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Gene: VSX1 (visual system homeobox 1) Homo sapiens
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Symbol: VSX1
Name: visual system homeobox 1
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific; chromatin binding activity; and transcription regulatory region DNA binding activity. Predicted to be involved in neuron development and regulation of transcription, DNA-templated. Predicted to localize to nuclear chromatin. Implicated in corneal dystrophy; keratoconus; and posterior polymorphous corneal dystrophy 1.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CAASDS; homeodomain protein RINX; KTCN; KTCN1; PPCD; PPCD1; PPD; retinal inner nuclear layer homeobox protein; RINX; transcription factor VSX1; visual system homeobox 1 homolog, CHX10-like
Orthologs:
Mus musculus (house mouse) : Vsx1 (visual system homeobox 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Vsx1 (visual system homeobox 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vsx1 (visual system homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : VSX1 (visual system homeobox 1)
Canis lupus familiaris (dog) : VSX1 (visual system homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vsx1 (visual system homeobox 1)
Sus scrofa (pig) : VSX1 (visual system homeobox 1)
Heterocephalus glaber (naked mole-rat) : Vsx1 (visual system homeobox 1)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38 Ensembl2025,070,885 - 25,082,365 (-)EnsemblGRCh38hg38GRCh38
GRCh382025,069,940 - 25,082,141 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372025,051,521 - 25,063,015 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362025,004,099 - 25,010,767 (-)NCBINCBI36hg18NCBI36
Build 342025,007,194 - 25,010,767NCBI
Celera2025,129,909 - 25,136,577 (-)NCBI
Cytogenetic Map20p11.21NCBI
HuRef2025,008,800 - 25,020,295 (-)NCBIHuRef
CHM1_12025,052,457 - 25,063,935 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Promoters
Clinical Variants

Additional Information

External Database Links
 
More on VSX1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1313832
Created: 2005-01-12
Species: Homo sapiens
Last Modified: 2020-05-05
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.