Wdr76 (WD repeat domain 76) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Wdr76 (WD repeat domain 76) Heterocephalus glaber
Analyze
Symbol: Wdr76
Name: WD repeat domain 76
RGD ID: 18916415
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN DNA damage response (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN heterochromatin (ortholog); nucleus (ortholog); site of DNA damage (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 76
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,846,384 - 10,907,017 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,844,275 - 10,947,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wdr76
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,846,384 - 10,907,017 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,844,275 - 10,947,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WDR76
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,827,002 - 43,868,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,826,980 - 43,868,412 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,119,200 - 44,160,610 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,906,500 - 41,946,502 (+)NCBINCBI36Build 36hg18NCBI36
Celera1521,008,572 - 21,050,076 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,941,959 - 20,983,344 (+)NCBIHuRef
CHM1_11544,237,364 - 44,278,868 (+)NCBICHM1_1
T2T-CHM13v2.01541,634,360 - 41,675,772 (+)NCBIT2T-CHM13v2.0
Wdr76
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,337,204 - 121,375,341 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,337,204 - 121,375,341 (+)EnsemblGRCm39 Ensembl
GRCm382121,506,723 - 121,544,860 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,506,723 - 121,544,860 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,332,459 - 121,370,596 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,198,197 - 121,237,626 (+)NCBIMGSCv36mm8
MGSCv362122,475,946 - 122,511,036 (+)NCBIMGSCv36mm8
Celera2122,653,110 - 122,692,296 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.41NCBI
Wdr76
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,910,500 - 128,945,241 (+)NCBIGRCr8
mRatBN7.23108,456,784 - 108,491,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,456,815 - 108,490,840 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03113,445,498 - 113,479,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,448,877 - 113,478,215 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,985,627 - 120,019,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,285,809 - 108,317,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,189,097 - 108,218,436 (+)NCBI
Celera3107,357,864 - 107,391,829 (+)NCBICelera
Cytogenetic Map3q35NCBI
Wdr76
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,279,835 - 10,335,521 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,280,112 - 10,337,963 (+)NCBIChiLan1.0ChiLan1.0
WDR76
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,078,643 - 33,120,144 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,240,375 - 37,281,876 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,786,956 - 22,828,496 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,877,721 - 40,918,519 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,877,721 - 40,918,519 (+)Ensemblpanpan1.1panPan2
WDR76
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,559,427 - 10,611,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,561,515 - 10,609,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,617,777 - 10,669,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,695,926 - 10,748,177 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,698,029 - 10,796,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,605,046 - 10,657,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,726,999 - 10,779,589 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,846,709 - 10,899,024 (+)NCBIUU_Cfam_GSD_1.0
Wdr76
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,030,229 - 89,077,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,878,584 - 6,923,921 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,878,350 - 6,923,951 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR76
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,654,178 - 127,741,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,651,765 - 127,741,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,482,379 - 142,570,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR76
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,178,407 - 39,222,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,176,535 - 39,223,993 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,772,740 - 101,816,880 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000009165   ⟹   ENSHGLP00000009067
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480410,846,384 - 10,907,017 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009166   ⟹   ENSHGLP00000009068
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480410,847,213 - 10,907,017 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009167   ⟹   ENSHGLP00000009069
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480410,847,213 - 10,907,017 (+)Ensembl
RefSeq Acc Id: XM_021241883   ⟹   XP_021097542
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,844,276 - 10,904,063 (+)NCBI
RefSeq Acc Id: XM_021241884   ⟹   XP_021097543
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,844,275 - 10,904,063 (+)NCBI
RefSeq Acc Id: XM_021241885   ⟹   XP_021097544
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,844,275 - 10,919,522 (+)NCBI
RefSeq Acc Id: XM_021241886   ⟹   XP_021097545
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,844,276 - 10,947,234 (+)NCBI
RefSeq Acc Id: XM_021241887   ⟹   XP_021097546
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,844,275 - 10,919,522 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021097542 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097543 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097544 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097545 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097546 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009067
Reference Protein Sequences
RefSeq Acc Id: XP_021097544   ⟸   XM_021241885
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021097546   ⟸   XM_021241887
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021097543   ⟸   XM_021241884
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021097545   ⟸   XM_021241886
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021097542   ⟸   XM_021241883
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000009068   ⟸   ENSHGLT00000009166
RefSeq Acc Id: ENSHGLP00000009067   ⟸   ENSHGLT00000009165
RefSeq Acc Id: ENSHGLP00000009069   ⟸   ENSHGLT00000009167


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006513 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009165 ENTREZGENE
NCBI Gene Wdr76 ENTREZGENE