CXXC4 (CXXC finger protein 4) - Rat Genome Database

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Gene: CXXC4 (CXXC finger protein 4) Pan paniscus
Analyze
Symbol: CXXC4
Name: CXXC finger protein 4
RGD ID: 11719871
Description: ENCODES a protein that exhibits methyl-CpG binding (ortholog); PDZ domain binding (ortholog); zinc ion binding (ortholog); INVOLVED IN negative regulation of Wnt signaling pathway (ortholog); Wnt signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CXXC-type zinc finger protein 4; LOC103783536; uncharacterized LOC103783536; uncharacterized protein LOC103783536
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23102,551,565 - 102,578,300 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14102,843,934 - 102,870,658 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0496,931,261 - 96,957,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14107,568,738 - 107,627,055 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CXXC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23102,551,565 - 102,578,300 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14102,843,934 - 102,870,658 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0496,931,261 - 96,957,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14107,568,738 - 107,627,055 (-)NCBIpanpan1.1PanPan1.1panPan2
CXXC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384104,468,308 - 104,494,894 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4104,468,308 - 104,494,901 (-)EnsemblGRCh38hg38GRCh38
GRCh374105,389,465 - 105,416,051 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364105,612,779 - 105,631,916 (-)NCBINCBI36Build 36hg18NCBI36
Build 344105,750,948 - 105,770,071NCBI
Celera4102,691,446 - 102,710,586 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4101,124,739 - 101,151,300 (-)NCBIHuRef
CHM1_14105,366,304 - 105,392,872 (-)NCBICHM1_1
T2T-CHM13v2.04107,779,515 - 107,806,100 (-)NCBIT2T-CHM13v2.0
Cxxc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393133,938,927 - 133,967,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3133,942,245 - 133,967,922 (+)EnsemblGRCm39 Ensembl
GRCm383134,236,144 - 134,262,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3134,236,484 - 134,262,161 (+)EnsemblGRCm38mm10GRCm38
MGSCv373133,903,112 - 133,925,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363134,177,032 - 134,199,477 (+)NCBIMGSCv36mm8
Celera3140,656,700 - 140,678,444 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map362.12NCBI
Cxxc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82225,329,044 - 225,363,347 (+)NCBIGRCr8
mRatBN7.22222,664,148 - 222,689,365 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2222,664,771 - 222,689,365 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2230,361,717 - 230,386,485 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02228,261,412 - 228,286,180 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02223,126,229 - 223,150,995 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02239,414,882 - 239,439,640 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2239,415,046 - 239,439,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02257,941,014 - 257,965,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42231,705,560 - 231,722,975 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12231,692,299 - 231,709,701 (+)NCBI
Celera2214,887,130 - 214,911,824 (+)NCBICelera
Cytogenetic Map2q43NCBI
Cxxc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554964,523,027 - 4,546,671 (+)NCBIChiLan1.0ChiLan1.0
CXXC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13225,469,736 - 25,492,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3225,473,758 - 25,492,262 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3216,532,739 - 16,555,823 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03225,679,514 - 25,701,609 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3225,681,895 - 25,712,769 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13225,700,838 - 25,723,930 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03225,442,770 - 25,465,858 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03214,394,495 - 14,417,610 (+)NCBIUU_Cfam_GSD_1.0
LOC101958361
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530115,754,153 - 15,757,349 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367521,167,273 - 1,189,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367521,163,832 - 1,186,227 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXXC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8117,100,633 - 117,121,034 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18117,094,442 - 117,124,943 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28125,972,942 - 125,994,265 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXXC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1752,531,641 - 52,551,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603731,119,047 - 31,145,548 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxxc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248304,092,850 - 4,115,959 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248304,090,207 - 4,116,080 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034958964   ⟹   XP_034814855
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23102,551,565 - 102,578,300 (-)NCBI
NHGRI_mPanPan14102,843,934 - 102,870,658 (-)NCBI
Mhudiblu_PPA_v0496,931,261 - 96,957,973 (-)NCBI
RefSeq Acc Id: XM_034958965   ⟹   XP_034814856
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23102,551,565 - 102,578,300 (-)NCBI
NHGRI_mPanPan14102,843,934 - 102,870,658 (-)NCBI
Mhudiblu_PPA_v0496,931,261 - 96,957,973 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034814855 (Get FASTA)   NCBI Sequence Viewer  
  XP_034814856 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034814856   ⟸   XM_034958965
RefSeq Acc Id: XP_034814855   ⟸   XM_034958964


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC103783536 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 CXXC4  CXXC finger protein 4  LOC103783536  uncharacterized LOC103783536  Symbol and/or name change 5135510 APPROVED
2020-06-11 LOC103783536  uncharacterized LOC103783536  CXXC4  CXXC finger protein 4  Data merged from RGD:11798548 737654 PROVISIONAL