Atp5f1d (ATP synthase F1 subunit delta)

Gene: Atp5f1d (ATP synthase F1 subunit delta) Chinchilla lanigera

Analyze

Symbol:

Atp5f1d

Name:

ATP synthase F1 subunit delta

RGD ID:

8809824

Description:

ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); proton-transporting ATP synthase activity, rotational mechanism (ortholog); INVOLVED IN aerobic respiration (ortholog); mitochondrial proton-transporting ATP synthase complex assembly (ortholog); proton motive force-driven mitochondrial ATP synthesis (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Aortic Calcification (ortholog); Cardiomegaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial proton-transporting ATP synthase complex (ortholog); mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ATP synthase subunit delta, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit; Atp5d

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	6,664,394 - 6,666,693 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	6,664,394 - 6,666,693 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

Aortic Calcification (ISO)

Cardiomegaly (ISO)

cerebral creatine deficiency syndrome (ISO)

colitis (ISO)

cyclic hematopoiesis (ISO)

genetic disease (ISO)

Intestinal Reperfusion Injury (ISO)

Left Ventricular Hypertrophy (ISO)

mitochondrial complex V (ATP synthase) deficiency nuclear type 3 (ISO)

mitochondrial complex V (ATP synthase) deficiency nuclear type 5 (ISO)

mitochondrial metabolism disease (ISO)

myocardial infarction (ISO)

Myocardial Reperfusion Injury (ISO)

obesity (ISO)

urinary bladder cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aerobic respiration (ISO)

mitochondrial proton-transporting ATP synthase complex assembly (ISO)

proton motive force-driven mitochondrial ATP synthesis (ISO)

response to resveratrol (ISO)

Cellular Component

mitochondrial inner membrane (ISO)

mitochondrial proton-transporting ATP synthase complex (ISO)

mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) (ISO)

proton-transporting ATP synthase complex, catalytic core F(1) (ISO)

Molecular Function

ATP hydrolysis activity (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

proton-transporting ATP synthase activity, rotational mechanism (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

electron transport chain pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Atp5f1d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	6,664,394 - 6,666,693 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	6,664,394 - 6,666,693 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATP5F1D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	1,241,751 - 1,244,825 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	1,241,746 - 1,244,825 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	1,241,750 - 1,244,824 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	1,192,749 - 1,195,824 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	1,192,748 - 1,195,823	NCBI
Celera	19	1,175,982 - 1,179,057 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	1,016,668 - 1,019,743 (+)	NCBI		HuRef
CHM1_1	19	1,241,977 - 1,245,052 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	1,210,310 - 1,213,384 (+)	NCBI		T2T-CHM13v2.0

Atp5f1d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	79,974,451 - 79,981,662 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	79,974,466 - 79,981,652 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	80,138,698 - 80,145,828 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	80,138,632 - 80,145,818 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	79,605,060 - 79,608,563 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	79,545,494 - 79,548,940 (+)	NCBI		MGSCv36	mm8
Celera	10	81,157,147 - 81,160,650 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Atp5f1d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	10,211,260 - 10,218,989 (-)	NCBI		GRCr8
mRatBN7.2	7	9,560,604 - 9,565,919 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	9,560,608 - 9,565,929 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	12,443,568 - 12,446,652 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	14,318,907 - 14,321,991 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	12,180,006 - 12,183,090 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	12,426,807 - 12,432,120 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	12,426,809 - 12,432,130 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	12,596,910 - 12,602,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	11,072,820 - 11,075,906 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	11,072,819 - 11,075,906 (-)	NCBI
Celera	7	7,736,636 - 7,739,719 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

ATP5F1D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	5,584,046 - 5,587,280 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	4,820,655 - 4,823,889 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	19	1,224,055 - 1,228,283 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

ATP5F1D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	57,547,575 - 57,550,110 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	57,547,371 - 57,549,722 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	57,350,373 - 57,352,904 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	58,290,280 - 58,292,813 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	58,290,281 - 58,292,374 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	57,346,093 - 57,348,625 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	57,825,374 - 57,827,905 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	58,028,376 - 58,030,908 (-)	NCBI		UU_Cfam_GSD_1.0

Atp5f1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	217,220,035 - 217,222,515 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	611,725 - 617,782 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	612,255 - 614,894 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP5F1D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	77,216,436 - 77,222,632 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	77,216,430 - 77,219,301 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	77,781,975 - 77,784,843 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP5F1D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	1,010,210 - 1,013,360 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	1,010,265 - 1,013,002 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	7,850,087 - 7,853,228 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp5f1d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	7,429,915 - 7,432,562 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	7,429,915 - 7,432,898 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005405992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005405993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01062087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01021003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000011962 ⟹ ENSCLAP00000011824

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955495	6,664,394 - 6,666,693 (-)	Ensembl

RefSeq Acc Id:

XM_005405992 ⟹ XP_005406049

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	6,664,394 - 6,666,693 (-)	NCBI

Sequence:

show sequence

CGCTCCTGGGGACTGCGCCTCCCAGAAGCCCCCGCGCGTCGTCCTCGTCGCCCTCCAGGCCGCT
TCTCCCGCCGGAGTCCGGTGTTTGCTGCCGCCCCTATTCGTCCACCGGCGCTTCCATGCTGCCC
GCCGCGCTGCTCCGCCGTCCCGGCCTGGGCCGCCTGGTCCGCCAGGTGCGCGCCTACGCCGAAG
CTGCCGCTGCCTCGGCTCCCGCCGCCGGCCCGGGCCAGATGTCCTTCACCTTCGCCTCTCCCAC
GCAGGTGTTCTTCAACGGTGCCAACGTGCGGCAGGTGGATGTTCCCACGCTGACAGGAGCCTTT
GGCATCCTGGCGTCCCACGTGCCCACTCTACAGGTCCTGCGGCCGGGACTGGTTGTAGTCCACG
CTGAAGATGGCACCACGACTAAGTACTTTGTGAGCAGTGGATCTGTCACAGTGAACGCCGACTC
CTCCGTACAGTTACTGGCTGAAGAGGCTGTGACGCTGGACATGTTGGACGTGGGGACTGCCAGG
GCAAATCTGGAGAAGGCGCAGTCGGAACTGTCCGGGACTACAGATGAGGCCGCACGTGCAGAGA
TCCAAATCCGAATCGAGGCCAACGAGGCCCTGGTGAAGGCCCTTGAGTAGGCGGTGCGTGCCCT
TCATCGCCAGGGAAACCTGAGGCCTGGCCAGGGACACCCCAGGGGCAGGTTGAGCCAGCTCCCG
GGCCCGCCCCTTTGGGGCGTGGTCTGCAAATCTTGGCTTCCAGCTTGCTGCGATAGCCACCAGG
GGGCAGTGCAGCGTGTCTTAGGCCCAGTCTTCAGGCCTGCTGGCCAAGGGGTCTGTCACCTGGC
CGCGTGTCCTGACAGCCACCCACTACCCCCTGCCCTACAGAGCCTGCATTGGAAACCTGCCTGC
TCCAGCCACCTCCACAGAAGAGCTGCCCTGGTCCCCACCCCTCCATTAAACACGGGGAATCCTA
A

hide sequence

RefSeq Acc Id:

XM_005405993 ⟹ XP_005406050

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	6,664,394 - 6,666,693 (-)	NCBI

Sequence:

show sequence

CGCTCCTGGGGACTGCGCCTCCCAGAAGCCCCCGCGCGTCGTCCTCGTCGCCCTCCAGGCCGCT
TCTCCCGCCGGAGTCCGGTGTTTGCTGCCGCCCCTATTCGTCCACCGGCGCTTCCATGCTGCCC
GCCGCGCTGCTCCGCCGTCCCGGCCTGGGCCGCCTGGTCCGCCAGGTGCGCGCCTACGCCGAAG
CTGCCGCTGCCTCGGCTCCCGCCGCCGGCCCGGGCCAGATGTCCTTCACCTTCGCCTCTCCCAC
GCAGGTGTTCTTCAACGGTGCCAACGTGCGGCAGGTGGATGTTCCCACGCTGACAGGAGCCTTT
GGCATCCTGGCGTCCCACGTGCCCACTCTACAGGTCCTGCGGCCGGGACTGGTTGTAGTCCACG
CTGAAGATGGCACCACGACTAAGTACTTTGTGAGCAGTGGATCTGTCACAGTGAACGCCGACTC
CTCCGTACAGTTACTGGCTGAAGAGGCTGTGACGCTGGACATGTTGGACGTGGGGACTGCCAGG
GCAAATCTGGAGAAGGCGCAGTCGGAACTGTCCGGGACTACAGATGAGGCCGCACGTGCAGAGA
TCCAAATCCGAATCGAGGCCAACGAGGCCCTGGTGAAGGCCCTTGAGTAGGCGAGCCTGCATTG
GAAACCTGCCTGCTCCAGCCACCTCCACAGAAGAGCTGCCCTGGTCCCCACCCCTCCATTAAAC
ACGGGGAATCCTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005406049	(Get FASTA)	NCBI Sequence Viewer
	XP_005406050	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000011824
	ENSCLAP00000011824.1

RefSeq Acc Id:	XP_005406050 ⟸ XM_005405993
- UniProtKB:	A0A8C2V9T8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPAALLRRPGLGRLVRQVRAYAEAAAASAPAAGPGQMSFTFASPTQVFFNGANVRQVDVPTLT GAFGILASHVPTLQVLRPGLVVVHAEDGTTTKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDVG TARANLEKAQSELSGTTDEAARAEIQIRIEANEALVKALE hide sequence

RefSeq Acc Id:	XP_005406049 ⟸ XM_005405992
- UniProtKB:	A0A8C2V9T8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPAALLRRPGLGRLVRQVRAYAEAAAASAPAAGPGQMSFTFASPTQVFFNGANVRQVDVPTLT GAFGILASHVPTLQVLRPGLVVVHAEDGTTTKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDVG TARANLEKAQSELSGTTDEAARAEIQIRIEANEALVKALE hide sequence

RefSeq Acc Id:

ENSCLAP00000011824 ⟸ ENSCLAT00000011962

Protein Domains

ATP synthase F1 complex delta/epsilon subunit N- F1F0-ATP synthase delta subunit C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008150	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000011962	ENTREZGENE
	ENSCLAT00000011962.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.15.10	UniProtKB/TrEMBL
	ATP synthase delta/epsilon subunit, C-terminal domain	UniProtKB/TrEMBL
InterPro	ATP_F1_dsu/esu_C_sf	UniProtKB/TrEMBL
	ATP_synth_F1_dsu/esu	UniProtKB/TrEMBL
	ATP_synth_F1_dsu/esu_N	UniProtKB/TrEMBL
	ATPD_C_metazoa	UniProtKB/TrEMBL
	ATPsynth_dsu/esu_N	UniProtKB/TrEMBL
NCBI Gene	Atp5d	ENTREZGENE
PANTHER	ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR13822	UniProtKB/TrEMBL
Pfam	ATP-synt_DE_N	UniProtKB/TrEMBL
	ATPD_C_metazoa	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46604	UniProtKB/TrEMBL
	SSF51344	UniProtKB/TrEMBL
UniProt	A0A8C2V9T8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-11-28	Atp5f1d	ATP synthase F1 subunit delta	Atp5d	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB