LOXL2 (lysyl oxidase like 2) - Rat Genome Database

Name: LOXL2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: LOXL2 (lysyl oxidase like 2) Sus scrofa

Analyze

Symbol:

LOXL2

Name:

lysyl oxidase like 2

RGD ID:

13930235

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); copper ion binding (inferred); metal ion binding (inferred); INVOLVED IN peptidyl-lysine oxidation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Breast Neoplasms (ortholog); Conotruncal Cardiac Defects (ortholog); FOUND IN basement membrane (inferred); chromatin (inferred); chromosome (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysyl oxidase homolog 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LOXL2 (lysyl oxidase like 2)	HGNC	Ensembl, NCBI, OrthoDB
Mus musculus (house mouse):	Loxl2 (lysyl oxidase-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Loxl2 (lysyl oxidase-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Loxl2 (lysyl oxidase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOXL2 (lysyl oxidase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOXL2 (lysyl oxidase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Loxl2 (lysyl oxidase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOXL2 (lysyl oxidase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Loxl2 (lysyl oxidase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	7,435,867 - 7,540,704 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	7,435,861 - 7,540,699 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Breast Neoplasms (ISO)

Conotruncal Cardiac Defects (ISO)

esophagus squamous cell carcinoma (ISO)

Experimental Liver Cirrhosis (ISO)

hepatitis B (ISO)

hepatitis C (ISO)

Neoplasm Invasiveness (ISO)

Neoplastic Cell Transformation (ISO)

primary biliary cholangitis (ISO)

Wilson disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

collagen fibril organization (IBA,IEA)

endothelial cell migration (IEA)

endothelial cell proliferation (IEA)

epithelial to mesenchymal transition (IEA)

heterochromatin organization (IEA)

negative regulation of DNA-templated transcription (IEA)

negative regulation of stem cell population maintenance (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

peptidyl-lysine oxidation (ISO)

positive regulation of chondrocyte differentiation (IEA)

positive regulation of epithelial to mesenchymal transition (IEA)

protein modification process (IEA)

response to copper ion (IEA)

response to hypoxia (IEA)

sprouting angiogenesis (IBA,IEA)

Cellular Component

basement membrane (IEA)

chromatin (IEA)

chromosome (IEA)

collagen-containing extracellular matrix (IBA)

endoplasmic reticulum (IEA)

extracellular region (IEA)

extracellular space (IBA,IEA)

membrane (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

calcium ion binding (IEA)

copper ion binding (IEA)

metal ion binding (IEA)

oligosaccharide binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor (IEA)

protein binding (ISO)

protein-lysine 6-oxidase activity (IBA,IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOXL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	7,435,867 - 7,540,704 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	7,435,861 - 7,540,699 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOXL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	23,296,897 - 23,404,120 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	23,296,897 - 23,425,328 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	23,154,410 - 23,261,633 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	23,210,355 - 23,317,667 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	23,210,640 - 23,317,575	NCBI
Celera	8	22,116,981 - 22,224,289 (-)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	21,700,441 - 21,807,111 (-)	NCBI		HuRef
CHM1_1	8	23,356,541 - 23,463,832 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	23,571,770 - 23,679,001 (-)	NCBI		T2T-CHM13v2.0

Loxl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	69,846,085 - 69,933,283 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	69,846,517 - 69,933,283 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	69,608,692 - 69,695,834 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	69,609,068 - 69,695,834 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	70,009,283 - 70,095,641 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	68,344,556 - 68,428,775 (+)	NCBI		MGSCv36	mm8
Celera	14	67,164,771 - 67,231,456 (+)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.06	NCBI

Loxl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,091,547 - 51,182,843 (+)	NCBI		GRCr8
mRatBN7.2	15	44,683,449 - 44,773,067 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	44,683,880 - 44,773,067 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	48,801,847 - 48,888,730 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	49,913,342 - 50,000,223 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	46,772,671 - 46,859,556 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	51,276,022 - 51,365,238 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	51,303,909 - 51,365,234 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,005,461 - 55,092,980 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	49,982,103 - 50,068,902 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	50,024,097 - 50,084,571 (+)	NCBI
Celera	15	44,366,507 - 44,453,187 (+)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

Loxl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	46,504,440 - 46,584,016 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	46,503,226 - 46,583,807 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOXL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	41,802,508 - 41,909,114 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	17,529,707 - 17,636,058 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	22,547,303 - 22,653,676 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	19,483,331 - 19,589,522 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	19,483,335 - 19,589,522 (-)	Ensembl	panpan1.1		panPan2

LOXL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	34,095,858 - 34,186,775 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	34,126,335 - 34,185,969 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	34,684,511 - 34,775,173 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	34,303,470 - 34,394,384 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	34,303,481 - 34,394,388 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	34,249,922 - 34,341,273 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	34,104,318 - 34,195,732 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	34,259,681 - 34,351,266 (+)	NCBI		UU_Cfam_GSD_1.0

Loxl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	11,704,822 - 11,789,837 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	6,781,321 - 6,865,768 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	6,781,563 - 6,865,662 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOXL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	21,416,821 - 21,516,923 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	21,416,787 - 21,516,854 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	20,707,763 - 20,805,731 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Loxl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	18,568,607 - 18,621,785 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	18,567,367 - 18,644,528 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LOXL2
3381 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	10	3	5	14	12	10	3	6	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021074114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021074115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK350047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01015426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000046243 ⟹ ENSSSCP00000045152

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	7,435,867 - 7,540,704 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000079299 ⟹ ENSSSCP00000065367

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	7,440,991 - 7,540,702 (-)	Ensembl

RefSeq Acc Id:

XM_021074114 ⟹ XP_020929773

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	7,435,861 - 7,540,699 (-)	NCBI

Sequence:

show sequence

GGCTCCGGAAACCTGGGCGAGAAGAGCCTGGGAAGGGCTGCCCCATTGGCGCGCGGCTTCCCCG
CGGAACAAAAGGGGCAGGAGGCCGGGCCTGCGGCGGTGGCCGCCTTTAGGGAAGGGGGTGGGTC
CGGGGAGGGTTTGCTGTGGGGCGCTGGTTAAAAGTACCGGGAAAAGCGCTACTCCGGCGCTCGG
CTTCCTAAAACTGGGAGCTCGCTTTTTCCAACGGCCGGAAGTTTCGGCTCGTCTGCTCTGTTCG
GGTAGTGGGCTCCGCGGCGCCGGGCGCAGGAGAGGGGCCGCTGTGGAAAGCCTGGCCCCAGCCG
AGCCAGCGCGCACTTCTGCTGCCAAGAAACAGCGGTCAGTTGGTCCTGGGCACCAAGCGCCCCC
GTCCGTCAGGTCCTCCAGCCTGAGGACAGGGATGGAGAGGCGTGCAGGCTCCTGCCTCTGCAGC
TGTCTGGCTGTGCTTGCCCTGCTGCCCGCCCTGAGCTTGGCGCAGTACGAGAGCTGGCCCCACT
ACCCGGAGTACTTCCAGCAGCCCGCCCCCGAGTACCACCGGCCTCAGGCACCCTCCGACGTGGT
CAAGATCCAGCTGCGCCTGGCGGGCCAGAAGAGGAAGCACAGCGAGGGCCGGCTGGAGGTGTAC
TACAATGGCCAGTGGGGCACCGTGTGCGACGACGACTTCTCCATCCATGCTGCCCACGTTGTCT
GCCGGGAGCTGGGATACGTGGAGGCCAAGTCCTGGACTGCCAGCTCCTCCTATGGCAAGGGGGA
AGGCCCCATCTGGTTGGACAATGTCTACTGTACCGGCCAAGAGGCGACCCTCGCAGCCTGCTCC
TCCAATGGCTGGGGTGTCACCGACTGCAAGCACACAGAAGATGTGGGTGTGGTGTGCAGTGACA
AGAGGATTCCTGGGTTCAAGTTTGACAATTCGCTGATCAACAACATAGAGAACATGAACATCCA
GGTGGAAGACATCCGGATCCGAGCCATCCTCTCCGCCTACCGCAAGCGCACCCCGGTGACCGAG
GGCTACGTGGAGGTCAAGGAGGGCAAGACCTGGAAGCAGATCTGTGACAAGCACTGGACGGCCA
AGAACTCCCGCGTGGTCTGTGGCATGTTTGGCTTCCCTGGGGAGAAGACGTACAACGCCAAAGT
GTACAAGATGTTTGCCGCCCGCAAGAAGCAGCGCTACTGGCCGTTCTCCATGGACTGCACAGGC
ACAGAGGCCCACATCTCCAGCTGCAAGCTGGGCCCTCAAGTGTCGCTGGACCCCGTTAAGAACG
TCACCTGTGAGAATGGGTTGCCAGCTGTGGTGAGCTGTGTGCCTGGCCAGGTCTTCAGTGCTGA
TGGACCCTCGAGGTTCCGGAAAGCCTACAAGCCGGAGCAACCCCTGGTGCGGTTGAGAGGCGGG
GCCAACGTCGGGGAGGGCCGCGTGGAGGTGCTCAAGAACGGAGAGTGGGGTACCGTCTGCGACG
ACAAGTGGGACCTGGTGTCTGCCAGCGTGGTCTGCAGAGAACTGGGCTTCGGGAGTGCCAAAGA
GGCCATCACAGGCTCCCGGCTGGGGCAAGGGATAGGACCCATCCACCTCAATGAAATCCAGTGC
ACGGGGAATGAGAAGTCCATCATAGACTGCAAATTCAATGCAGAGTCTCAGGGCTGCAACCACG
AGGAAGATGCTGGTGTGAGATGTAACATCCCCGCTATGGGCTTCCAGAAAAAGCTGCGCCTGAA
CGGGGGCCGAAATCCCTACGAGGGCCGCGTGGAGGTGCTGGTGGAGAGGAACGGGTCCCTCGTG
TGGGGGACAGTGTGCGGCGAAAACTGGGGCATCGTGGAGGCCATGGTGGTCTGCCGGCAGCTGG
GCCTGGGCTTCGCCAGCAACGCCTTCCAGGAGACCTGGTATTGGCACGGAAATGCCCACAACAA
GGTGGTCATGAGCGGGGTGAAGTGCTCAGGAACGGAGCTGTCCCTGGCGCACTGTCGCCACGAC
GGAGAGGACGTGGCCTGCCCCCAGGGTGGGGTGCAGTATGGGGCCGGAGTCGCCTGCTCAGAAA
CCGCCCCAGACCTGGTCCTCAACGCAGAGATTGTGCAGCAGAGCACCTACCTGGAGGACCGGCC
CATGTTCATGCTGCAGTGTGCCATGGAGGAGAACTGCCTCGCCGCCTCGGCCGCCCAGACCAAC
CCCACCACCGGCTACCGGAGGCTCCTGCGCTTCTCCTCCCAGATCCACAACAACGGCCAGTCCG
ACTTCCGACCCAAGAACGGCCGCCACGCGTGGATCTGGCATGACTGCCATAGGCACTACCACAG
CATGGAGGTGTTCACCCACTACGACCTGCTAAACCTCAATGGGACCAAGGTGGCAGAGGGCCAC
AAGGCCAGCTTCTGCTTGGAGGACACGGAATGTGAAGGAGACATCCAGAAAAGTTATGAGTGTG
CCAACTTCGGCGAGCAGGGCATCACCATGGGCTGCTGGGACATGTACCGCCATGACATTGACTG
CCAGTGGGTTGACATCACAGACGTGCCTCCTGGAGACTACCTGTTCCAGGTTGTCATTAACCCC
AACTACGAGGTGGCAGAGTCTGACTACACCAACAACATCATGAAGTGCAGGACCCGCTACGACG
GCCACCGCATCTGGATGTACAACTGCCACATAGGTGGTTCCTTCAGCGAAGAGACAGAGAAAAA
GTTTGAACACTTCAGTGGACTCATAAATAACCAGCTCACCTCGCGGTAAAGGAGCCATGTGGTC
GCTCCCTGGCTTCAGGCCGCAGGGCGTCTTCCCCAACAACTGCAGCCTGCCCGGCTCCCTTCAC
CCAGCCCGTCTCGACCCCCTGCAGCCACAGCCAAGCTCAGGAGGACAACGAGGAAGGCGTGTTC
CTTACGCAGCCTGGGAAGGCCTCTGGGGGTGGGGCTTGTCCACAGGGCTGTGGGAGCAGCGCCA
ACCAAGAGTCATCTTTCCAGGGCCGCAGGTGCACAGGCTGTCACCAACCTGTCCCATCCCAAAC
ACGTCCACTCCCAGTCTGACACCATGCACTCAGCTCACCCCAGGTAACATGGGGTCATTTTCTT
CTCAGTTACACGTTGGCAACCTGAGTTATCAAACCAAGGAGGTCAGGCTGAACCCAGTTTCTCC
ACCTCTTAGGTCATTTCCAGCCAACCTGAATACCTAGACTTCTCTTCCAACTAAACCAACTGCC
TCTACTCTGTTCTATTCTATCGACACATATAAATAATGCTGCCACGCGTCTTCTGATTCGGTGA
GCTCAGAGTTGGTGCTTCTCTTTCCCCCAGCCCCCCACACCCCTGCATCCTCTCGTTTTTCAAG
ATACTATTATTACCTTTTCACAGACTTTGAAACACCAGGTAACTTAGTGGCATTTAATATTGGG
CATCTGGGCCTTTGAAAGCATAGCTCAAAAGAAAACCCAACCCACCTGTGTAAGTGACTCATCT
TTCTGTCCTTCCAGTGCTGTGGGTAATTGATTCAGCGGTGCTATAACCAGGGTCCTGGGTGATG
AGGACACTCACCCATCGCCATGTGTCATCACAGACACTTTACATACTTGAAACTTGGAATAAAA
GATTTACAACCTG

hide sequence

RefSeq Acc Id:

XM_021074115 ⟹ XP_020929774

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	7,435,861 - 7,540,575 (-)	NCBI

Sequence:

show sequence

GGTCCGGGGAGGGTTTGCTGTGGGGCGCTGGTTAAAAGTACCGGGAAAAGCGCTACTCCGGCGC
TCGGCTTCCTAAAACTGGGAGCTCGCTTTTTCCAACGGCCGGAAGTTTCGGCTCGTCTGCTCTG
TTCGGGTAGTGGGCTCCGCGGCGCCGGGCGCAGGAGAGGGGCCGCTGTGGAAAGCCTGGCCCCA
GCCGAGCCAGCGCGCACTTCTGCTGCCAAGGCGGACTCACCCAGCCCCACCTCGCCTGAACTCT
GCGAGCCGACGCAGCAGGCGCGCCCCAGGGAGCAGGGCGCTTGGTTCGTTGCTCGCCAGGGGCT
CCTGCGACCAGGCAGGATAGAGCCAGGAGAGACTCGGTGCGCGGAAACAGCGGTCAGTTGGTCC
TGGGCACCAAGCGCCCCCGTCCGTCAGGTCCTCCAGCCTGAGGACAGGGATGGAGAGGCGTGCA
GGCTCCTGCCTCTGCAGCTGTCTGGCTGTGCTTGCCCTGCTGCCCGCCCTGAGCTTGGCGCAGT
ACGAGAGCTGGCCCCACTACCCGGAGTACTTCCAGCAGCCCGCCCCCGAGTACCACCGGCCTCA
GGCACCCTCCGACGTGGTCAAGATCCAGCTGCGCCTGGCGGGCCAGAAGAGGAAGCACAGCGAG
GGCCGGCTGGAGGTGTACTACAATGGCCAGTGGGGCACCGTGTGCGACGACGACTTCTCCATCC
ATGCTGCCCACGTTGTCTGCCGGGAGCTGGGATACGTGGAGGCCAAGTCCTGGACTGCCAGCTC
CTCCTATGGCAAGGGGGAAGGCCCCATCTGGTTGGACAATGTCTACTGTACCGGCCAAGAGGCG
ACCCTCGCAGCCTGCTCCTCCAATGGCTGGGGTGTCACCGACTGCAAGCACACAGAAGATGTGG
GTGTGGTGTGCAGTGACAAGAGGATTCCTGGGTTCAAGTTTGACAATTCGCTGATCAACAACAT
AGAGAACATGAACATCCAGGTGGAAGACATCCGGATCCGAGCCATCCTCTCCGCCTACCGCAAG
CGCACCCCGGTGACCGAGGGCTACGTGGAGGTCAAGGAGGGCAAGACCTGGAAGCAGATCTGTG
ACAAGCACTGGACGGCCAAGAACTCCCGCGTGGTCTGTGGCATGTTTGGCTTCCCTGGGGAGAA
GACGTACAACGCCAAAGTGTACAAGATGTTTGCCGCCCGCAAGAAGCAGCGCTACTGGCCGTTC
TCCATGGACTGCACAGGCACAGAGGCCCACATCTCCAGCTGCAAGCTGGGCCCTCAAGTGTCGC
TGGACCCCGTTAAGAACGTCACCTGTGAGAATGGGTTGCCAGCTGTGGTGAGCTGTGTGCCTGG
CCAGGTCTTCAGTGCTGATGGACCCTCGAGGTTCCGGAAAGCCTACAAGCCGGAGCAACCCCTG
GTGCGGTTGAGAGGCGGGGCCAACGTCGGGGAGGGCCGCGTGGAGGTGCTCAAGAACGGAGAGT
GGGGTACCGTCTGCGACGACAAGTGGGACCTGGTGTCTGCCAGCGTGGTCTGCAGAGAACTGGG
CTTCGGGAGTGCCAAAGAGGCCATCACAGGCTCCCGGCTGGGGCAAGGGATAGGACCCATCCAC
CTCAATGAAATCCAGTGCACGGGGAATGAGAAGTCCATCATAGACTGCAAATTCAATGCAGAGT
CTCAGGGCTGCAACCACGAGGAAGATGCTGGTGTGAGATGTAACATCCCCGCTATGGGCTTCCA
GAAAAAGCTGCGCCTGAACGGGGGCCGAAATCCCTACGAGGGCCGCGTGGAGGTGCTGGTGGAG
AGGAACGGGTCCCTCGTGTGGGGGACAGTGTGCGGCGAAAACTGGGGCATCGTGGAGGCCATGG
TGGTCTGCCGGCAGCTGGGCCTGGGCTTCGCCAGCAACGCCTTCCAGGAGACCTGGTATTGGCA
CGGAAATGCCCACAACAAGGTGGTCATGAGCGGGGTGAAGTGCTCAGGAACGGAGCTGTCCCTG
GCGCACTGTCGCCACGACGGAGAGGACGTGGCCTGCCCCCAGGGTGGGGTGCAGTATGGGGCCG
GAGTCGCCTGCTCAGAAACCGCCCCAGACCTGGTCCTCAACGCAGAGATTGTGCAGCAGAGCAC
CTACCTGGAGGACCGGCCCATGTTCATGCTGCAGTGTGCCATGGAGGAGAACTGCCTCGCCGCC
TCGGCCGCCCAGACCAACCCCACCACCGGCTACCGGAGGCTCCTGCGCTTCTCCTCCCAGATCC
ACAACAACGGCCAGTCCGACTTCCGACCCAAGAACGGCCGCCACGCGTGGATCTGGCATGACTG
CCATAGGCACTACCACAGCATGGAGGTGTTCACCCACTACGACCTGCTAAACCTCAATGGGACC
AAGGTGGCAGAGGGCCACAAGGCCAGCTTCTGCTTGGAGGACACGGAATGTGAAGGAGACATCC
AGAAAAGTTATGAGTGTGCCAACTTCGGCGAGCAGGGCATCACCATGGGCTGCTGGGACATGTA
CCGCCATGACATTGACTGCCAGTGGGTTGACATCACAGACGTGCCTCCTGGAGACTACCTGTTC
CAGGTTGTCATTAACCCCAACTACGAGGTGGCAGAGTCTGACTACACCAACAACATCATGAAGT
GCAGGACCCGCTACGACGGCCACCGCATCTGGATGTACAACTGCCACATAGGTGGTTCCTTCAG
CGAAGAGACAGAGAAAAAGTTTGAACACTTCAGTGGACTCATAAATAACCAGCTCACCTCGCGG
TAAAGGAGCCATGTGGTCGCTCCCTGGCTTCAGGCCGCAGGGCGTCTTCCCCAACAACTGCAGC
CTGCCCGGCTCCCTTCACCCAGCCCGTCTCGACCCCCTGCAGCCACAGCCAAGCTCAGGAGGAC
AACGAGGAAGGCGTGTTCCTTACGCAGCCTGGGAAGGCCTCTGGGGGTGGGGCTTGTCCACAGG
GCTGTGGGAGCAGCGCCAACCAAGAGTCATCTTTCCAGGGCCGCAGGTGCACAGGCTGTCACCA
ACCTGTCCCATCCCAAACACGTCCACTCCCAGTCTGACACCATGCACTCAGCTCACCCCAGGTA
ACATGGGGTCATTTTCTTCTCAGTTACACGTTGGCAACCTGAGTTATCAAACCAAGGAGGTCAG
GCTGAACCCAGTTTCTCCACCTCTTAGGTCATTTCCAGCCAACCTGAATACCTAGACTTCTCTT
CCAACTAAACCAACTGCCTCTACTCTGTTCTATTCTATCGACACATATAAATAATGCTGCCACG
CGTCTTCTGATTCGGTGAGCTCAGAGTTGGTGCTTCTCTTTCCCCCAGCCCCCCACACCCCTGC
ATCCTCTCGTTTTTCAAGATACTATTATTACCTTTTCACAGACTTTGAAACACCAGGTAACTTA
GTGGCATTTAATATTGGGCATCTGGGCCTTTGAAAGCATAGCTCAAAAGAAAACCCAACCCACC
TGTGTAAGTGACTCATCTTTCTGTCCTTCCAGTGCTGTGGGTAATTGATTCAGCGGTGCTATAA
CCAGGGTCCTGGGTGATGAGGACACTCACCCATCGCCATGTGTCATCACAGACACTTTACATAC
TTGAAACTTGGAATAAAAGATTTACAACCTG

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Protein Sequences


Protein RefSeqs	XP_020929773	(Get FASTA)	NCBI Sequence Viewer
	XP_020929774	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000045152
	ENSSSCP00000045152.2
	ENSSSCP00000065367.1
	ENSSSCP00015037696.1
	ENSSSCP00070039952.1
	ENSSSCP00070039960.1

RefSeq Acc Id:

XP_020929773 ⟸ XM_021074114

- UniProtKB:

A0A8D0UAH5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERRAGSCLCSCLAVLALLPALSLAQYESWPHYPEYFQQPAPEYHRPQAPSDVVKIQLRLAGQK
RKHSEGRLEVYYNGQWGTVCDDDFSIHAAHVVCRELGYVEAKSWTASSSYGKGEGPIWLDNVYC
TGQEATLAACSSNGWGVTDCKHTEDVGVVCSDKRIPGFKFDNSLINNIENMNIQVEDIRIRAIL
SAYRKRTPVTEGYVEVKEGKTWKQICDKHWTAKNSRVVCGMFGFPGEKTYNAKVYKMFAARKKQ
RYWPFSMDCTGTEAHISSCKLGPQVSLDPVKNVTCENGLPAVVSCVPGQVFSADGPSRFRKAYK
PEQPLVRLRGGANVGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGSAKEAITGSRLGQG
IGPIHLNEIQCTGNEKSIIDCKFNAESQGCNHEEDAGVRCNIPAMGFQKKLRLNGGRNPYEGRV
EVLVERNGSLVWGTVCGENWGIVEAMVVCRQLGLGFASNAFQETWYWHGNAHNKVVMSGVKCSG
TELSLAHCRHDGEDVACPQGGVQYGAGVACSETAPDLVLNAEIVQQSTYLEDRPMFMLQCAMEE
NCLAASAAQTNPTTGYRRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLL
NLNGTKVAEGHKASFCLEDTECEGDIQKSYECANFGEQGITMGCWDMYRHDIDCQWVDITDVPP
GDYLFQVVINPNYEVAESDYTNNIMKCRTRYDGHRIWMYNCHIGGSFSEETEKKFEHFSGLINN
QLTSR

hide sequence

RefSeq Acc Id:

XP_020929774 ⟸ XM_021074115

- UniProtKB:

A0A8D0UAH5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERRAGSCLCSCLAVLALLPALSLAQYESWPHYPEYFQQPAPEYHRPQAPSDVVKIQLRLAGQK
RKHSEGRLEVYYNGQWGTVCDDDFSIHAAHVVCRELGYVEAKSWTASSSYGKGEGPIWLDNVYC
TGQEATLAACSSNGWGVTDCKHTEDVGVVCSDKRIPGFKFDNSLINNIENMNIQVEDIRIRAIL
SAYRKRTPVTEGYVEVKEGKTWKQICDKHWTAKNSRVVCGMFGFPGEKTYNAKVYKMFAARKKQ
RYWPFSMDCTGTEAHISSCKLGPQVSLDPVKNVTCENGLPAVVSCVPGQVFSADGPSRFRKAYK
PEQPLVRLRGGANVGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGSAKEAITGSRLGQG
IGPIHLNEIQCTGNEKSIIDCKFNAESQGCNHEEDAGVRCNIPAMGFQKKLRLNGGRNPYEGRV
EVLVERNGSLVWGTVCGENWGIVEAMVVCRQLGLGFASNAFQETWYWHGNAHNKVVMSGVKCSG
TELSLAHCRHDGEDVACPQGGVQYGAGVACSETAPDLVLNAEIVQQSTYLEDRPMFMLQCAMEE
NCLAASAAQTNPTTGYRRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLL
NLNGTKVAEGHKASFCLEDTECEGDIQKSYECANFGEQGITMGCWDMYRHDIDCQWVDITDVPP
GDYLFQVVINPNYEVAESDYTNNIMKCRTRYDGHRIWMYNCHIGGSFSEETEKKFEHFSGLINN
QLTSR

hide sequence

Ensembl Acc Id:

ENSSSCP00000065367 ⟸ ENSSSCT00000079299

Ensembl Acc Id:

ENSSSCP00000045152 ⟸ ENSSSCT00000046243

Protein Domains

SRCR

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000033608	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015068784	UniProtKB/TrEMBL
	ENSSSCG00070023729	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000046243	ENTREZGENE
	ENSSSCT00000046243.3	UniProtKB/TrEMBL
	ENSSSCT00000079299.1	UniProtKB/TrEMBL
	ENSSSCT00015092182.1	UniProtKB/TrEMBL
	ENSSSCT00070047352.1	UniProtKB/TrEMBL
	ENSSSCT00070047360.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.250.10	UniProtKB/TrEMBL
InterPro	LOX-like_protein	UniProtKB/TrEMBL
	Lysyl_oxidase	UniProtKB/TrEMBL
	Lysyl_oxidase_CS	UniProtKB/TrEMBL
	SRCR	UniProtKB/TrEMBL
	SRCR-like_dom	UniProtKB/TrEMBL
	SRCR-like_dom_sf	UniProtKB/TrEMBL
NCBI Gene	LOXL2	ENTREZGENE
PANTHER	LYSYL OXIDASE HOMOLOG 2	UniProtKB/TrEMBL
	LYSYL OXIDASE-LIKE-RELATED	UniProtKB/TrEMBL
Pfam	Lysyl_oxidase	UniProtKB/TrEMBL
	SRCR	UniProtKB/TrEMBL
PRINTS	LYSYLOXIDASE	UniProtKB/TrEMBL
	SPERACTRCPTR	UniProtKB/TrEMBL
PROSITE	LYSYL_OXIDASE	UniProtKB/TrEMBL
	SRCR_1	UniProtKB/TrEMBL
	SRCR_2	UniProtKB/TrEMBL
SMART	SM00202	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56487	UniProtKB/TrEMBL
UniProt	A0A287AM88_PIG	UniProtKB/TrEMBL
	A0A4X1VAA3_PIG	UniProtKB/TrEMBL
	A0A5G2R482_PIG	UniProtKB/TrEMBL
	A0A8D0UAH5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:89781	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD