LOC102161654 (tyrosine-protein phosphatase non-receptor type substrate 1) - Rat Genome Database

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Gene: LOC102161654 (tyrosine-protein phosphatase non-receptor type substrate 1) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC102161654
Name: tyrosine-protein phosphatase non-receptor type substrate 1
RGD ID: 13935906
Description: FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal-regulatory protein beta 1; signal-regulatory protein beta-1; SIRPB1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11733,735,808 - 33,756,077 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21737,981,502 - 38,001,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC102161654
936 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 14 3 2 5 14 12 14 3 5 3

Sequence


RefSeq Acc Id: XM_013985182   ⟹   XP_013840636
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11733,735,808 - 33,751,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013985183   ⟹   XP_013840637
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11733,735,808 - 33,756,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013985184   ⟹   XP_013840638
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11733,735,809 - 33,756,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013985185   ⟹   XP_013840639
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11733,735,809 - 33,756,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077522   ⟹   XP_020933181
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11733,735,808 - 33,751,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077523   ⟹   XP_020933182
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11733,735,808 - 33,756,077 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013840637   ⟸   XM_013985183
- Peptide Label: isoform X3
- UniProtKB: A0A8D1J7F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933182   ⟸   XM_021077523
- Peptide Label: isoform X4
- UniProtKB: I3L932 (UniProtKB/TrEMBL),   A0A8D1J7F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933181   ⟸   XM_021077522
- Peptide Label: isoform X1
- UniProtKB: A0A8D1QDA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840636   ⟸   XM_013985182
- Peptide Label: isoform X2
- UniProtKB: A0A8D1QDA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840638   ⟸   XM_013985184
- Peptide Label: isoform X5
- UniProtKB: A0A8D0ZHY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840639   ⟸   XM_013985185
- Peptide Label: isoform X6
- UniProtKB: A0A0B8RZ60 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027665 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030030592 UniProtKB/TrEMBL
  ENSSSCG00035032100 UniProtKB/TrEMBL
  ENSSSCG00045035086 UniProtKB/TrEMBL
  ENSSSCG00055010148 UniProtKB/TrEMBL
  ENSSSCG00070001585 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000033347 ENTREZGENE
  ENSSSCT00000033347.4 UniProtKB/TrEMBL
  ENSSSCT00030042457.1 UniProtKB/TrEMBL
  ENSSSCT00035042522.1 UniProtKB/TrEMBL
  ENSSSCT00045060234.1 UniProtKB/TrEMBL
  ENSSSCT00045060298.1 UniProtKB/TrEMBL
  ENSSSCT00045060353.1 UniProtKB/TrEMBL
  ENSSSCT00045060429.1 UniProtKB/TrEMBL
  ENSSSCT00045060492.1 UniProtKB/TrEMBL
  ENSSSCT00055019831.1 UniProtKB/TrEMBL
  ENSSSCT00055019885.1 UniProtKB/TrEMBL
  ENSSSCT00055019906.1 UniProtKB/TrEMBL
  ENSSSCT00070002952.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_CS_Receptor UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene LOC102161654 ENTREZGENE
PANTHER SIGNAL-REGULATORY PROTEIN BETA UniProtKB/TrEMBL
  SIGNAL-REGULATORY PROTEIN BETA-1 UniProtKB/TrEMBL
  SIGNAL-REGULATORY PROTEIN BETA-1-LIKE UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0B8RZ60 ENTREZGENE
  A0A4X1SJ44_PIG UniProtKB/TrEMBL
  A0A8D0WGA2_PIG UniProtKB/TrEMBL
  A0A8D0ZHY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IZT0_PIG UniProtKB/TrEMBL
  A0A8D1IZX3_PIG UniProtKB/TrEMBL
  A0A8D1J5N9_PIG UniProtKB/TrEMBL
  A0A8D1J7F4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L8I5_PIG UniProtKB/TrEMBL
  A0A8D1Q5K5_PIG UniProtKB/TrEMBL
  A0A8D1QD47_PIG UniProtKB/TrEMBL
  A0A8D1QDA1 ENTREZGENE, UniProtKB/TrEMBL
  I3L932 ENTREZGENE, UniProtKB/TrEMBL