WDR76 (WD repeat domain 76) - Rat Genome Database

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Gene: WDR76 (WD repeat domain 76) Sus scrofa
Analyze
Symbol: WDR76
Name: WD repeat domain 76
RGD ID: 13904387
Description: ENCODES a protein that exhibits enzyme binding (inferred); INVOLVED IN DNA damage response (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN heterochromatin (inferred); nucleus (inferred); site of DNA damage (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 76
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,654,178 - 127,741,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,651,765 - 127,741,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,482,379 - 142,570,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WDR76
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,654,178 - 127,741,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,651,765 - 127,741,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,482,379 - 142,570,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR76
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,827,002 - 43,868,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,826,980 - 43,868,412 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,119,200 - 44,160,610 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,906,500 - 41,946,502 (+)NCBINCBI36Build 36hg18NCBI36
Celera1521,008,572 - 21,050,076 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,941,959 - 20,983,344 (+)NCBIHuRef
CHM1_11544,237,364 - 44,278,868 (+)NCBICHM1_1
T2T-CHM13v2.01541,634,360 - 41,675,772 (+)NCBIT2T-CHM13v2.0
Wdr76
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,337,204 - 121,375,341 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,337,204 - 121,375,341 (+)EnsemblGRCm39 Ensembl
GRCm382121,506,723 - 121,544,860 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,506,723 - 121,544,860 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,332,459 - 121,370,596 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,198,197 - 121,237,626 (+)NCBIMGSCv36mm8
MGSCv362122,475,946 - 122,511,036 (+)NCBIMGSCv36mm8
Celera2122,653,110 - 122,692,296 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.41NCBI
Wdr76
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,910,500 - 128,945,241 (+)NCBIGRCr8
mRatBN7.23108,456,784 - 108,491,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,456,815 - 108,490,840 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03113,445,498 - 113,479,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,448,877 - 113,478,215 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,985,627 - 120,019,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,285,809 - 108,317,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,189,097 - 108,218,436 (+)NCBI
Celera3107,357,864 - 107,391,829 (+)NCBICelera
Cytogenetic Map3q35NCBI
Wdr76
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,279,835 - 10,335,521 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,280,112 - 10,337,963 (+)NCBIChiLan1.0ChiLan1.0
WDR76
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,078,643 - 33,120,144 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,240,375 - 37,281,876 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,786,956 - 22,828,496 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,877,721 - 40,918,519 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,877,721 - 40,918,519 (+)Ensemblpanpan1.1panPan2
WDR76
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,559,427 - 10,611,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,561,515 - 10,609,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,617,777 - 10,669,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,695,926 - 10,748,177 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,698,029 - 10,796,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,605,046 - 10,657,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,726,999 - 10,779,589 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,846,709 - 10,899,024 (+)NCBIUU_Cfam_GSD_1.0
Wdr76
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,030,229 - 89,077,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,878,584 - 6,923,921 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,878,350 - 6,923,951 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR76
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,178,407 - 39,222,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,176,535 - 39,223,993 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,772,740 - 101,816,880 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr76
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,846,384 - 10,907,017 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,844,275 - 10,947,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WDR76
1819 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000051118   ⟹   ENSSSCP00000034436
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1127,654,178 - 127,741,354 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000060049   ⟹   ENSSSCP00000056260
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1127,652,896 - 127,741,354 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000064642   ⟹   ENSSSCP00000036163
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1127,652,887 - 127,741,332 (-)Ensembl
RefSeq Acc Id: XM_003121544   ⟹   XP_003121592
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,651,765 - 127,741,302 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005659669   ⟹   XP_005659726
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,652,119 - 127,741,355 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013993070   ⟹   XP_013848524
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,652,119 - 127,741,356 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021096554   ⟹   XP_020952213
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,652,119 - 127,741,357 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021096563   ⟹   XP_020952222
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,652,119 - 127,741,325 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021096581   ⟹   XP_020952240
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,651,765 - 127,741,349 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021096582   ⟹   XP_020952241
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,652,119 - 127,741,304 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020952240   ⟸   XM_021096581
- Peptide Label: isoform X3
- UniProtKB: A0A4X1VBN5 (UniProtKB/TrEMBL),   A0A8D0XZ23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003121592   ⟸   XM_003121544
- Peptide Label: isoform X2
- UniProtKB: A0A8D0XZ23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020952213   ⟸   XM_021096554
- Peptide Label: isoform X1
- UniProtKB: A0A286ZYR9 (UniProtKB/TrEMBL),   A0A8D0T6R0 (UniProtKB/TrEMBL),   A0A286ZXB8 (UniProtKB/TrEMBL),   A0A8D2BDE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013848524   ⟸   XM_013993070
- Peptide Label: isoform X2
- UniProtKB: A0A8D0XZ23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659726   ⟸   XM_005659669
- Peptide Label: isoform X3
- UniProtKB: A0A4X1VBN5 (UniProtKB/TrEMBL),   A0A8D0XZ23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020952222   ⟸   XM_021096563
- Peptide Label: isoform X2
- UniProtKB: A0A8D0XZ23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020952241   ⟸   XM_021096582
- Peptide Label: isoform X4
- UniProtKB: A0A8D0XZ23 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000036163   ⟸   ENSSSCT00000064642
Ensembl Acc Id: ENSSSCP00000056260   ⟸   ENSSSCT00000060049
Ensembl Acc Id: ENSSSCP00000034436   ⟸   ENSSSCT00000051118


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004695 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025069937 UniProtKB/TrEMBL
  ENSSSCG00030067846 UniProtKB/TrEMBL
  ENSSSCG00035040884 UniProtKB/TrEMBL
  ENSSSCG00045025147 UniProtKB/TrEMBL
  ENSSSCG00050013483 UniProtKB/TrEMBL
  ENSSSCG00055029201 UniProtKB/TrEMBL
  ENSSSCG00060021860 UniProtKB/TrEMBL
  ENSSSCG00065040956 UniProtKB/TrEMBL
  ENSSSCG00070023207 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000051118 ENTREZGENE
  ENSSSCT00000051118.3 UniProtKB/TrEMBL
  ENSSSCT00025096046.1 UniProtKB/TrEMBL
  ENSSSCT00025096287.1 UniProtKB/TrEMBL
  ENSSSCT00030094856.1 UniProtKB/TrEMBL
  ENSSSCT00035054321.1 UniProtKB/TrEMBL
  ENSSSCT00035054326.1 UniProtKB/TrEMBL
  ENSSSCT00045042868.1 UniProtKB/TrEMBL
  ENSSSCT00045042995.1 UniProtKB/TrEMBL
  ENSSSCT00050018193.1 UniProtKB/TrEMBL
  ENSSSCT00055057972.1 UniProtKB/TrEMBL
  ENSSSCT00060029642.1 UniProtKB/TrEMBL
  ENSSSCT00060029649.1 UniProtKB/TrEMBL
  ENSSSCT00065056046.1 UniProtKB/TrEMBL
  ENSSSCT00065056051.1 UniProtKB/TrEMBL
  ENSSSCT00065056057.1 UniProtKB/TrEMBL
  ENSSSCT00065056060.1 UniProtKB/TrEMBL
  ENSSSCT00070046287.1 UniProtKB/TrEMBL
  ENSSSCT00070046304.1 UniProtKB/TrEMBL
  ENSSSCT00070046312.1 UniProtKB/TrEMBL
  ENSSSCT00070046324.1 UniProtKB/TrEMBL
  ENSSSCT00070046328.1 UniProtKB/TrEMBL
  ENSSSCT00070046329.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WD_repeat_DNA-damage-binding UniProtKB/TrEMBL
NCBI Gene WDR76 ENTREZGENE
PANTHER PTHR14773:SF0 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A286ZSI8_PIG UniProtKB/TrEMBL
  A0A286ZXB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A286ZYR9 ENTREZGENE
  A0A4X1V864_PIG UniProtKB/TrEMBL
  A0A4X1V880_PIG UniProtKB/TrEMBL
  A0A4X1VBN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VEA6_PIG UniProtKB/TrEMBL
  A0A8D0T6R0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XZ23 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BDE8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZYR9 UniProtKB/TrEMBL
VGNC ID VGNC:94941 ENTREZGENE