ATP5F1D (ATP synthase F1 subunit delta) - Rat Genome Database

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Gene: ATP5F1D (ATP synthase F1 subunit delta) Sus scrofa
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Symbol: ATP5F1D
Name: ATP synthase F1 subunit delta
RGD ID: 13958176
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); proton-transporting ATP synthase activity, rotational mechanism (ortholog); INVOLVED IN aerobic respiration (ortholog); mitochondrial proton-transporting ATP synthase complex assembly (ortholog); response to resveratrol (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Aortic Calcification (ortholog); Cardiomegaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial proton-transporting ATP synthase complex (ortholog); mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP synthase subunit delta, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit; ATP5D; F-ATPase delta subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,216,436 - 77,222,632 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,216,430 - 77,219,301 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,781,975 - 77,784,843 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP5F1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,216,436 - 77,222,632 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,216,430 - 77,219,301 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,781,975 - 77,784,843 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,241,751 - 1,244,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,241,746 - 1,244,825 (+)EnsemblGRCh38hg38GRCh38
GRCh37191,241,750 - 1,244,824 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,192,749 - 1,195,824 (+)NCBINCBI36Build 36hg18NCBI36
Build 34191,192,748 - 1,195,823NCBI
Celera191,175,982 - 1,179,057 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,016,668 - 1,019,743 (+)NCBIHuRef
CHM1_1191,241,977 - 1,245,052 (+)NCBICHM1_1
T2T-CHM13v2.0191,210,310 - 1,213,384 (+)NCBIT2T-CHM13v2.0
Atp5f1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,974,451 - 79,981,662 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,974,466 - 79,981,652 (+)EnsemblGRCm39 Ensembl
GRCm381080,138,698 - 80,145,828 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,138,632 - 80,145,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,605,060 - 79,608,563 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,545,494 - 79,548,940 (+)NCBIMGSCv36mm8
Celera1081,157,147 - 81,160,650 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Atp5f1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,211,260 - 10,218,989 (-)NCBIGRCr8
mRatBN7.279,560,604 - 9,565,919 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,560,608 - 9,565,929 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,443,568 - 12,446,652 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,318,907 - 14,321,991 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,180,006 - 12,183,090 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,426,807 - 12,432,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,426,809 - 12,432,130 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,596,910 - 12,602,225 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,072,820 - 11,075,906 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,072,819 - 11,075,906 (-)NCBI
Celera77,736,636 - 7,739,719 (-)NCBICelera
Cytogenetic Map7q11NCBI
Atp5f1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,664,394 - 6,666,693 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,664,394 - 6,666,693 (-)NCBIChiLan1.0ChiLan1.0
ATP5F1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,584,046 - 5,587,280 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,820,655 - 4,823,889 (+)NCBINHGRI_mPanPan1
PanPan1.1191,224,055 - 1,228,283 (+)NCBIpanpan1.1PanPan1.1panPan2
ATP5F1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,547,575 - 57,550,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,547,371 - 57,549,722 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,350,373 - 57,352,904 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,290,280 - 58,292,813 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,290,281 - 58,292,374 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,346,093 - 57,348,625 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,825,374 - 57,827,905 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,028,376 - 58,030,908 (-)NCBIUU_Cfam_GSD_1.0
Atp5f1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,220,035 - 217,222,515 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588611,725 - 617,782 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588612,255 - 614,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,010,210 - 1,013,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,010,265 - 1,013,002 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660817,850,087 - 7,853,228 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5f1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,429,915 - 7,432,562 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,429,915 - 7,432,898 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP5F1D
25 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 2 2 17 2 2
Low 2 3 3 6 3 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000046776   ⟹   ENSSSCP00000036602
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl277,216,436 - 77,218,772 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087322   ⟹   ENSSSCP00000074180
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl277,216,436 - 77,222,632 (-)Ensembl
RefSeq Acc Id: XM_003122991   ⟹   XP_003123039
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1277,216,430 - 77,219,301 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003123039   ⟸   XM_003122991
- UniProtKB: A0A286ZYL7 (UniProtKB/TrEMBL),   A0A4X1VPE5 (UniProtKB/TrEMBL),   A0A8D1ULK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000036602   ⟸   ENSSSCT00000046776
RefSeq Acc Id: ENSSSCP00000074180   ⟸   ENSSSCT00000087322

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035532 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028913 UniProtKB/TrEMBL
  ENSSSCG00015081106 UniProtKB/TrEMBL
  ENSSSCG00025005859 UniProtKB/TrEMBL
  ENSSSCG00030015637 UniProtKB/TrEMBL
  ENSSSCG00035064631 UniProtKB/TrEMBL
  ENSSSCG00040054893 UniProtKB/TrEMBL
  ENSSSCG00050061900 UniProtKB/TrEMBL
  ENSSSCG00055013498 UniProtKB/TrEMBL
  ENSSSCG00060019504 UniProtKB/TrEMBL
  ENSSSCG00065003009 UniProtKB/TrEMBL
  ENSSSCG00070026718 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000046776 ENTREZGENE
  ENSSSCT00000046776.3 UniProtKB/TrEMBL
  ENSSSCT00000087322.2 UniProtKB/TrEMBL
  ENSSSCT00005045934.1 UniProtKB/TrEMBL
  ENSSSCT00015110571.1 UniProtKB/TrEMBL
  ENSSSCT00025007819.1 UniProtKB/TrEMBL
  ENSSSCT00030021672.1 UniProtKB/TrEMBL
  ENSSSCT00035086983.1 UniProtKB/TrEMBL
  ENSSSCT00040074334.1 UniProtKB/TrEMBL
  ENSSSCT00050084317.1 UniProtKB/TrEMBL
  ENSSSCT00055026577.1 UniProtKB/TrEMBL
  ENSSSCT00060026305.1 UniProtKB/TrEMBL
  ENSSSCT00065003967.1 UniProtKB/TrEMBL
  ENSSSCT00070053592.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.15.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP synthase delta/epsilon subunit, C-terminal domain UniProtKB/TrEMBL
InterPro ATP_F1_dsu/esu_C_sf UniProtKB/TrEMBL
  ATP_synth_F1_dsu/esu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP_synth_F1_dsu/esu_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPD_C_metazoa UniProtKB/TrEMBL
  ATPsynth_dsu/esu_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100523423 UniProtKB/TrEMBL
NCBI Gene ATP5F1D ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP-synt_DE_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPD_C_metazoa UniProtKB/TrEMBL
Superfamily-SCOP SSF46604 UniProtKB/TrEMBL
  SSF51344 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286ZYL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VPE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AXG3_PIG UniProtKB/TrEMBL
  A0A8D1ULK3 ENTREZGENE, UniProtKB/TrEMBL
  ATPD_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A5G2RN51 UniProtKB/TrEMBL
VGNC ID VGNC:96795 ENTREZGENE