FAM204A (family with sequence similarity 204 member A) - Rat Genome Database

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Gene: FAM204A (family with sequence similarity 204 member A) Pan paniscus
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Symbol: FAM204A
Name: family with sequence similarity 204 member A
RGD ID: 12030277
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28130,171,654 - 130,207,565 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110130,164,096 - 130,212,903 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010114,870,818 - 114,916,884 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110118,307,273 - 118,339,838 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10118,307,058 - 118,339,838 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
FAM204A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28130,171,654 - 130,207,565 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110130,164,096 - 130,212,903 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010114,870,818 - 114,916,884 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110118,307,273 - 118,339,838 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10118,307,058 - 118,339,838 (-)Ensemblpanpan1.1panPan2
FAM204A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810118,297,925 - 118,342,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10118,297,925 - 118,342,328 (-)EnsemblGRCh38hg38GRCh38
GRCh3710120,057,437 - 120,101,836 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610120,058,562 - 120,091,808 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410120,058,561 - 120,091,808NCBI
Celera10113,799,164 - 113,832,438 (-)NCBICelera
Cytogenetic Map10q26.11NCBI
HuRef10113,697,636 - 113,730,878 (-)NCBIHuRef
CHM1_110120,352,610 - 120,385,891 (-)NCBICHM1_1
T2T-CHM13v2.010119,192,932 - 119,237,311 (-)NCBIT2T-CHM13v2.0
Fam204a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391960,187,018 - 60,215,137 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1960,187,018 - 60,215,133 (-)EnsemblGRCm39 Ensembl
GRCm381960,197,148 - 60,226,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1960,198,586 - 60,226,701 (-)EnsemblGRCm38mm10GRCm38
MGSCv371960,274,489 - 60,302,600 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361960,253,249 - 60,281,360 (-)NCBIMGSCv36mm8
Celera1962,387,664 - 62,415,670 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.52NCBI
Fam204a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81269,323,473 - 269,352,772 (-)NCBIGRCr8
mRatBN7.21259,328,551 - 259,366,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,337,709 - 259,367,077 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1267,543,514 - 267,572,764 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01274,249,546 - 274,278,796 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01266,895,823 - 266,925,136 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01281,343,692 - 281,403,699 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1281,347,536 - 281,376,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01288,697,398 - 288,730,537 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41266,749,513 - 266,779,356 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11266,967,048 - 266,990,027 (-)NCBI
Celera1254,985,319 - 255,014,612 (-)NCBICelera
Cytogenetic Map1q55NCBI
Fam204a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543122,920,817 - 22,942,165 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543122,920,076 - 22,947,959 (-)NCBIChiLan1.0ChiLan1.0
FAM204A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12828,697,347 - 28,730,725 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2828,697,409 - 28,730,698 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2828,840,348 - 28,873,987 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02829,226,710 - 29,260,365 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2829,224,196 - 29,260,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12828,786,904 - 28,820,533 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02828,802,226 - 28,835,875 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02828,997,532 - 29,031,177 (-)NCBIUU_Cfam_GSD_1.0
Fam204a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721317,582,047 - 17,613,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364867,945,154 - 7,980,007 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364867,947,350 - 7,979,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM204A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14128,365,916 - 128,402,560 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114128,366,152 - 128,402,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214139,880,728 - 139,917,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM204A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19111,112,988 - 111,145,411 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9111,112,027 - 111,145,771 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604872,375,858 - 72,408,591 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam204a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473728,372,668 - 28,401,806 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000014938   ⟹   ENSPPAP00000003240
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10118,307,058 - 118,339,433 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000014967   ⟹   ENSPPAP00000003246
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10118,307,273 - 118,339,838 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000014989   ⟹   ENSPPAP00000003249
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10118,308,374 - 118,333,931 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000014993   ⟹   ENSPPAP00000003252
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10118,308,374 - 118,333,931 (-)Ensembl
RefSeq Acc Id: XM_003825640   ⟹   XP_003825688
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28130,171,654 - 130,207,565 (-)NCBI
NHGRI_mPanPan110130,164,096 - 130,212,903 (-)NCBI
Mhudiblu_PPA_v010114,870,818 - 114,916,884 (-)NCBI
PanPan1.110118,307,273 - 118,339,809 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024930459   ⟹   XP_024786227
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28130,171,654 - 130,203,802 (-)NCBI
NHGRI_mPanPan110130,164,096 - 130,209,140 (-)NCBI
Mhudiblu_PPA_v010114,884,675 - 114,916,844 (-)NCBI
PanPan1.110118,307,273 - 118,339,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034931590   ⟹   XP_034787481
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28130,171,654 - 130,203,802 (-)NCBI
NHGRI_mPanPan110130,164,096 - 130,209,140 (-)NCBI
Mhudiblu_PPA_v010114,884,675 - 114,916,845 (-)NCBI
RefSeq Acc Id: XM_063607915   ⟹   XP_063463985
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28130,171,654 - 130,203,802 (-)NCBI
RefSeq Acc Id: XM_063607916   ⟹   XP_063463986
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28130,171,654 - 130,203,803 (-)NCBI
RefSeq Acc Id: XP_003825688   ⟸   XM_003825640
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZKH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024786227   ⟸   XM_024930459
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZKH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034787481   ⟸   XM_034931590
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZDY7 (UniProtKB/TrEMBL),   A0A2R8ZHK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000003240   ⟸   ENSPPAT00000014938
RefSeq Acc Id: ENSPPAP00000003252   ⟸   ENSPPAT00000014993
RefSeq Acc Id: ENSPPAP00000003249   ⟸   ENSPPAT00000014989
RefSeq Acc Id: ENSPPAP00000003246   ⟸   ENSPPAT00000014967
RefSeq Acc Id: XP_063463986   ⟸   XM_063607916
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063463985   ⟸   XM_063607915
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000013679 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000014938.1 UniProtKB/TrEMBL
  ENSPPAT00000014967.1 UniProtKB/TrEMBL
  ENSPPAT00000014989.1 UniProtKB/TrEMBL
  ENSPPAT00000014993.1 UniProtKB/TrEMBL
InterPro FAM204A UniProtKB/TrEMBL
KEGG Report pps:100971868 UniProtKB/TrEMBL
NCBI Gene FAM204A ENTREZGENE
PANTHER PROTEIN FAM204A UniProtKB/TrEMBL
  PTHR14386 UniProtKB/TrEMBL
UniProt A0A2R8ZDY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZDY9_PANPA UniProtKB/TrEMBL
  A0A2R8ZHK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZKH7 ENTREZGENE, UniProtKB/TrEMBL