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Gene: VSX1 (visual system homeobox 1) Sus scrofa

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Symbol:

VSX1

Name:

visual system homeobox 1

RGD ID:

13878313

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN neuron development (inferred); neuron maturation (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Auditory Perceptual Disorders (ortholog); corneal dystrophy (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VSX1 (visual system homeobox 1)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Vsx1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Vsx1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vsx1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VSX1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VSX1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vsx1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VSX1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vsx1 (visual system homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,848,484 - 30,856,213 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	30,848,497 - 30,856,014 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	34,997,534 - 35,004,959 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX1	Pig	corneal dystrophy		ISO	VSX1 (Homo sapiens)	9068941	associated with Craniofacial Abnormalities more ...	RGD	PMID:15051220 and REF_RGD_ID:8657029
VSX1	Pig	corneal dystrophy		ISO	VSX1 (Homo sapiens)	9068941	KTCN1 more ...	RGD	PMID:11978762 and REF_RGD_ID:1599773
VSX1	Pig	Keratoconus 1	no_association	ISO	VSX1 (Homo sapiens)	9068941	DNA:missense mutations:cds:p.L159M more ...	RGD	PMID:18216574 and REF_RGD_ID:8657052
VSX1	Pig	Keratoconus 1	no_association	ISO	VSX1 (Homo sapiens)	9068941	DNA:missense mutation:cds:p.D144E (human)	RGD	PMID:17960127 and REF_RGD_ID:8657045

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX1	Pig	Craniofacial Anomalies and Anterior Segment Dysgenesis Syndrome		ISO	VSX1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Craniofacial anomalies and anterior segment dysgenesis syndrome	ClinVar	PMID:15051220 and PMID:25741868
VSX1	Pig	genetic disease		ISO	VSX1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868 and PMID:28492532
VSX1	Pig	keratoconus		ISO	VSX1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Keratoconus	ClinVar	PMID:23592923 more ...
VSX1	Pig	Keratoconus 1		ISO	VSX1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11978762 more ...
VSX1	Pig	long QT syndrome		ISO	VSX1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Long QT syndrome	ClinVar	PMID:26132555
VSX1	Pig	posterior polymorphous corneal dystrophy		ISO	VSX1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Posterior polymorphous corneal dystrophy	ClinVar	PMID:11978762 more ...
VSX1	Pig	posterior polymorphous corneal dystrophy 1		ISO	VSX1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11978762 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX1	Pig	Auditory Perceptual Disorders		ISO	VSX1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15051220
VSX1	Pig	corneal dystrophy		ISO	VSX1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:11978762
VSX1	Pig	Craniofacial Abnormalities		ISO	VSX1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15051220
VSX1	Pig	empty sella syndrome		ISO	VSX1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15051220
VSX1	Pig	Eye Abnormalities		ISO	VSX1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15051220
VSX1	Pig	retinal disease		ISO	VSX1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15051220

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX1	Pig	Craniofacial Anomalies and Anterior Segment Dysgenesis Syndrome		ISO	VSX1 (Homo sapiens)	7240710		OMIM
VSX1	Pig	Keratoconus 1		ISO	VSX1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX1	Pig	neuron development	involved_in	IBA	MGI:1890816 and PANTHER:PTN008613228	150520179		GO_Central	GO_REF:0000033
VSX1	Pig	neuron development	acts_upstream_of_or_within	IEA	UniProtKB:Q91V10 and ensembl:ENSMUSP00000039088	150520179		Ensembl	GO_REF:0000107
VSX1	Pig	neuron maturation	acts_upstream_of_or_within	IEA	UniProtKB:Q91V10 and ensembl:ENSMUSP00000039088	150520179		Ensembl	GO_REF:0000107
VSX1	Pig	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
VSX1	Pig	regulation of DNA-templated transcription	involved_in	IBA	PANTHER:PTN001550454 and ZFIN:ZDB-GENE-990415-205	150520179		GO_Central	GO_REF:0000033
VSX1	Pig	regulation of transcription by RNA polymerase II	involved_in	IEA	GO:0000981	150520179		GOC	GO_REF:0000108
VSX1	Pig	retinal bipolar neuron differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q91V10 and ensembl:ENSMUSP00000039088	150520179		Ensembl	GO_REF:0000107
VSX1	Pig	visual perception	acts_upstream_of_or_within	IEA	UniProtKB:Q91V10 and ensembl:ENSMUSP00000039088	150520179		Ensembl	GO_REF:0000107
VSX1	Pig	visual perception	involved_in	IEA	UniProtKB-KW:KW-0844	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX1	Pig	nucleus	located_in	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
VSX1	Pig	nucleus	is_active_in	IBA	MGI:1890816 and PANTHER:PTN001550454	150520179		GO_Central	GO_REF:0000033
VSX1	Pig	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
VSX1	Pig	nucleus	located_in	IEA	UniProtKB:Q91V10 and ensembl:ENSMUSP00000039088	150520179		Ensembl	GO_REF:0000107
VSX1	Pig	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX1	Pig	DNA binding	enables	IEA	UniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371	150520179		UniProt	GO_REF:0000043
VSX1	Pig	DNA binding	enables	IEA	InterPro:IPR001356	150520179		InterPro	GO_REF:0000002
VSX1	Pig	DNA binding	enables	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
VSX1	Pig	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
VSX1	Pig	protein binding	enables	ISO	UniProtKB:P46379-2	9068941	PMID:32814053	IntAct	PMID:32814053
VSX1	Pig	sequence-specific double-stranded DNA binding	enables	IEA	UniProtKB:Q9NZR4 and ensembl:ENSP00000365899	150520179		Ensembl	GO_REF:0000107
VSX1	Pig	transcription cis-regulatory region binding	enables	IBA	PANTHER:PTN001550454 and ZFIN:ZDB-GENE-990415-205	150520179		GO_Central	GO_REF:0000033

PMID:22301074	PMID:30032202

VSX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,848,484 - 30,856,213 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	30,848,497 - 30,856,014 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	34,997,534 - 35,004,959 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VSX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	25,070,880 - 25,082,141 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	25,070,885 - 25,082,141 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	25,051,516 - 25,062,777 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	25,004,099 - 25,010,767 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	25,007,194 - 25,010,767	NCBI
Celera	20	25,129,909 - 25,136,577 (-)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	25,008,800 - 25,020,295 (-)	NCBI		HuRef
CHM1_1	20	25,052,457 - 25,063,935 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	25,127,147 - 25,146,758 (-)	NCBI		T2T-CHM13v2.0

Vsx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	150,522,622 - 150,531,057 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	150,522,622 - 150,531,280 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	150,680,702 - 150,689,137 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	150,680,702 - 150,689,360 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	150,506,438 - 150,514,873 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	150,372,143 - 150,380,578 (-)	NCBI		MGSCv36	mm8
Celera	2	151,915,696 - 151,924,136 (-)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	74.74	NCBI

Vsx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	159,974,693 - 159,982,292 (-)	NCBI		GRCr8
mRatBN7.2	3	139,514,270 - 139,521,869 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	139,514,270 - 139,521,869 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	143,410,661 - 143,418,257 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	151,994,390 - 152,001,986 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	149,742,529 - 149,750,127 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	146,484,235 - 146,494,757 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	146,484,238 - 146,491,837 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	152,843,269 - 152,850,868 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	141,322,816 - 141,330,415 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	141,229,916 - 141,235,812 (-)	NCBI
Celera	3	138,276,455 - 138,284,054 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

Vsx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	31,175,452 - 31,180,655 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	31,174,155 - 31,180,718 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	25,940,336 - 25,956,078 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	25,937,169 - 25,952,911 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	25,011,149 - 25,025,545 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	25,361,211 - 25,372,705 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	25,361,216 - 25,372,705 (-)	Ensembl	panpan1.1		panPan2

VSX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	1,268,465 - 1,274,854 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	1,269,139 - 1,274,784 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	1,298,714 - 1,304,409 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	1,511,603 - 1,517,296 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	1,511,653 - 1,517,296 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	1,326,829 - 1,332,519 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	1,456,977 - 1,462,672 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	1,440,015 - 1,445,745 (-)	NCBI		UU_Cfam_GSD_1.0

Vsx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	147,290,512 - 147,297,747 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	710,671 - 718,595 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	710,917 - 718,205 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023667624	13,463 - 18,381 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vsx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624939	375,749 - 381,823 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in VSX1
216 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	mesenchyme	mesoderm	nervous system
1	1	1	1


RefSeq Transcripts	XM_003359919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP565328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000025097 ⟹ ENSSSCP00000023121

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	30,848,484 - 30,856,213 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000073186 ⟹ ENSSSCP00000069305

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	30,852,021 - 30,856,213 (-)	Ensembl

RefSeq Acc Id:

XM_003359919 ⟹ XP_003359967

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	17	30,848,497 - 30,856,014 (-)	NCBI

Sequence:

show sequence

ATGACTGGCCGGGACGCGCTTTCCGACGGGTGTGCCAGGAGCAGGGCGCTGGTGCCCGGAGGCCCGCCCACTGGCTCGCGCCCCCGGGGCTTCGCCATCACTGACTTGCTGGGCCTGGAGGCCGAGCT
GCCTGCACCTGCAGGCCCTGGGCCGGGATCCTGCTGCGAAGGCCCCGCGGCTGCCCCCTGCGCCGGTCCAGGGCTCGGGGACTCTGGCTTGGCGCGCGGGGCCCTCCCGCTGGGATTCGGCCTCCTCT
GCAGCTTCGGTGCGCAGCCCCCTGCGGCTGCCGGGGCGCCCTGCCTGCTTCTAGCCGATGTGCCGTTCCTGCCGCCCGAGGGGCCTGAGCCCCCCGCCCCGCACGTCCTCGGCCGCTCACCGCCCACG
AGCATCCGTCAGAAGCGCAGCGAGAGCGTCTCGACGTCCGAAGAGGACAGCCTGCCTGAAGATAGGAGTGACCTGAAGTTGCCCCCCACCCCCGGCAAGAGGAAGAAGCGAAGGCACAGGACGGTTTT
CACTGCCCACCAGCTGGAGGAGCTGGAGAAGGCCTTCAGCGAGGCCCACTACCCCGACGTGTATGCCCGGGAAATGCTGGCTGTGAAGACTGAGCTCCCGGAAGACCGGATACAGGTCTGGTTTCAGA
ATCGGAGGGCCAAGTGGCGCAAGCGGGAGAAGCGTTGGGGTGGCAGCAGCGTGATGGCCGAGTACGGGCTCTACGGGGCGATGGTGCGACACTGCATCCCACCACCTGACTCTGTCCTCAGCTCTGCA
GAGGGCGGCCTGCTGGGCTCCTGTGCGCCCTGGCTCCTGGGGATGCATAAAAAATCCACAGGGATGATAAAGAAAGCAGAAAGTGAAGAAAAGCTGGCAGGACTCTGGGGCTCTGACCACCTCAAGGA
AGGTTTTAGCCCGCTTCAGGCAGGACCCCAGAGGGGCTCAGATGAAGGCAGCCCTGAAAGTGGCCAAGATGTGGCCATGGATCTCTCCAACTCCACTCGGCAGGAGGCCAAGAGAGCACCGCAGGAGG
CCGGGACCCAAGGCTGTTCAGACTCTGAGGAGCTAAAGGGGCTCCAGCCCAGGAAGGGGGAGGCCTTATGAGGCCACAGCTCCTCCCCATCAGGGCTGGAAATGTGCACATTCCTTACCGCTGTTTTT
GAAAGATGAAAGTTGTGGAAGACAGTTGGAGTTTTTAAGTGTCAGGACACAATGCAATGCCATTTGCTTTAAGAAGACAAATGGTGACCTATGGTAAAATTCCATTTCATTCTATAATGGAAATCACT
CCTTAAAGGCAGGTGAACCAGTTAATTTGGTGTAAAACTTCTCTTCTCTTCTGTAGAACCTGAGGAGGGAGGATTTCAAGTCCAAAACCCATTTTCACTGCCAGACAGCCTGAGATCTGGTTCACAAT
ACTGCAGATTAACAGGTTAAGTCCTTACAAGGAATCCGACTGATTAGCAGATTAAGTCGGATGTTCTTACCTGGAATCAGAAGATACAAAATTATTTAATGGGCAGAGAATCAAATAGTTTCATAAAT
AGTGAAGACCTTGTGCGGACCTCAAATGAATGAAATTTAGCATCTTTACCTTGAACTTGCTTTGGATGTTGCCATTCTCTTAGGCAATAATTCTGTGTCCTCGGAACTCTTCCGCAAAGAAAGCCCAC
CGTCCCTCCCCTTCCCAAACAGCTCGGGGCCAAATTGGAACAACCGTTGAATATTTGTAAACAGTGTGTTAAGGTCAGACCAGGCTTCTTGGTTTTTTTTTAAATTTATGTTTGAGAGCACTTTAGTG
ACTTGATTTCCTGAATGTTTCCTTGCCTGTATTTCCTTTGCCACTTATTTATTATTTAAAAATAAACGAAGCA

hide sequence


Protein RefSeqs	XP_003359967	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000023121
	ENSSSCP00000023121.2
	ENSSSCP00000069305.1
	ENSSSCP00015011531.1
	ENSSSCP00025032856.1
	ENSSSCP00030029956.1
	ENSSSCP00030029963.1
	ENSSSCP00035026046.1
	ENSSSCP00035026048.1
	ENSSSCP00045022853.1
	ENSSSCP00045022910.1
	ENSSSCP00050014398.1
	ENSSSCP00055022244.1
	ENSSSCP00055022275.1
	ENSSSCP00065026033.1
	ENSSSCP00065026037.1
	ENSSSCP00070036584.1
	ENSSSCP00070036591.1

RefSeq Acc Id:

XP_003359967 ⟸ XM_003359919

- UniProtKB:

I3LGC8 (UniProtKB/TrEMBL), A0A4X1V1M7 (UniProtKB/TrEMBL), A0A8D0N0L3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTGRDALSDGCARSRALVPGGPPTGSRPRGFAITDLLGLEAELPAPAGPGPGSCCEGPAAAPCAGPGLGDSGLARGALPLGFGLLCSFGAQPPAAAGAPCLLLADVPFLPPEGPEPPAPHVLGRSPPT
SIRQKRSESVSTSEEDSLPEDRSDLKLPPTPGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPPPDSVLSSA
EGGLLGSCAPWLLGMHKKSTGMIKKAESEEKLAGLWGSDHLKEGFSPLQAGPQRGSDEGSPESGQDVAMDLSNSTRQEAKRAPQEAGTQGCSDSEELKGLQPRKGEAL

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Ensembl Acc Id:

ENSSSCP00000023121 ⟸ ENSSSCT00000025097

Ensembl Acc Id:

ENSSSCP00000069305 ⟸ ENSSSCT00000073186

Protein Domains

CVC Homeobox

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000023887	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015022175	UniProtKB/TrEMBL
	ENSSSCG00025055385	UniProtKB/TrEMBL
	ENSSSCG00030046978	UniProtKB/TrEMBL
	ENSSSCG00035048278	UniProtKB/TrEMBL
	ENSSSCG00045019328	UniProtKB/TrEMBL
	ENSSSCG00050025675	UniProtKB/TrEMBL
	ENSSSCG00055014159	UniProtKB/TrEMBL
	ENSSSCG00065043913	UniProtKB/TrEMBL
	ENSSSCG00070021874	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000025097	ENTREZGENE
	ENSSSCT00000025097.4	UniProtKB/TrEMBL
	ENSSSCT00000073186.2	UniProtKB/TrEMBL
	ENSSSCT00015029351.1	UniProtKB/TrEMBL
	ENSSSCT00025075800.1	UniProtKB/TrEMBL
	ENSSSCT00030065528.1	UniProtKB/TrEMBL
	ENSSSCT00030065541.1	UniProtKB/TrEMBL
	ENSSSCT00035064311.1	UniProtKB/TrEMBL
	ENSSSCT00035064315.1	UniProtKB/TrEMBL
	ENSSSCT00045032963.1	UniProtKB/TrEMBL
	ENSSSCT00045033053.1	UniProtKB/TrEMBL
	ENSSSCT00050034575.1	UniProtKB/TrEMBL
	ENSSSCT00055027931.1	UniProtKB/TrEMBL
	ENSSSCT00055027965.1	UniProtKB/TrEMBL
	ENSSSCT00065060049.1	UniProtKB/TrEMBL
	ENSSSCT00065060055.1	UniProtKB/TrEMBL
	ENSSSCT00070043466.1	UniProtKB/TrEMBL
	ENSSSCT00070043474.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CVC	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_domain	UniProtKB/TrEMBL
KEGG Report	ssc:100620386	UniProtKB/TrEMBL
NCBI Gene	VSX1	ENTREZGENE
PANTHER	CEH-10 HOMEODOMAIN-CONTAINING HOMOLOG	UniProtKB/TrEMBL
	VISUAL SYSTEM HOMEOBOX 1	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
PROSITE	CVC	UniProtKB/TrEMBL
	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A4X1V1M7	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1V4T0_PIG	UniProtKB/TrEMBL
	A0A5G2R555_PIG	UniProtKB/TrEMBL
	A0A8D0N0L3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0WZ21_PIG	UniProtKB/TrEMBL
	A0A8D0X6E9_PIG	UniProtKB/TrEMBL
	A0A8D1HQS9_PIG	UniProtKB/TrEMBL
	A0A8D1QT67_PIG	UniProtKB/TrEMBL
	A0A8D1QUH5_PIG	UniProtKB/TrEMBL
	I3LGC8	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:95566	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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