CXXC4 (CXXC finger protein 4) - Rat Genome Database

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Gene: CXXC4 (CXXC finger protein 4) Sus scrofa
Analyze
Symbol: CXXC4
Name: CXXC finger protein 4
RGD ID: 13945277
Description: ENCODES a protein that exhibits methyl-CpG binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN negative regulation of Wnt signaling pathway (ortholog); Wnt signaling pathway (ortholog); FOUND IN cytoplasmic vesicle (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CXXC-type zinc finger protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8117,100,633 - 117,121,034 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18117,094,442 - 117,124,943 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28125,972,942 - 125,994,265 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CXXC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8117,100,633 - 117,121,034 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18117,094,442 - 117,124,943 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28125,972,942 - 125,994,265 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXXC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384104,468,308 - 104,494,894 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4104,468,308 - 104,494,901 (-)EnsemblGRCh38hg38GRCh38
GRCh374105,389,465 - 105,416,051 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364105,612,779 - 105,631,916 (-)NCBINCBI36Build 36hg18NCBI36
Build 344105,750,948 - 105,770,071NCBI
Celera4102,691,446 - 102,710,586 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4101,124,739 - 101,151,300 (-)NCBIHuRef
CHM1_14105,366,304 - 105,392,872 (-)NCBICHM1_1
T2T-CHM13v2.04107,779,515 - 107,806,100 (-)NCBIT2T-CHM13v2.0
Cxxc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393133,938,927 - 133,967,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3133,942,245 - 133,967,922 (+)EnsemblGRCm39 Ensembl
GRCm383134,236,144 - 134,262,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3134,236,484 - 134,262,161 (+)EnsemblGRCm38mm10GRCm38
MGSCv373133,903,112 - 133,925,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363134,177,032 - 134,199,477 (+)NCBIMGSCv36mm8
Celera3140,656,700 - 140,678,444 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map362.12NCBI
Cxxc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82225,329,044 - 225,363,347 (+)NCBIGRCr8
mRatBN7.22222,664,148 - 222,689,365 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2222,664,771 - 222,689,365 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2230,361,717 - 230,386,485 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02228,261,412 - 228,286,180 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02223,126,229 - 223,150,995 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02239,414,882 - 239,439,640 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2239,415,046 - 239,439,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02257,941,014 - 257,965,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42231,705,560 - 231,722,975 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12231,692,299 - 231,709,701 (+)NCBI
Celera2214,887,130 - 214,911,824 (+)NCBICelera
Cytogenetic Map2q43NCBI
Cxxc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554964,523,027 - 4,546,671 (+)NCBIChiLan1.0ChiLan1.0
CXXC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23102,551,565 - 102,578,300 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14102,843,934 - 102,870,658 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0496,931,261 - 96,957,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14107,568,738 - 107,627,055 (-)NCBIpanpan1.1PanPan1.1panPan2
CXXC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13225,469,736 - 25,492,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3225,473,758 - 25,492,262 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3216,532,739 - 16,555,823 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03225,679,514 - 25,701,609 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3225,681,895 - 25,712,769 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13225,700,838 - 25,723,930 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03225,442,770 - 25,465,858 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03214,394,495 - 14,417,610 (+)NCBIUU_Cfam_GSD_1.0
LOC101958361
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530115,754,153 - 15,757,349 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367521,167,273 - 1,189,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367521,163,832 - 1,186,227 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXXC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1752,531,641 - 52,551,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603731,119,047 - 31,145,548 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxxc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248304,092,850 - 4,115,959 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248304,090,207 - 4,116,080 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CXXC4
390 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 1 23 3 2 4 2 23 1 5 1

Sequence


Ensembl Acc Id: ENSSSCT00000024172   ⟹   ENSSSCP00000022187
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8117,097,853 - 117,121,310 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000094218   ⟹   ENSSSCP00000077428
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8117,100,633 - 117,121,034 (+)Ensembl
RefSeq Acc Id: XM_003129280   ⟹   XP_003129328
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18117,099,833 - 117,124,943 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100709   ⟹   XP_020956368
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18117,097,417 - 117,124,943 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100710   ⟹   XP_020956369
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18117,097,741 - 117,124,943 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100711   ⟹   XP_020956370
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18117,094,442 - 117,124,943 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100712   ⟹   XP_020956371
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18117,097,417 - 117,124,943 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020956370   ⟸   XM_021100711
- UniProtKB: A0A8D1IY01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956368   ⟸   XM_021100709
- UniProtKB: A0A8D1IY01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956371   ⟸   XM_021100712
- UniProtKB: A0A8D1IY01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956369   ⟸   XM_021100710
- UniProtKB: A0A8D1IY01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003129328   ⟸   XM_003129280
- UniProtKB: A0A8D1IY01 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000022187   ⟸   ENSSSCT00000024172
Ensembl Acc Id: ENSSSCP00000077428   ⟸   ENSSSCT00000094218
Protein Domains
CXXC-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025621 Ensembl
  ENSSSCG00000062602 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00030004697 UniProtKB/TrEMBL
  ENSSSCG00035012187 UniProtKB/TrEMBL
  ENSSSCG00045032807 UniProtKB/TrEMBL
  ENSSSCG00065034419 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000094218.1 UniProtKB/TrEMBL
  ENSSSCT00030006322.1 UniProtKB/TrEMBL
  ENSSSCT00035015323.1 UniProtKB/TrEMBL
  ENSSSCT00045055986.1 UniProtKB/TrEMBL
  ENSSSCT00065046833.1 UniProtKB/TrEMBL
InterPro CXXC4/CXXC5 UniProtKB/TrEMBL
  Znf_CXXC UniProtKB/TrEMBL
NCBI Gene CXXC4 ENTREZGENE
PANTHER CXXC FINGER PROTEIN 4 UniProtKB/TrEMBL
  PTHR13419 UniProtKB/TrEMBL
Pfam zf-CXXC UniProtKB/TrEMBL
PROSITE ZF_CXXC UniProtKB/TrEMBL
UniProt A0A8D1IY01 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FDP0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87117 ENTREZGENE