POLE3 (DNA polymerase epsilon 3, accessory subunit) - Rat Genome Database

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Gene: POLE3 (DNA polymerase epsilon 3, accessory subunit) Sus scrofa
Analyze
Symbol: POLE3
Name: DNA polymerase epsilon 3, accessory subunit
RGD ID: 13917697
Description: ENCODES a protein that exhibits chromatin DNA binding (inferred); protein heterodimerization activity (inferred); INVOLVED IN chromatin remodeling (inferred); DNA damage response (inferred); DNA-templated DNA replication (inferred); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN epsilon DNA polymerase complex (ortholog); pericentric heterochromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA polymerase epsilon subunit 3; polymerase (DNA directed), epsilon 3, accessory subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,033,385 - 254,035,978 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,033,378 - 254,036,224 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,828,761 - 284,831,384 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POLE3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,033,385 - 254,035,978 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,033,378 - 254,036,224 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,828,761 - 284,831,384 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLE3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,407,235 - 113,410,749 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,407,235 - 113,410,675 (-)EnsemblGRCh38hg38GRCh38
GRCh379116,169,515 - 116,173,029 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,209,342 - 115,212,773 (-)NCBINCBI36Build 36hg18NCBI36
Build 349113,249,074 - 113,252,506NCBI
Celera986,817,115 - 86,820,629 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,776,442 - 85,779,955 (-)NCBIHuRef
CHM1_19116,316,144 - 116,319,658 (-)NCBICHM1_1
T2T-CHM13v2.09125,606,053 - 125,609,566 (-)NCBIT2T-CHM13v2.0
Pole3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,440,889 - 62,443,305 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,440,886 - 62,443,305 (-)EnsemblGRCm39 Ensembl
GRCm38462,523,798 - 62,525,014 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,522,649 - 62,525,068 (-)EnsemblGRCm38mm10GRCm38
MGSCv37462,184,832 - 62,186,048 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36462,010,159 - 62,011,375 (-)NCBIMGSCv36mm8
Celera461,191,011 - 61,192,227 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.17NCBI
Pole3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,989,508 - 80,992,742 (-)NCBIGRCr8
mRatBN7.2575,973,941 - 75,977,175 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,974,717 - 75,977,231 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl7109,236,321 - 109,236,758 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx578,373,292 - 78,376,528 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,190,389 - 80,193,625 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,165,904 - 80,169,140 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,380,813 - 78,384,047 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,380,816 - 78,384,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0582,500,184 - 82,503,419 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4579,517,590 - 79,520,825 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1579,522,705 - 79,525,938 (-)NCBI
Celera574,915,292 - 74,918,526 (-)NCBICelera
Cytogenetic Map5q24NCBI
Pole3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,086,940 - 14,089,330 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,086,940 - 14,089,906 (+)NCBIChiLan1.0ChiLan1.0
POLE3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21125,962,959 - 25,966,434 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1925,965,670 - 25,968,781 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,509,237 - 84,512,651 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,879,325 - 112,883,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,879,047 - 112,882,951 (-)Ensemblpanpan1.1panPan2
POLE3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,757,779 - 67,760,417 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,758,918 - 67,760,374 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1166,162,467 - 66,165,109 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,882,601 - 68,884,601 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,881,948 - 68,884,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,400,021 - 67,402,671 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,430,940 - 67,433,593 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,167,899 - 68,170,545 (-)NCBIUU_Cfam_GSD_1.0
Pole3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947183,043,822 - 183,045,595 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936559220,941 - 222,783 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLE3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,162,934 - 26,164,931 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,163,107 - 26,165,214 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,634,891 - 16,637,389 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pole3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,692,715 - 21,695,826 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476021,692,734 - 21,695,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POLE3
55 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 2 23 2 3 3
Low 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000050903   ⟹   ENSSSCP00000058896
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1254,033,385 - 254,035,978 (-)Ensembl
RefSeq Acc Id: XM_003122084   ⟹   XP_003122132
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11254,033,378 - 254,036,224 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003122132   ⟸   XM_003122084
- UniProtKB: A0A4X1V1W7 (UniProtKB/TrEMBL),   A0A287BQV3 (UniProtKB/TrEMBL),   A0A8D1IIE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000058896   ⟸   ENSSSCT00000050903

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005004392 UniProtKB/TrEMBL
  ENSSSCG00015021647 UniProtKB/TrEMBL
  ENSSSCG00025039440 UniProtKB/TrEMBL
  ENSSSCG00030007767 UniProtKB/TrEMBL
  ENSSSCG00035041605 UniProtKB/TrEMBL
  ENSSSCG00040007524 UniProtKB/TrEMBL
  ENSSSCG00045028685 UniProtKB/TrEMBL
  ENSSSCG00050052548 UniProtKB/TrEMBL
  ENSSSCG00055022640 UniProtKB/TrEMBL
  ENSSSCG00060049063 UniProtKB/TrEMBL
  ENSSSCG00065021119 UniProtKB/TrEMBL
  ENSSSCG00070021308 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000050903 ENTREZGENE
  ENSSSCT00000050903.3 UniProtKB/TrEMBL
  ENSSSCT00005006520.1 UniProtKB/TrEMBL
  ENSSSCT00005006532.1 UniProtKB/TrEMBL
  ENSSSCT00015028673.1 UniProtKB/TrEMBL
  ENSSSCT00025053664.1 UniProtKB/TrEMBL
  ENSSSCT00030010449.1 UniProtKB/TrEMBL
  ENSSSCT00035055277.1 UniProtKB/TrEMBL
  ENSSSCT00040009892.1 UniProtKB/TrEMBL
  ENSSSCT00045048948.1 UniProtKB/TrEMBL
  ENSSSCT00050071572.1 UniProtKB/TrEMBL
  ENSSSCT00055044497.1 UniProtKB/TrEMBL
  ENSSSCT00055044547.1 UniProtKB/TrEMBL
  ENSSSCT00060066623.1 UniProtKB/TrEMBL
  ENSSSCT00065028111.1 UniProtKB/TrEMBL
  ENSSSCT00070042356.1 UniProtKB/TrEMBL
  ENSSSCT00070042360.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro CBFA_NFYB_domain UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
KEGG Report ssc:100517450 UniProtKB/TrEMBL
NCBI Gene POLE3 ENTREZGENE
PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 UniProtKB/TrEMBL
  DNA POLYMERASE EPSILON SUBUNIT 3 UniProtKB/TrEMBL
Pfam CBFD_NFYB_HMF UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A287BQV3 ENTREZGENE
  A0A4X1V1W7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IIE3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BQV3 UniProtKB/TrEMBL
VGNC ID VGNC:103154 ENTREZGENE