TATDN1 (TatD DNase domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: TATDN1 (TatD DNase domain containing 1) Sus scrofa
Analyze
Symbol: TATDN1
Name: TatD DNase domain containing 1
RGD ID: 13905745
Description: ENCODES a protein that exhibits hydrolase activity (inferred); hydrolase activity, acting on ester bonds (inferred); metal ion binding (inferred); INVOLVED IN DNA metabolic process (inferred); ASSOCIATED WITH hepatocellular carcinoma (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: deoxyribonuclease TATDN1; putative deoxyribonuclease TATDN1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,113,312 - 15,159,498 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,113,318 - 15,159,501 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,769,867 - 15,816,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
TATDN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,113,312 - 15,159,498 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,113,318 - 15,159,501 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,769,867 - 15,816,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TATDN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388124,488,494 - 124,539,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8124,488,485 - 124,539,458 (-)EnsemblGRCh38hg38GRCh38
GRCh378125,500,735 - 125,551,329 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368125,569,930 - 125,620,492 (-)NCBINCBI36Build 36hg18NCBI36
Build 348125,569,931 - 125,620,492NCBI
Celera8121,688,850 - 121,739,446 (-)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8120,826,460 - 120,876,799 (-)NCBIHuRef
CHM1_18125,540,989 - 125,591,573 (-)NCBICHM1_1
T2T-CHM13v2.08125,621,522 - 125,672,104 (-)NCBIT2T-CHM13v2.0
Tatdn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391558,762,002 - 58,805,605 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1558,762,004 - 58,805,587 (-)EnsemblGRCm39 Ensembl
GRCm381558,890,153 - 58,933,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,890,155 - 58,933,738 (-)EnsemblGRCm38mm10GRCm38
MGSCv371558,721,708 - 58,765,285 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361558,720,236 - 58,763,813 (-)NCBIMGSCv36mm8
Celera1560,419,367 - 60,463,522 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.09NCBI
Tatdn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,339,452 - 92,370,445 (-)NCBIGRCr8
mRatBN7.2790,449,979 - 90,481,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,441,079 - 90,481,133 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx792,339,624 - 92,370,549 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0794,540,780 - 94,571,705 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0794,368,038 - 94,398,972 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0798,782,164 - 98,813,001 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl798,782,178 - 98,804,499 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0799,382,591 - 99,411,479 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4795,661,777 - 95,688,070 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera787,216,376 - 87,246,291 (-)NCBICelera
Cytogenetic Map7q33NCBI
Tatdn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555403,157,902 - 3,198,064 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555403,154,273 - 3,198,140 (-)NCBIChiLan1.0ChiLan1.0
TATDN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27141,909,537 - 141,960,772 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18117,420,698 - 117,471,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08121,172,652 - 121,223,898 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18123,925,580 - 123,975,908 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8123,925,580 - 123,975,908 (-)Ensemblpanpan1.1panPan2
TATDN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11322,561,003 - 22,624,891 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1322,573,150 - 22,624,987 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1322,526,573 - 22,590,366 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,902,967 - 22,966,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,915,023 - 22,966,909 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11322,623,357 - 22,687,633 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01322,733,160 - 22,797,184 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01322,976,000 - 23,040,061 (-)NCBIUU_Cfam_GSD_1.0
Tatdn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530315,697,525 - 15,730,665 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,123,730 - 23,167,274 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647023,123,693 - 23,156,764 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TATDN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18119,055,356 - 119,103,328 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8119,052,415 - 119,102,839 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603921,082,891 - 21,130,886 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tatdn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473530,667,293 - 30,714,863 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TATDN1
1900 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000029865   ⟹   ENSSSCP00000024714
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,113,318 - 15,159,498 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000032699   ⟹   ENSSSCP00000030648
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,116,073 - 15,159,499 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000034999   ⟹   ENSSSCP00000032286
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,126,228 - 15,159,491 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000035892   ⟹   ENSSSCP00000028704
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,113,037 - 15,159,498 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000053540   ⟹   ENSSSCP00000037393
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,113,312 - 15,159,497 (+)Ensembl
RefSeq Acc Id: NM_001244525   ⟹   NP_001231454
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,113,346 - 15,159,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005662855   ⟹   XP_005662912
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,113,318 - 15,159,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088661   ⟹   XP_020944320
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,115,269 - 15,159,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088662   ⟹   XP_020944321
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,121,681 - 15,159,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088663   ⟹   XP_020944322
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,113,320 - 15,159,501 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088664   ⟹   XP_020944323
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,133,482 - 15,159,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088665   ⟹   XP_020944324
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,133,482 - 15,159,491 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005662912   ⟸   XM_005662855
- Peptide Label: isoform X1
- UniProtKB: A0A287A0F5 (UniProtKB/TrEMBL),   A0A4X1T073 (UniProtKB/TrEMBL),   A0A4X1T0Y2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944322   ⟸   XM_021088663
- Peptide Label: isoform X3
- UniProtKB: A0A4X1T0B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231454   ⟸   NM_001244525
- UniProtKB: A0A8D0ZR77 (UniProtKB/TrEMBL),   I3LKU9 (UniProtKB/TrEMBL),   A0A4X1T0Y2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944320   ⟸   XM_021088661
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SYH0 (UniProtKB/TrEMBL),   A0A4X1T0Y2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944321   ⟸   XM_021088662
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SYH0 (UniProtKB/TrEMBL),   A0A4X1T0Y2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944323   ⟸   XM_021088664
- Peptide Label: isoform X4
- UniProtKB: A0A8D1KVU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944324   ⟸   XM_021088665
- Peptide Label: isoform X5
- UniProtKB: A0A8D1KVU2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000024714   ⟸   ENSSSCT00000029865
Ensembl Acc Id: ENSSSCP00000032286   ⟸   ENSSSCT00000034999
Ensembl Acc Id: ENSSSCP00000028704   ⟸   ENSSSCT00000035892
Ensembl Acc Id: ENSSSCP00000030648   ⟸   ENSSSCT00000032699
Ensembl Acc Id: ENSSSCP00000037393   ⟸   ENSSSCT00000053540


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030603 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015002813 UniProtKB/TrEMBL
  ENSSSCG00025032659 UniProtKB/TrEMBL
  ENSSSCG00030025341 UniProtKB/TrEMBL
  ENSSSCG00035035567 UniProtKB/TrEMBL
  ENSSSCG00040045388 UniProtKB/TrEMBL
  ENSSSCG00045014303 UniProtKB/TrEMBL
  ENSSSCG00050013367 UniProtKB/TrEMBL
  ENSSSCG00055002816 UniProtKB/TrEMBL
  ENSSSCG00060031271 UniProtKB/TrEMBL
  ENSSSCG00065058492 UniProtKB/TrEMBL
  ENSSSCG00070005310 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029865 ENTREZGENE
  ENSSSCT00000029865.5 UniProtKB/TrEMBL
  ENSSSCT00000053540 ENTREZGENE
  ENSSSCT00000053540.3 UniProtKB/TrEMBL
  ENSSSCT00015003519.1 UniProtKB/TrEMBL
  ENSSSCT00015003539.1 UniProtKB/TrEMBL
  ENSSSCT00025044408.1 UniProtKB/TrEMBL
  ENSSSCT00030035362.1 UniProtKB/TrEMBL
  ENSSSCT00030035378.1 UniProtKB/TrEMBL
  ENSSSCT00030035422.1 UniProtKB/TrEMBL
  ENSSSCT00030035435.1 UniProtKB/TrEMBL
  ENSSSCT00030035445.1 UniProtKB/TrEMBL
  ENSSSCT00035047151.1 UniProtKB/TrEMBL
  ENSSSCT00035047159.1 UniProtKB/TrEMBL
  ENSSSCT00035047165.1 UniProtKB/TrEMBL
  ENSSSCT00040061120.1 UniProtKB/TrEMBL
  ENSSSCT00045024367.1 UniProtKB/TrEMBL
  ENSSSCT00050018045.1 UniProtKB/TrEMBL
  ENSSSCT00050018056.1 UniProtKB/TrEMBL
  ENSSSCT00055005404.1 UniProtKB/TrEMBL
  ENSSSCT00055005412.1 UniProtKB/TrEMBL
  ENSSSCT00060042309.1 UniProtKB/TrEMBL
  ENSSSCT00060042315.1 UniProtKB/TrEMBL
  ENSSSCT00065080021.1 UniProtKB/TrEMBL
  ENSSSCT00070010066.1 UniProtKB/TrEMBL
  ENSSSCT00070010079.1 UniProtKB/TrEMBL
  ENSSSCT00070010097.1 UniProtKB/TrEMBL
  ENSSSCT00070010116.1 UniProtKB/TrEMBL
  ENSSSCT00070010124.1 UniProtKB/TrEMBL
  ENSSSCT00070010130.1 UniProtKB/TrEMBL
  ENSSSCT00070010141.1 UniProtKB/TrEMBL
Gene3D-CATH Metal-dependent hydrolases UniProtKB/TrEMBL
InterPro DNase_TatD-rel_CS UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
  TatD-type_Hydrolase UniProtKB/TrEMBL
  TatD_family UniProtKB/TrEMBL
KEGG Report ssc:100625102 UniProtKB/TrEMBL
NCBI Gene TATDN1 ENTREZGENE
PANTHER DEOXYRIBONUCLEASE TATDN1-RELATED UniProtKB/TrEMBL
  TATD FAMILY DEOXYRIBONUCLEASE UniProtKB/TrEMBL
Pfam TatD_DNase UniProtKB/TrEMBL
PIRSF DNase_TatD UniProtKB/TrEMBL
PROSITE TATD_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF51556 UniProtKB/TrEMBL
UniProt A0A287A0F5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SYH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T063_PIG UniProtKB/TrEMBL
  A0A4X1T073 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T098_PIG UniProtKB/TrEMBL
  A0A4X1T0B8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T0Y2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0W5D0_PIG UniProtKB/TrEMBL
  A0A8D0W614_PIG UniProtKB/TrEMBL
  A0A8D0ZIB7_PIG UniProtKB/TrEMBL
  A0A8D0ZR77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C3T6_PIG UniProtKB/TrEMBL
  A0A8D1KVU2 ENTREZGENE, UniProtKB/TrEMBL
  I3LKU9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98359 ENTREZGENE