WDR76 (WD repeat domain 76) - Rat Genome Database

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Gene: WDR76 (WD repeat domain 76) Canis lupus familiaris
Analyze
Symbol: WDR76
Name: WD repeat domain 76
RGD ID: 12062014
Description: ENCODES a protein that exhibits DNA binding (inferred); enzyme binding (inferred); INVOLVED IN DNA damage response (inferred); regulation of DNA damage checkpoint (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN heterochromatin (inferred); nucleus (inferred); site of DNA damage (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 76
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,559,427 - 10,611,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,561,515 - 10,609,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,617,777 - 10,669,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,695,926 - 10,748,177 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,698,029 - 10,796,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,605,046 - 10,657,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,726,999 - 10,779,589 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,846,709 - 10,899,024 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WDR76
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,559,427 - 10,611,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,561,515 - 10,609,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,617,777 - 10,669,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,695,926 - 10,748,177 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,698,029 - 10,796,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,605,046 - 10,657,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,726,999 - 10,779,589 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,846,709 - 10,899,024 (+)NCBIUU_Cfam_GSD_1.0
WDR76
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,827,002 - 43,868,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,826,980 - 43,868,412 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,119,200 - 44,160,610 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,906,500 - 41,946,502 (+)NCBINCBI36Build 36hg18NCBI36
Celera1521,008,572 - 21,050,076 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,941,959 - 20,983,344 (+)NCBIHuRef
CHM1_11544,237,364 - 44,278,868 (+)NCBICHM1_1
T2T-CHM13v2.01541,634,360 - 41,675,772 (+)NCBIT2T-CHM13v2.0
Wdr76
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,337,204 - 121,375,341 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,337,204 - 121,375,341 (+)EnsemblGRCm39 Ensembl
GRCm382121,506,723 - 121,544,860 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,506,723 - 121,544,860 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,332,459 - 121,370,596 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,198,197 - 121,237,626 (+)NCBIMGSCv36mm8
MGSCv362122,475,946 - 122,511,036 (+)NCBIMGSCv36mm8
Celera2122,653,110 - 122,692,296 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.41NCBI
Wdr76
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,910,500 - 128,945,241 (+)NCBIGRCr8
mRatBN7.23108,456,784 - 108,491,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,456,815 - 108,490,840 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03113,445,498 - 113,479,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,448,877 - 113,478,215 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,985,627 - 120,019,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,285,809 - 108,317,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,189,097 - 108,218,436 (+)NCBI
Celera3107,357,864 - 107,391,829 (+)NCBICelera
Cytogenetic Map3q35NCBI
Wdr76
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,279,835 - 10,335,521 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,280,112 - 10,337,963 (+)NCBIChiLan1.0ChiLan1.0
WDR76
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,078,643 - 33,120,144 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,240,375 - 37,281,876 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,786,956 - 22,828,496 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,877,721 - 40,918,519 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,877,721 - 40,918,519 (+)Ensemblpanpan1.1panPan2
Wdr76
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,030,229 - 89,077,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,878,584 - 6,923,921 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,878,350 - 6,923,951 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR76
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,654,178 - 127,741,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,651,765 - 127,741,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,482,379 - 142,570,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR76
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,178,407 - 39,222,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,176,535 - 39,223,993 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,772,740 - 101,816,880 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr76
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,846,384 - 10,907,017 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,844,275 - 10,947,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WDR76
606 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 5 5 16 6 6 12 8 10 6
Below cutoff 6 6 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014109623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_544653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000021308   ⟹   ENSCAFP00000019785
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3010,561,515 - 10,609,907 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845047051   ⟹   ENSCAFP00845036923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3010,698,029 - 10,796,383 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845047143   ⟹   ENSCAFP00845036994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3010,698,029 - 10,766,780 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845047261   ⟹   ENSCAFP00845037093
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3010,698,029 - 10,746,470 (+)Ensembl
RefSeq Acc Id: XM_014109623   ⟹   XP_013965098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13010,559,427 - 10,611,602 (+)NCBI
Dog10K_Boxer_Tasha3010,617,777 - 10,669,844 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038442158   ⟹   XP_038298086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03010,698,122 - 10,748,177 (+)NCBI
RefSeq Acc Id: XM_038442159   ⟹   XP_038298087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03010,697,979 - 10,748,177 (+)NCBI
RefSeq Acc Id: XM_038442160   ⟹   XP_038298088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03010,695,926 - 10,748,177 (+)NCBI
RefSeq Acc Id: XM_038461553   ⟹   XP_038317481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3010,619,983 - 10,669,844 (+)NCBI
RefSeq Acc Id: XM_038516632   ⟹   XP_038372560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13010,607,186 - 10,657,166 (+)NCBI
RefSeq Acc Id: XM_038516633   ⟹   XP_038372561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13010,607,041 - 10,657,166 (+)NCBI
RefSeq Acc Id: XM_038516634   ⟹   XP_038372562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13010,605,046 - 10,657,166 (+)NCBI
RefSeq Acc Id: XM_038580252   ⟹   XP_038436180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03010,848,854 - 10,899,024 (+)NCBI
RefSeq Acc Id: XM_038580253   ⟹   XP_038436181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03010,848,709 - 10,899,024 (+)NCBI
RefSeq Acc Id: XM_038580254   ⟹   XP_038436182
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03010,846,709 - 10,899,024 (+)NCBI
RefSeq Acc Id: XM_038644533   ⟹   XP_038500461
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03010,729,147 - 10,779,589 (+)NCBI
RefSeq Acc Id: XM_038644534   ⟹   XP_038500462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03010,729,002 - 10,779,589 (+)NCBI
RefSeq Acc Id: XM_038644535   ⟹   XP_038500463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03010,726,999 - 10,779,589 (+)NCBI
RefSeq Acc Id: XM_544653   ⟹   XP_544653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13010,561,444 - 10,611,602 (+)NCBI
Dog10K_Boxer_Tasha3010,619,840 - 10,669,844 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013965098   ⟸   XM_014109623
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L9R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_544653   ⟸   XM_544653
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PNW9 (UniProtKB/TrEMBL),   A0A8C0NJT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019785   ⟸   ENSCAFT00000021308
RefSeq Acc Id: XP_038372562   ⟸   XM_038516634
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038372561   ⟸   XM_038516633
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038372560   ⟸   XM_038516632
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038500463   ⟸   XM_038644535
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038500462   ⟸   XM_038644534
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500461   ⟸   XM_038644533
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038298088   ⟸   XM_038442160
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L9R2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298087   ⟸   XM_038442159
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PNW9 (UniProtKB/TrEMBL),   A0A8C0NJT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298086   ⟸   XM_038442158
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NJT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317481   ⟸   XM_038461553
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NJT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436182   ⟸   XM_038580254
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L9R2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436181   ⟸   XM_038580253
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NJT3 (UniProtKB/TrEMBL),   A0A8P0PNW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436180   ⟸   XM_038580252
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NJT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845036994   ⟸   ENSCAFT00845047143
RefSeq Acc Id: ENSCAFP00845036923   ⟸   ENSCAFT00845047051
RefSeq Acc Id: ENSCAFP00845037093   ⟸   ENSCAFT00845047261


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013431 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016281 UniProtKB/TrEMBL
  ENSCAFG00040020662 UniProtKB/TrEMBL
  ENSCAFG00845026697 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000021308.5 UniProtKB/TrEMBL
  ENSCAFT00000096275.1 UniProtKB/TrEMBL
  ENSCAFT00000102739.1 UniProtKB/TrEMBL
  ENSCAFT00000107625.1 UniProtKB/TrEMBL
  ENSCAFT00030029979.1 UniProtKB/TrEMBL
  ENSCAFT00040038380.1 UniProtKB/TrEMBL
  ENSCAFT00845047051.1 UniProtKB/TrEMBL
  ENSCAFT00845047143 ENTREZGENE
  ENSCAFT00845047143.1 UniProtKB/TrEMBL
  ENSCAFT00845047261.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene WDR76 ENTREZGENE
PANTHER UNCHARACTERIZED UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 76 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C0L9R2 ENTREZGENE
  A0A8C0NJT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQC2_CANLF UniProtKB/TrEMBL
  A0A8I3PV56_CANLF UniProtKB/TrEMBL
  A0A8I3PZC8_CANLF UniProtKB/TrEMBL
  A0A8P0PKK5_CANLF UniProtKB/TrEMBL
  A0A8P0PLF9_CANLF UniProtKB/TrEMBL
  A0A8P0PNW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SI99_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48388 ENTREZGENE