSSSCT00060022055.1 UniProtKB/TrEMBL
  ENSSSCT00065090732.1 UniProtKB/TrEMBL
  ENSSSCT00070052923.1 UniProtKB/TrEMBL
  ENSSSCT00070052924.1 UniProtKB/TrEMBL
  ENSSSCT00070052925.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro ChromReg_NeuronalGeneExpr UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
NCBI Gene HMG20B ENTREZGENE
PANTHER HIGH MOBILITY GROUP PROTEIN 2 UniProtKB/TrEMBL
  SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY E MEMBER 1-RELATED UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
PRINTS HIGHMOBLTY12 UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A286ZJS4_PIG UniProtKB/TrEMBL
  A0A287AP69_PIG UniProtKB/TrEMBL
1 to 40 of 45 rows