FAM204A (family with sequence similarity 204 member A) - Rat Genome Database

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Gene: FAM204A (family with sequence similarity 204 member A) Sus scrofa
Analyze
Symbol: FAM204A
Name: family with sequence similarity 204 member A
RGD ID: 13906719
Description: FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C10orf84; C14H10orf84; protein FAM204A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14128,365,916 - 128,402,560 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114128,366,152 - 128,402,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214139,880,728 - 139,917,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712  


Genomics

Comparative Map Data
FAM204A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14128,365,916 - 128,402,560 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114128,366,152 - 128,402,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214139,880,728 - 139,917,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM204A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810118,297,925 - 118,342,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10118,297,925 - 118,342,328 (-)EnsemblGRCh38hg38GRCh38
GRCh3710120,057,437 - 120,101,836 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610120,058,562 - 120,091,808 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410120,058,561 - 120,091,808NCBI
Celera10113,799,164 - 113,832,438 (-)NCBICelera
Cytogenetic Map10q26.11NCBI
HuRef10113,697,636 - 113,730,878 (-)NCBIHuRef
CHM1_110120,352,610 - 120,385,891 (-)NCBICHM1_1
T2T-CHM13v2.010119,192,932 - 119,237,311 (-)NCBIT2T-CHM13v2.0
Fam204a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391960,187,018 - 60,215,137 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1960,187,018 - 60,215,133 (-)EnsemblGRCm39 Ensembl
GRCm381960,197,148 - 60,226,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1960,198,586 - 60,226,701 (-)EnsemblGRCm38mm10GRCm38
MGSCv371960,274,489 - 60,302,600 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361960,253,249 - 60,281,360 (-)NCBIMGSCv36mm8
Celera1962,387,664 - 62,415,670 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.52NCBI
Fam204a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81269,323,473 - 269,352,772 (-)NCBIGRCr8
mRatBN7.21259,328,551 - 259,366,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,337,709 - 259,367,077 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1267,543,514 - 267,572,764 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01274,249,546 - 274,278,796 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01266,895,823 - 266,925,136 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01281,343,692 - 281,403,699 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1281,347,536 - 281,376,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01288,697,398 - 288,730,537 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41266,749,513 - 266,779,356 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11266,967,048 - 266,990,027 (-)NCBI
Celera1254,985,319 - 255,014,612 (-)NCBICelera
Cytogenetic Map1q55NCBI
Fam204a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543122,920,817 - 22,942,165 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543122,920,076 - 22,947,959 (-)NCBIChiLan1.0ChiLan1.0
FAM204A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28130,171,654 - 130,207,565 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110130,164,096 - 130,212,903 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010114,870,818 - 114,916,884 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110118,307,273 - 118,339,838 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10118,307,058 - 118,339,838 (-)Ensemblpanpan1.1panPan2
FAM204A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12828,697,347 - 28,730,725 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2828,697,409 - 28,730,698 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2828,840,348 - 28,873,987 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02829,226,710 - 29,260,365 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2829,224,196 - 29,260,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12828,786,904 - 28,820,533 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02828,802,226 - 28,835,875 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02828,997,532 - 29,031,177 (-)NCBIUU_Cfam_GSD_1.0
Fam204a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721317,582,047 - 17,613,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364867,945,154 - 7,980,007 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364867,947,350 - 7,979,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM204A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19111,112,988 - 111,145,411 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9111,112,027 - 111,145,771 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604872,375,858 - 72,408,591 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam204a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473728,372,668 - 28,401,806 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM204A
966 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000011675   ⟹   ENSSSCP00000011373
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14128,365,916 - 128,402,537 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000060922   ⟹   ENSSSCP00000031144
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14128,367,087 - 128,402,552 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000087377   ⟹   ENSSSCP00000070214
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14128,378,754 - 128,402,560 (-)Ensembl
RefSeq Acc Id: NM_001185171   ⟹   NP_001172100
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114128,366,152 - 128,402,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671491   ⟹   XP_005671548
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114128,366,872 - 128,402,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671493   ⟹   XP_005671550
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114128,366,872 - 128,402,587 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671494   ⟹   XP_005671551
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114128,366,872 - 128,402,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671498   ⟹   XP_005671555
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114128,366,872 - 128,402,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021071868   ⟹   XP_020927527
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114128,366,872 - 128,402,531 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001172100   ⟸   NM_001185171
- UniProtKB: F1S4Q2 (UniProtKB/TrEMBL),   A0A4X1SY09 (UniProtKB/TrEMBL),   A0A480YWY3 (UniProtKB/TrEMBL),   A0A8D0P7G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005671550   ⟸   XM_005671493
- Peptide Label: isoform X1
- UniProtKB: F1S4Q2 (UniProtKB/TrEMBL),   A0A4X1SY09 (UniProtKB/TrEMBL),   A0A480YWY3 (UniProtKB/TrEMBL),   A0A8D0P7G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005671551   ⟸   XM_005671494
- Peptide Label: isoform X1
- UniProtKB: F1S4Q2 (UniProtKB/TrEMBL),   A0A4X1SY09 (UniProtKB/TrEMBL),   A0A480YWY3 (UniProtKB/TrEMBL),   A0A8D0P7G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005671548   ⟸   XM_005671491
- Peptide Label: isoform X1
- UniProtKB: F1S4Q2 (UniProtKB/TrEMBL),   A0A4X1SY09 (UniProtKB/TrEMBL),   A0A480YWY3 (UniProtKB/TrEMBL),   A0A8D0P7G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005671555   ⟸   XM_005671498
- Peptide Label: isoform X1
- UniProtKB: F1S4Q2 (UniProtKB/TrEMBL),   A0A4X1SY09 (UniProtKB/TrEMBL),   A0A480YWY3 (UniProtKB/TrEMBL),   A0A8D0P7G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020927527   ⟸   XM_021071868
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SY09 (UniProtKB/TrEMBL),   F1S4Q2 (UniProtKB/TrEMBL),   A0A480YWY3 (UniProtKB/TrEMBL),   A0A8D0P7G9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000011373   ⟸   ENSSSCT00000011675
Ensembl Acc Id: ENSSSCP00000031144   ⟸   ENSSSCT00000060922
Ensembl Acc Id: ENSSSCP00000070214   ⟸   ENSSSCT00000087377


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010674 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005003735 UniProtKB/TrEMBL
  ENSSSCG00015051175 UniProtKB/TrEMBL
  ENSSSCG00025024405 UniProtKB/TrEMBL
  ENSSSCG00030047722 UniProtKB/TrEMBL
  ENSSSCG00035079334 UniProtKB/TrEMBL
  ENSSSCG00040014258 UniProtKB/TrEMBL
  ENSSSCG00045032036 UniProtKB/TrEMBL
  ENSSSCG00050026720 UniProtKB/TrEMBL
  ENSSSCG00055004472 UniProtKB/TrEMBL
  ENSSSCG00060026179 UniProtKB/TrEMBL
  ENSSSCG00065036952 UniProtKB/TrEMBL
  ENSSSCG00070004718 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011675 ENTREZGENE
  ENSSSCT00000011675.5 UniProtKB/TrEMBL
  ENSSSCT00000060922 ENTREZGENE
  ENSSSCT00000060922.3 UniProtKB/TrEMBL
  ENSSSCT00000087377.1 UniProtKB/TrEMBL
  ENSSSCT00005005500.1 UniProtKB/TrEMBL
  ENSSSCT00005005515.1 UniProtKB/TrEMBL
  ENSSSCT00005005532.1 UniProtKB/TrEMBL
  ENSSSCT00005005554.1 UniProtKB/TrEMBL
  ENSSSCT00015068324.1 UniProtKB/TrEMBL
  ENSSSCT00015068441.1 UniProtKB/TrEMBL
  ENSSSCT00025032993.1 UniProtKB/TrEMBL
  ENSSSCT00025033101.1 UniProtKB/TrEMBL
  ENSSSCT00025033231.1 UniProtKB/TrEMBL
  ENSSSCT00030066632.1 UniProtKB/TrEMBL
  ENSSSCT00030066641.1 UniProtKB/TrEMBL
  ENSSSCT00030066657.1 UniProtKB/TrEMBL
  ENSSSCT00030066673.1 UniProtKB/TrEMBL
  ENSSSCT00035108425.1 UniProtKB/TrEMBL
  ENSSSCT00035108478.1 UniProtKB/TrEMBL
  ENSSSCT00035108518.1 UniProtKB/TrEMBL
  ENSSSCT00040019046.1 UniProtKB/TrEMBL
  ENSSSCT00040019060.1 UniProtKB/TrEMBL
  ENSSSCT00040019092.1 UniProtKB/TrEMBL
  ENSSSCT00040019120.1 UniProtKB/TrEMBL
  ENSSSCT00045054696.1 UniProtKB/TrEMBL
  ENSSSCT00045054803.1 UniProtKB/TrEMBL
  ENSSSCT00045054884.1 UniProtKB/TrEMBL
  ENSSSCT00050035946.1 UniProtKB/TrEMBL
  ENSSSCT00050035965.1 UniProtKB/TrEMBL
  ENSSSCT00055008821.1 UniProtKB/TrEMBL
  ENSSSCT00055008826.1 UniProtKB/TrEMBL
  ENSSSCT00055008828.1 UniProtKB/TrEMBL
  ENSSSCT00060035458.1 UniProtKB/TrEMBL
  ENSSSCT00060035468.1 UniProtKB/TrEMBL
  ENSSSCT00060035474.1 UniProtKB/TrEMBL
  ENSSSCT00065050404.1 UniProtKB/TrEMBL
  ENSSSCT00065050411.1 UniProtKB/TrEMBL
  ENSSSCT00065050413.1 UniProtKB/TrEMBL
  ENSSSCT00065050418.1 UniProtKB/TrEMBL
  ENSSSCT00065050426.1 UniProtKB/TrEMBL
  ENSSSCT00070009003.1 UniProtKB/TrEMBL
  ENSSSCT00070009005.1 UniProtKB/TrEMBL
  ENSSSCT00070009011.1 UniProtKB/TrEMBL
InterPro FAM204A UniProtKB/TrEMBL
KEGG Report ssc:100152540 UniProtKB/TrEMBL
NCBI Gene FAM204A ENTREZGENE
PANTHER PROTEIN FAM204A UniProtKB/TrEMBL
  PTHR14386 UniProtKB/TrEMBL
UniProt A0A286ZI60_PIG UniProtKB/TrEMBL
  A0A480YWY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SY09 ENTREZGENE
  A0A5G2RGA7_PIG UniProtKB/TrEMBL
  A0A8D0P7G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X4M8_PIG UniProtKB/TrEMBL
  A0A8D1BN38_PIG UniProtKB/TrEMBL
  A0A8D1DKA4_PIG UniProtKB/TrEMBL
  A0A8D1UW44_PIG UniProtKB/TrEMBL
  F1S4Q2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1SY09 UniProtKB/TrEMBL
VGNC ID VGNC:107389 ENTREZGENE