Tatdn1 (TatD DNase domain containing 1)

Gene: Tatdn1 (TatD DNase domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Tatdn1

Name:

TatD DNase domain containing 1

RGD ID:

8727424

Description:

ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

putative deoxyribonuclease TATDN1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955540	3,157,902 - 3,198,064 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955540	3,154,273 - 3,198,140 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hepatocellular carcinoma (ISO)

trichorhinophalangeal syndrome type I (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tatdn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955540	3,157,902 - 3,198,064 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955540	3,154,273 - 3,198,140 (-)	NCBI	ChiLan1.0	ChiLan1.0

TATDN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	124,488,494 - 124,539,088 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	124,488,485 - 124,539,458 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	125,500,735 - 125,551,329 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	125,569,930 - 125,620,492 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	125,569,931 - 125,620,492	NCBI
Celera	8	121,688,850 - 121,739,446 (-)	NCBI		Celera
Cytogenetic Map	8	q24.13	NCBI
HuRef	8	120,826,460 - 120,876,799 (-)	NCBI		HuRef
CHM1_1	8	125,540,989 - 125,591,573 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	125,621,522 - 125,672,104 (-)	NCBI		T2T-CHM13v2.0

Tatdn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	58,762,002 - 58,805,605 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	58,762,004 - 58,805,587 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	58,890,153 - 58,933,756 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	58,890,155 - 58,933,738 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	58,721,708 - 58,765,285 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	58,720,236 - 58,763,813 (-)	NCBI		MGSCv36	mm8
Celera	15	60,419,367 - 60,463,522 (-)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	25.09	NCBI

Tatdn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	92,339,452 - 92,370,445 (-)	NCBI		GRCr8
mRatBN7.2	7	90,449,979 - 90,481,000 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	90,441,079 - 90,481,133 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	92,339,624 - 92,370,549 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	94,540,780 - 94,571,705 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	94,368,038 - 94,398,972 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	98,782,164 - 98,813,001 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	98,782,178 - 98,804,499 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	99,382,591 - 99,411,479 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	95,661,777 - 95,688,070 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	87,216,376 - 87,246,291 (-)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI

TATDN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	141,909,537 - 141,960,772 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	117,420,698 - 117,471,941 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	121,172,652 - 121,223,898 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	123,925,580 - 123,975,908 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	123,925,580 - 123,975,908 (-)	Ensembl	panpan1.1		panPan2

TATDN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	22,561,003 - 22,624,891 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	22,573,150 - 22,624,987 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	22,526,573 - 22,590,366 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	22,902,967 - 22,966,810 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	22,915,023 - 22,966,909 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	22,623,357 - 22,687,633 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	22,733,160 - 22,797,184 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	22,976,000 - 23,040,061 (-)	NCBI		UU_Cfam_GSD_1.0

Tatdn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	15,697,525 - 15,730,665 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	23,123,730 - 23,167,274 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	23,123,693 - 23,156,764 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TATDN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	15,113,312 - 15,159,498 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	15,113,318 - 15,159,501 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	15,769,867 - 15,816,058 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TATDN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	119,055,356 - 119,103,328 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	119,052,415 - 119,102,839 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	21,082,891 - 21,130,886 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tatdn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624735	30,667,293 - 30,714,863 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013507914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013507915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013507917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001232123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001232124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001232125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001232126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01071335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01071336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01177239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000755 ⟹ ENSCLAP00000000720

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955540	3,157,902 - 3,198,064 (-)	Ensembl

RefSeq Acc Id:

XM_013507914 ⟹ XP_013363368

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955540	3,154,273 - 3,180,007 (-)	NCBI

Sequence:

show sequence

TTATTTGTGCTTTCTGCAGATATTGGTATCAACTTGACAGATCCTATGTTCAGAGGAATTTATA
GAGGGGTTCAGAAGCATCAAGATGACTTGCAGGATGTGATAGAGAGAGCCGTCCAGATTGGTGT
TAAAAAGTTTATGATTACAGGTGGAGATCTACAAGACAGTAAAGAGGCACTGCAGTTGGCGCAG
ACAAAAGATATGTTTTTCAGCACAGTTGGTTGCCATCCTACAAGATGTGGTGAATTTGAAAAGA
ATAATCCTGATCTTTACCTGAATGAGTTGCTAGATCTTGCTGAAAACAACAAGGGAAAAGTTGT
AGCAATAGGGGAGTGTGGACTCGATTTTGACCGGCTACAGTTTTGCCCCAAAGATATTCAGCTT
AAATATTTTGAAAAACAATTTGAACTGTCTGAACAAACAAAATTACCAATGTTTCTTCATTGTC
GAAACTCACATGATGAATTTTTGGATATAATGAAGAGAAACAGAGATCGGTGTGTAGGTGGAGT
GGTACACTCATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGACCGACTTGGATCTTTATATA
GGGTTTAATGGTTGCTCACTGAAAACTGAGGCAAATTTGGAAGTTTTGAAGTCAATACCTAGCG
AAAAATTAATGATTGAGACTGATGCGCCTTGGTGTGGAGTTAAAAGTACACATGCTGGATCAAA
ATATATAAAAACTTCATTTCCTACCAAGAAGAAATGGGAAAATGGGCATTGTTTAAAAGACAGA
AATGAACCCTGCCATATAATTCAAATACTGGAGATAATGTCAGCAGTAAGAGATGAGGATCCAC
TGGAATTAGCCAATACGCTATATAACAACACCATTAAAATATTTTTTTCCTGATATTTAATTGG
CATATTCCATCATGTATGAAAAACTTCCTGGTAAAATTTACTGTAAATTTCAATAAAAGAAAAT
TATCTGAAAGCT

hide sequence

RefSeq Acc Id:

XM_013507915 ⟹ XP_013363369

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955540	3,155,771 - 3,198,138 (-)	NCBI

Sequence:

show sequence

CAGGACTAATCCCGGAAGGGCGGGCCGACCGAGGACACGTCTGCTTCCGCCGGGGTGGAGGCGG
AGGTGCAGCCATGAGTCGCTTCAAGTTCGTGGATATTGGTATCAACTTGACAGATCCTATGTTC
AGAGGAATTTATAGAGGGGTTCAGAAGCATCAAGATGACTTGCAGGATGTGATAGAGAGAGCCG
TCCAGATTGGTGTTAAAAAGTTTATGATTACAGGTGGAGATCTACAAGACAGTAAAGAGGCACT
GCAGTTGGCGCAGACAAAAGATATGTTTTTCAGCACAGTTGGTTGCCATCCTACAAGATGTGGT
GAATTTGAAAAGAATAATCCTGATCTTTACCTGAATGAGTTGCTAGATCTTGCTGAAAACAACA
AGGGAAAAGTTGTAGCAATAGGGGAGTGTGGACTCGATTTTGACCGGCTACAGTTTTGCCCCAA
AGATATTCAGCTTAAATATTTTGAAAAACAATTTGAACTGTCTGAACAAACAAAATTACCAATG
TTTCTTCATTGTCGAAACTCACATGATGAATTTTTGGATATAATGAAGAGAAACAGAGATCGGT
GTGTAGGTGGAGTGGTACACTCATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGACCGACTT
GGATCTTTATATAGGGTTTAATGGTTGGTACGTTGTTAGCTCACTGAAAACTGAGGCAAATTTG
GAAGTTTTGAAGTCAATACCTAGCGAAAAATTAATGATTGAGACTGATGCGCCTTGGTGTGGAG
TTAAAAGTACACATGCTGGATCAAAATATATAAAAACTTCATTTCCTACCAAGAAGAAATGGGA
AAATGGGCATTGTTTAAAAGACAGAAATGAACCCTGCCATATAATGTAAGTGTTTTTCTTTTAT
GGTCTTCAGAATCGCTGAAGGCAGCCACCAAATGCCGGTTACTAAAAAATGAAGTCTAAGGGCA
GAACTGAAGTTTTGTGAAATCCAGATCTAGTACAGGTCATTCTGACAAGTGTACACGGAAACAT
GTAATGTGCACACACGCATACATTACTATGAGCTAAAGTTCAATTGCAGGTCAAAGATTATTTC
AGCGATGTTCAGAAGAATCTGTACCTGAATTTCTGTATCTGGACTCCTAGCTTCACATCCTTTC
AACCTAGCAAATTTATTGCAGCAGTGAGAAATCTGATTTTGGATTGGTTACCTGTCATTCTGCA
AGAAGGAAAAGATCCTATAGCTATCCATGCACCCTACCTGACCTAAGTTTATTCTCATGTACTT
TCTCTTCTATTTGTAACCAGTTAGCCTTAGCAGACCTTTTGTGAATGTGTCTGCAGTTTACATG
ATTTCACAACCTGAATATAGGAAATAACACATTTCTTTAAGCGTAGGAACAAAATGACAAGTGA
TAGGGTTTCCTTTTCTACCCTTGCTCCCAAAAAAGGCAGAACTTTGTAACACATTCAAAAAAAT
TAATACTGGATTGTTACCTTTAGACTGCCAATTTTTCCAAAATGCAATTTTTTTTTTTTTTACT
AATTTTTAATAATGAATATTAGATAAACCAGGTCTAAAATTCAGCAGGCAGAAAAATGGGAGAC
TTGTCCTATAAAAATTATTTGAGAGGTTTTTTTTTTCCTTAATTGTTGACTCTGGCAGACTTTG
TAAAATTCAGTGATTTAAGGTCTATAGATTTAGGGATGTATTTAGACTCTGGTTAGTAAAAAAC
AAATCACTTGTCATTTTTATGAAATACAGATACTTGCAAATTTAGTCAGAAGACAGTATTTCTA
ATTATTTTTTGGAGATTTAAGAGGACACTAGAAATGACTGGTATTTTGCTAGCTGCCAGCCTAG
AAGGAGTAGGTGCTAATAGTGTGTCCAAGTCAGTTTTCTGTACTGTCTTAATCTTAAGTAAAAT
TATAGCCATTCACTTAAGTTATGCTAATTACTAATTGGCAAGTTAATTTCTACTTAAAAGTGTT
GTATTTATCAACCTCCATTCTGTTGAGTTTTACAGTCATTACTATATAGAGGTCTTACCTCTCT
TTTAGATTAGAAATTCATTGAAAGAGACATTTTGGAGCTCTTGCCGCACATCAGGAAAGGTGCA
GATTACTAAGGCTACAAGAATCAAGACAGTCCCTGTGCTCATCCACCCGCCACATGAACAGGTT
TCCTGTGCCAGGCACTTGGGGTGAGGCACTCAGAATTAGACACTGGCCACCTGCACTCCTGAAG
CAAACAAACAGAAAACATAATAGTCTGAGATGGCAAAGCTTTTACAGAATCTGTGTCCAGGAAC
AGAGACATGAAAACTGTCTGCCTACAGGATTAGAAAAGTACTTTACTTAGGTGACATTTCAGCT
GTTTACTAAGGAAGACTGGGAATCAGGCCAAAGACCTTAAGCAAAGGCCTATTGCAGAAGACTC
GCTGACTCAGGGAAACAATGAGCTTAGTGTGGCAAAGTAGGGTGCACAGGGTAATGGAAGGAGA
GAAGTCTGGGAAGGCAAAGTGAGGCCAGATTGTCAGGTCTCCTGTATGCCAACCTTAGTAGTTT
AGATTTTATGAGGACCCAAAGGATTTTAAATGGGAGAATGGCAAAAATAAAGCCCCCGTTCTAA
CAGGTTAACAGAAGGGACTGGAAAAGAGGTGGGTGGTAGAATCATATAGCTCTTTCCAAGACGT
AACTGCCTAGTTTAAGAATGCCACATTAAACAGATGCCATTCAGTTCTCAGGGACAATAAACTT
CCTTTTTTATAGAAGTATAACTATAGCTTGAGGCTACGTAAGCTATCTAGGAACAGCCGGGCTG
CAAGGGAGATGTTCAGAGAGTGCCATAAACTTTATTATTGCGCATACAGAAGCAGAAGGTTCCA
CTAAGCACTAAAGGACTTAGTAGGAAATTTGTAAGTCAGGTGTGGGGACACACACCTTTAATTC
CAGCTTGTGGGAGCCTGAGGCAAGAGCTGAAGGCCAGAGTGGGCCACATGGTGAGTTCAAGG

hide sequence

RefSeq Acc Id:

XM_013507917 ⟹ XP_013363371

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955540	3,154,273 - 3,198,140 (-)	NCBI

Sequence:

show sequence

GGCAGGACTAATCCCGGAAGGGCGGGCCGACCGAGGACACGTCTGCTTCCGCCGGGGTGGAGGC
GGAGGTGCAGCCATGAGTCGCTTCAAGTTCGTGGATATTGGTATCAACTTGACAGATCCTATGT
TCAGAGGAATTTATAGAGGGGTTCAGAAGCATCAAGATGACTTGCAGGATGTGATAGAGAGAGC
CGTCCAGATTGGTGTTAAAAAGTTTATGATTACAGGTGGAGATCTACAAGACAGTAAAGAGGCA
CTGCAGTTGGCGCAGACAAAAGATATGTTTTTCAGCACAGTTGGTTGCCATCCTACAAGATGTG
GTGAATTTGAAAAGAATAATCCTGATCTTTACCTGAATGAGTTGCTAGATCTTGCTGAAAACAA
CAAGGGAAAAGTTGTAGCAATAGGGGAGTGTGGACTCGATTTTGACCGGCTACAGTTTTGCCCC
AAAGATATTCAGCTTAAATATTTTGAAAAACAATTTGAACTGTCTGAACAAACAAAATTACCAA
TGTTTCTTCATTGTCGAAACTCACATGATGAATTTTTGGATATAATGAAGAGAAACAGAGATCG
GTGTGTAGGTGGAGTGGTACACTCATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGACCGAC
TTGGATCTTTATATAGGGTTTAATGGTTGGTACGTTGTTAGCTCACTGAAAACTGAGGCAAATT
TGGAAGTTTTGAAGTCAATACCTAGCGAAAAATTAATGATTGAGACTGATGCGCCTTGGTGTGG
AGTTAAAAGTACACATGCTGGATCAAAATATATAAAAACTTCATTTCCTACCAAGAAGAAATGG
GAAAATGGGCATTGTTTAAAAGACAGAAATGAACCCTGCCATATAATTCAAATACTGGAGATAA
TGTCAGCAGTAAGAGATGAGGATCCACTGGAATTAGCCAATACGCTATATAACAACACCATTAA
AATATTTTTTTCCTGATATTTAATTGGCATATTCCATCATGTATGAAAAACTTCCTGGTAAAAT
TTACTGTAAATTTCAATAAAAGAAAATTATCTGAAAGCT

hide sequence

RefSeq Acc Id:

XR_001232123

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955540	3,157,998 - 3,198,138 (-)	NCBI

Sequence:

show sequence

CAGGACTAATCCCGGAAGGGCGGGCCGACCGAGGACACGTCTGCTTCCGCCGGGGTGGAGGCGG
AGGTGCAGCCATGAGTCGCTTCAAGTTCGTGGATATTGGTATCAACTTGACAGATCCTATGTTC
AGAGGAATTTATAGAGGGGTTCAGAAGCATCAAGATGACTTGCAGGATGTGATAGAGAGAGCCG
TCCAGATTGGTGTTAAAAAGTTTATGATTACAGGTGGAGATCTACAAGACAGTAAAGAGGCACT
GCAGTTGGCGCAGACAAAAGATATGTTTTTCAGCACAGTTGGTTGCCATCCTACAAGATGTGGT
GAATTTGAAAAGAATAATCCTGATCTTTACCTGAATGAGTTGCTAGATCTTGCTGAAAACAACA
AGGGAAAAGTTGTAGCAATAGGGGAGTGTGGACTCGATTTTGACCGGCTACAGTTTTGCCCCAA
AGATATTCAGCTTAAATATTTTGAAAAACAATTTGAACTGTCTGAACAAACAAAATTACCAATG
TTTCTTCATTGTCGAAACTCACATGATGAATTTTTGGATATAATGAAGAGAAACAGAGATCGGT
GTGTAGGTGGAGTGGTACACTCATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGACCGACTT
GGATCTTTATATAGGGTTTAATGCTCACTGAAAACTGAGGCAAATTTGGAAGTTTTGAAGTCAA
TACCTAGCGAAAAATTAATGATTGAGACTGATGCGCCTTGGTGTGGAGTTAAAAGTACA

hide sequence

RefSeq Acc Id:

XR_001232124

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955540	3,158,009 - 3,198,138 (-)	NCBI

Sequence:

show sequence

CAGGACTAATCCCGGAAGGGCGGGCCGACCGAGGACACGTCTGCTTCCGCCGGGGTGGAGGCGG
AGGTGCAGCCATGAGTCGCTTCAAGTTCGTGGATATTGGTATCAACTTGACAGATCCTATGTTC
AGAGGAATTTATAGAGGGGTTCAGAAGCATCAAGATGACTTGCAGGATGTGATAGAGAGAGCCG
TCCAGATTGGTGTTAAAAAGTTTATGATTACAGGTGGAGATCTACAAGACAGTAAAGAGGCACT
GCAGTTGGCGCAGACAAAAGATATGTTTTTCAGCACAGTTGGTTGCCATCCTACAAGATGTGGT
GAATTTGAAAAGAATAATCCTGATCTTTACCTGAATGAGTTGCTAGATCTTGCTGAAAACAACA
AGGGAAAAGTTGTAGCAATAGGGGAGTGTGGACTCGATTTTGACCGGCTACAGTTTTGCCCCAA
AGATATTCAGCTTAAATATAATGAAGAGAAACAGAGATCGGTGTGTAGGTGGAGTGGTACACTC
ATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGACCGACTTGGATCTTTATATAGGGTTTAAT
GGTTGCTCACTGAAAACTGAGGCAAATTTGGAAGTTTTGAAGTCAATACCTAGCGAAAAATTAA
TGATTGAGACTGATGCGCCTTGGTGTGGAG

hide sequence

RefSeq Acc Id:

XR_001232125

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955540	3,158,946 - 3,198,138 (-)	NCBI

Sequence:

show sequence

CAGGACTAATCCCGGAAGGGCGGGCCGACCGAGGACACGTCTGCTTCCGCCGGGGTGGAGGCGG
AGGTGCAGCCATGAGTCGCTTCAAGTTCGTGGATATTGGTATCAACTTGACAGATCCTATGTTC
AGAGGAATTTATAGAGGGGTTCAGAAGCATCAAGATGACTTGCAGGATGTGATAGAGAGAGCCG
TCCAGATTGGTGTTAAAAAGTTTATGATTACAGGTGGAGATCTACAAGACAGTAAAGAGGCACT
GCAGTTGGCGCAGACAAAAGATATGTTTTTCAGCACAGTTGGTTGCCATCCTACAAGATGTGGT
GAATTTGAAAAGAATAATCCTGATCTTTACCTGAATGAGTTGCTAGATCTTGCTGAAAACAACA
AGGGAAAAGTTGTAGCAATAGGGGAGTGTGGACTCGATTTTGACCGGCTACAGTTTTGCCCCAA
AGATATTCAGCTTAAATATAATGAAGAGAAACAGAGATCGGTGTGTAGGTGGAGTGGTACACTC
ATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGACCGACTTGGATCTTTATATAGGGTTTAAT
GGTTGGTACGTTGTTAGCTCACTGAAAACTGAGGCAAATTTGGAAGTTTTGAAGTCAATACCTA
GCGAAAAATTAATGATTGAGACTG

hide sequence

RefSeq Acc Id:

XR_001232126

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955540	3,158,946 - 3,198,138 (-)	NCBI

Sequence:

show sequence

CAGGACTAATCCCGGAAGGGCGGGCCGACCGAGGACACGTCTGCTTCCGCCGGGGTGGAGGCGG
AGGTGCAGCCATGAGTCGCTTCAAGTTCGTGGATATTGGTATCAACTTGACAGATCCTATGTTC
AGAGGAATTTATAGAGGGGTTCAGAAGCATCAAGATGACTTGCAGGATGTGATAGAGAGAGCCG
TCCAGATTGGTGTTAAAAAGTTTATGATTACAGGTGGAGATCTACAAGACAGTAAAGAGGCACT
GCAGTTGGCGCAGACAAAAGATATGTTTTTCAGCACAGTTGGTTGCCATCCTACAAGATGTGGT
GAATTTGAAAAGAATAATCCTGATCTTTACCTGAATGAGTTGCTAGATCTTGCTGAAAACAACA
AGGGAAAAGTTGTAGCAATAGGGGAGTGTGGACTCGATTTTGACCGGCTACAGTTTTGCCCCAA
AGATATTCAGCTTAAATATAATGAAGAGAAACAGAGATCGGTGTGTAGGTGGAGTGGTACACTC
ATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGACCGACTTGGATCTTTATATAGGGTTTAAT
GCTCACTGAAAACTGAGGCAAATTTGGAAGTTTTGAAGTCAATACCTAGCGAAAAATTAATGAT
TGAGACTG

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Protein Sequences


Protein RefSeqs	XP_013363368	(Get FASTA)	NCBI Sequence Viewer
	XP_013363369	(Get FASTA)	NCBI Sequence Viewer
	XP_013363371	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000720
	ENSCLAP00000000720.1

RefSeq Acc Id:	XP_013363371 ⟸ XM_013507917
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UMU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIERAVQIGVKKFMITGGDLQDSKEALQLA QTKDMFFSTVGCHPTRCGEFEKNNPDLYLNELLDLAENNKGKVVAIGECGLDFDRLQFCPKDIQ LKYFEKQFELSEQTKLPMFLHCRNSHDEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALTDLDLY IGFNGWYVVSSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIKTSFPTKKKWENGH CLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKIFFS hide sequence

RefSeq Acc Id:	XP_013363368 ⟸ XM_013507914
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UMU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRGIYRGVQKHQDDLQDVIERAVQIGVKKFMITGGDLQDSKEALQLAQTKDMFFSTVGCHPTR CGEFEKNNPDLYLNELLDLAENNKGKVVAIGECGLDFDRLQFCPKDIQLKYFEKQFELSEQTKL PMFLHCRNSHDEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALTDLDLYIGFNGCSLKTEANLEV LKSIPSEKLMIETDAPWCGVKSTHAGSKYIKTSFPTKKKWENGHCLKDRNEPCHIIQILEIMSA VRDEDPLELANTLYNNTIKIFFS hide sequence

RefSeq Acc Id:	XP_013363369 ⟸ XM_013507915
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UMU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIERAVQIGVKKFMITGGDLQDSKEALQLA QTKDMFFSTVGCHPTRCGEFEKNNPDLYLNELLDLAENNKGKVVAIGECGLDFDRLQFCPKDIQ LKYFEKQFELSEQTKLPMFLHCRNSHDEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALTDLDLY IGFNGWYVVSSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIKTSFPTKKKWENGH CLKDRNEPCHIM hide sequence

RefSeq Acc Id:

ENSCLAP00000000720 ⟸ ENSCLAT00000000755

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000573	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000755	ENTREZGENE
	ENSCLAT00000000755.1	UniProtKB/TrEMBL
Gene3D-CATH	Metal-dependent hydrolases	UniProtKB/TrEMBL
InterPro	DNase_TatD-rel_CS	UniProtKB/TrEMBL
	Metal_Hydrolase	UniProtKB/TrEMBL
	TatD_family	UniProtKB/TrEMBL
NCBI Gene	Tatdn1	ENTREZGENE
PANTHER	DEOXYRIBONUCLEASE TATDN1-RELATED	UniProtKB/TrEMBL
	TATD FAMILY DEOXYRIBONUCLEASE	UniProtKB/TrEMBL
Pfam	TatD_DNase	UniProtKB/TrEMBL
PIRSF	DNase_TatD	UniProtKB/TrEMBL
PROSITE	TATD_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51556	UniProtKB/TrEMBL
UniProt	A0A8C2UMU4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD