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Gene: SAMSN1 (SAM domain, SH3 domain and nuclear localization signals 1) Sus scrofa

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Symbol:

SAMSN1

Name:

SAM domain, SH3 domain and nuclear localization signals 1

RGD ID:

13878239

Description:

INVOLVED IN negative regulation of adaptive immune response (ortholog); negative regulation of peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SAM domain-containing protein SAMSN-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	179,428,779 - 179,556,447 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	179,431,494 - 179,509,359 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	189,668,581 - 189,798,767 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

COVID-19 (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of adaptive immune response (ISO)

negative regulation of B cell activation (IBA)

negative regulation of peptidyl-tyrosine phosphorylation (ISO)

regulation of intracellular signal transduction (IBA)

Cellular Component

cytoplasm (IBA)

cytosol (ISO)

nucleus (IBA,ISO)

Molecular Function

phosphotyrosine residue binding (IBA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074

Genomics

Comparative Map Data

SAMSN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	179,428,779 - 179,556,447 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	179,431,494 - 179,509,359 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	189,668,581 - 189,798,767 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SAMSN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	14,485,228 - 14,659,417 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	14,485,228 - 14,658,821 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	15,857,549 - 16,031,738 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	14,779,420 - 14,840,535 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	14,779,419 - 14,840,535	NCBI
Celera	21	1,027,395 - 1,088,492 (-)	NCBI		Celera
Cytogenetic Map	21	q11.2	NCBI
HuRef	21	1,240,511 - 1,338,520 (-)	NCBI		HuRef
CHM1_1	21	15,418,089 - 15,516,274 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	12,840,563 - 13,014,732 (-)	NCBI		T2T-CHM13v2.0

Samsn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	75,655,682 - 75,706,154 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	75,655,681 - 75,819,169 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	75,858,794 - 75,909,266 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	75,858,793 - 76,022,281 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	75,859,039 - 75,909,511 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	75,741,474 - 75,791,946 (-)	NCBI		MGSCv36	mm8
Celera	16	76,082,014 - 76,131,797 (-)	NCBI		Celera
Cytogenetic Map	16	C3.1	NCBI
cM Map	16	43.36	NCBI

Samsn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	27,971,565 - 28,021,944 (-)	NCBI		GRCr8
mRatBN7.2	11	14,484,523 - 14,534,900 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	14,483,893 - 14,534,900 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	23,110,271 - 23,160,500 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	15,836,651 - 15,886,876 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	15,004,507 - 15,054,732 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	14,252,088 - 14,405,825 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	14,253,848 - 14,304,725 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	17,910,040 - 17,960,596 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	14,633,494 - 14,683,788 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	14,633,493 - 14,683,788 (-)	NCBI
Celera	11	14,497,563 - 14,547,805 (-)	NCBI		Celera
Cytogenetic Map	11	p11	NCBI

Samsn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	16,329,288 - 16,378,062 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	16,329,838 - 16,377,763 (-)	NCBI	ChiLan1.0	ChiLan1.0

SAMSN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	10,979,161 - 11,149,950 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	5,812,917 - 5,983,746 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	1,228,632 - 1,399,331 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	14,595,688 - 14,703,600 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	14,595,688 - 14,711,613 (-)	Ensembl	panpan1.1		panPan2

SAMSN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	11,485,964 - 11,756,275 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	11,486,649 - 11,754,607 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	11,497,136 - 11,766,896 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	11,510,963 - 11,781,247 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	11,510,981 - 11,781,296 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	11,484,017 - 11,753,288 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	11,521,549 - 11,791,326 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	11,917,912 - 12,187,664 (-)	NCBI		UU_Cfam_GSD_1.0

Samsn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	12,580,579 - 12,671,795 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936505	7,499,719 - 7,550,679 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936505	7,499,801 - 7,591,566 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103218266
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	77,870,604 - 78,038,215 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	77,937,984 - 78,038,199 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	75,882,004 - 76,050,679 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Samsn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	2,977,395 - 3,022,694 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	2,977,401 - 3,022,606 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SAMSN1
1835 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021070815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021070816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021070817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK230487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU466325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBZA01000567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01008172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000043622 ⟹ ENSSSCP00000043292

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	179,428,779 - 179,478,957 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000061724 ⟹ ENSSSCP00000040072

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	179,428,779 - 179,478,876 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000067892 ⟹ ENSSSCP00000071368

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	179,431,498 - 179,478,957 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000070236 ⟹ ENSSSCP00000059651

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	179,428,779 - 179,556,447 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000086955 ⟹ ENSSSCP00000069786

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	179,431,497 - 179,478,980 (-)	Ensembl

RefSeq Acc Id:

XM_021070815 ⟹ XP_020926474

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	179,431,494 - 179,479,015 (-)	NCBI

Sequence:

show sequence

CTGACCAAAAGAGGAAGTGGCAGGTTACTAGTCTTAAACTTATCTGCAGCTGTACATCATAAAC
AGCAAACTGGTGACTGCCTACAGTTGCTTCTGTAACAACAGAAAGTGTACTCACTCGGAGTAGT
CTGAATTCAAAATGCTGAAGAGAAAACCATCCAATGTTTCAGAGAAGGAGAAACATCAGAAACC
AAAGCGCAGCAGCAGTTTTGGGAATTTTGATCGTTTTCGGAATAATTCCATATCAAAACCAGAT
GATTCAACTGGGGTAAATGAAGGGGAACCCACAAATGAAAGTGGAGAACAAAACAAAACTTCAA
ATAATGGAGGAGGCTTAGGCAAAAAAATGAGAGCTATTTCCTGGACAATGAAGAAAAAAGCGGG
TAAAAAGTACATCAAAGCCCTTTCTGAGGAAAAGGATGAGGAAGATGGAGAAGATGCCCTCCCG
TATCGGAATAGTGACCCCATGATTGGAAACCATACAGAGAAGGGCTCCCTGAAAGCCAGTGACT
CCATGGACAGCCTCTACAGTGGGCAGAGCTCATCAAGTGGTATAACAAGCTGTTCAGATGGTAC
AAGTAACCGGGACAGCTTTCGGCTTGATGATGATAGCCCCTACTCAGGACCCTTCTGTGGCCGT
GCCAGAGTACATACGGATTTCACACCAAGTCCCTATGACACTGACTCCCTCAAAATCAAGAAAG
GAGATATCATAGACATTATCTGCAAAACGCCAATGGGGATGTGGACTGGAATGCTGAACAATAA
AGTGGGAAACTTCAAATTTATTTATGTCGATGTCATCTCAGAAGAAGAAGAAGCAGCCCCCAAG
AAAATAAAGGCACACAAAAGAAGTGGAAAGGAAAAACCCAAGACTCTGCAGGAGTTCTTAGAGA
GGATTCACCTTCAGGAATATACCTCAACACTTTTGCTCAATGGTTATGAGAGCCTAGAAGATTT
AAAGGATATAAAAGAGAGTCATCTCATTGAATTAAACATTAAAAACCCCGAAGATAGAATGAGG
TTACTATCAGCTGCTGAAAATCTCCTTGATGAAGAAACTGTTCAAGAGCAAGAAAATGAATCCA
TGCCCCCATCCTTTAGCGCAGACATCTCCTTAAATAAGTCACAGTTAGATGACTGCCCAAGGGA
CTCTGGTTGTTATATCTCATCAGAAAATTCAGATAATGGTAAAGAAGATCTGGAGTCTGAAAAT
CTATCTGACATGGTACAGAAGATTGCTATCACAGAGCCAATCGACTAAACACACTTTCTCAACT
CTATACCTACAGATATGTTCCACTTAAGCTCTTCTTGAACTAAACGATCAAATAGGAGAAGAAA
AGTATTTGTAGATACAAAAAAAGTTTTAAGGGGAATGATTGTACATAAAAGGTCATATCTCTAA
CATTTATAAGTATTATAAATAATATGTATATTTATTACTTTAAAAGCTACGTGTTAATATTTCA
CTTGCCTGTATCAGAAAAAGTATAGTGGGTTTTCTTGTTGTTGTTGTTCTTTTTTTTCTTTTTA
GGGCCACACCCACAGAATATAGAAGTTCCCAGGCTAGGGGCCGAATCAGAGCTACAGCTGCCGG
CCTACGCCATAGCCACAGCAAAACAGGATCTGAGCTGCATCTGTGATCTACACCATGGCTCATG
GCAATGGCAGATCCTTAACCCACTGAGCAAGGCCAGGGATCAAACCTGCATCCTCATGGATCCT
AGTTGGGTTCATTAACCACTGAGCCACAAAGGGAACTTGTATATTTATTATTTTAAATGCTTAT
GTTAATGTTTCACTTGCCTGTAACAGAAAAAGTATAGTGTAAGTGAGATATAATGTGGTATATT
AGATATAAGTTTTATTTGGCTTTATTTTATAAGTACAAAATGATTTTGCCAAAAAACTCTTCTT
TTTATACCTGCTAGTTTTGAATTTGTGTACATTACTGAATGTATAGTAATGGAGCATGTGTCTG
TTTAACCAATTGTCCAAGCAGCATTTTACATTCATTTTTATAATTACTAGGAAAGAATAAGTTA
ATATTGGAGGCATTTTATCCTGATCCATAGTGGACTTTTAGTAACTGGTTTTTGTTGATTTCTT
CACTATTATTCACTATAGATAACAATATGTTGTCAATTCTTATTGAGTAAAACTAATTTTAATA
ACTATACATGTCTTTCATCTTTGTGTAAATATTTTTAATTATGAAATGCTCTAATTTTAATAAT
AAAAAGAACCATGTGCATTTGGTA

hide sequence

RefSeq Acc Id:

XM_021070816 ⟹ XP_020926475

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	179,431,504 - 179,478,960 (-)	NCBI

Sequence:

show sequence

ATCATAAACAGCAAACTGGTGACTGCCTACAGTTGCTTCTGTAACAACAGAAAGTGTACTCACT
CGGAGTAGTCTGAATTCAAAATGCTGAAGAGAAAACCATCCAATGTTTCAGAGAAGGAGAAACA
TCAGAAACCAAAGGTAAATGAAGGGGAACCCACAAATGAAAGTGGAGAACAAAACAAAACTTCA
AATAATGGAGGAGGCTTAGGCAAAAAAATGAGAGCTATTTCCTGGACAATGAAGAAAAAAGCGG
GTAAAAAGTACATCAAAGCCCTTTCTGAGGAAAAGGATGAGGAAGATGGAGAAGATGCCCTCCC
GTATCGGAATAGTGACCCCATGATTGGAAACCATACAGAGAAGGGCTCCCTGAAAGCCAGTGAC
TCCATGGACAGCCTCTACAGTGGGCAGAGCTCATCAAGTGGTATAACAAGCTGTTCAGATGGTA
CAAGTAACCGGGACAGCTTTCGGCTTGATGATGATAGCCCCTACTCAGGACCCTTCTGTGGCCG
TGCCAGAGTACATACGGATTTCACACCAAGTCCCTATGACACTGACTCCCTCAAAATCAAGAAA
GGAGATATCATAGACATTATCTGCAAAACGCCAATGGGGATGTGGACTGGAATGCTGAACAATA
AAGTGGGAAACTTCAAATTTATTTATGTCGATGTCATCTCAGAAGAAGAAGAAGCAGCCCCCAA
GAAAATAAAGGCACACAAAAGAAGTGGAAAGGAAAAACCCAAGACTCTGCAGGAGTTCTTAGAG
AGGATTCACCTTCAGGAATATACCTCAACACTTTTGCTCAATGGTTATGAGAGCCTAGAAGATT
TAAAGGATATAAAAGAGAGTCATCTCATTGAATTAAACATTAAAAACCCCGAAGATAGAATGAG
GTTACTATCAGCTGCTGAAAATCTCCTTGATGAAGAAACTGTTCAAGAGCAAGAAAATGAATCC
ATGCCCCCATCCTTTAGCGCAGACATCTCCTTAAATAAGTCACAGTTAGATGACTGCCCAAGGG
ACTCTGGTTGTTATATCTCATCAGAAAATTCAGATAATGGTAAAGAAGATCTGGAGTCTGAAAA
TCTATCTGACATGGTACAGAAGATTGCTATCACAGAGCCAATCGACTAAACACACTTTCTCAAC
TCTATACCTACAGATATGTTCCACTTAAGCTCTTCTTGAACTAAACGATCAAATAGGAGAAGAA
AAGTATTTGTAGATACAAAAAAAGTTTTAAGGGGAATGATTGTACATAAAAGGTCATATCTCTA
ACATTTATAAGTATTATAAATAATATGTATATTTATTACTTTAAAAGCTACGTGTTAATATTTC
ACTTGCCTGTATCAGAAAAAGTATAGTGGGTTTTCTTGTTGTTGTTGTTCTTTTTTTTCTTTTT
AGGGCCACACCCACAGAATATAGAAGTTCCCAGGCTAGGGGCCGAATCAGAGCTACAGCTGCCG
GCCTACGCCATAGCCACAGCAAAACAGGATCTGAGCTGCATCTGTGATCTACACCATGGCTCAT
GGCAATGGCAGATCCTTAACCCACTGAGCAAGGCCAGGGATCAAACCTGCATCCTCATGGATCC
TAGTTGGGTTCATTAACCACTGAGCCACAAAGGGAACTTGTATATTTATTATTTTAAATGCTTA
TGTTAATGTTTCACTTGCCTGTAACAGAAAAAGTATAGTGTAAGTGAGATATAATGTGGTATAT
TAGATATAAGTTTTATTTGGCTTTATTTTATAAGTACAAAATGATTTTGCCAAAAAACTCTTCT
TTTTATACCTGCTAGTTTTGAATTTGTGTACATTACTGAATGTATAGTAATGGAGCATGTGTCT
GTTTAACCAATTGTCCAAGCAGCATTTTACATTCATTTTTATAATTACTAGGAAAGAATAAGTT
AATATTGGAGGCATTTTATCCTGATCCATAGTGGACTTTTAGTAACTGGTTTTTGTTGATTTCT
TCACTATTATTCACTATAGATAACAATATGTTGTCAATTCTTATTGAGTAAAACTAATTTTAAT
AACTATACATGTCTTTCATCTTTGTGTAAATATTTTTAATTATGAAATGCTCTAATTTTAATAA
TAAAAAGAACCATGT

hide sequence

RefSeq Acc Id:

XM_021070817 ⟹ XP_020926476

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	179,431,494 - 179,509,359 (-)	NCBI

Sequence:

show sequence

AGGAGGAAGGCAGAAATGGAGATTAGATTGGATTCTATCTCTGCAACACTGGTTAGATCCAGTA
CTTCAACTGGATGCAGCTTGGCAGAAATGTTATCCTACAATGAAGGTGAAGTTCAGATGTGGAA
CAGTTGGAAGCCTTTTCCAGAAAACCCACTGTGGACATACGTCGATTTCCAAGCTGACCAGGTT
GGACCTTGGGACAACTGTTTCCACTGCACTCACCACCCACATCTCAGATCTTCTTGTACAGATA
TGGATCTCCCACATTCATGGCGCAGCAGCAGTTTTGGGAATTTTGATCGTTTTCGGAATAATTC
CATATCAAAACCAGATGATTCAACTGGGGTAAATGAAGGGGAACCCACAAATGAAAGTGGAGAA
CAAAACAAAACTTCAAATAATGGAGGAGGCTTAGGCAAAAAAATGAGAGCTATTTCCTGGACAA
TGAAGAAAAAAGCGGGTAAAAAGTACATCAAAGCCCTTTCTGAGGAAAAGGATGAGGAAGATGG
AGAAGATGCCCTCCCGTATCGGAATAGTGACCCCATGATTGGAAACCATACAGAGAAGGGCTCC
CTGAAAGCCAGTGACTCCATGGACAGCCTCTACAGTGGGCAGAGCTCATCAAGTGGTATAACAA
GCTGTTCAGATGGTACAAGTAACCGGGACAGCTTTCGGCTTGATGATGATAGCCCCTACTCAGG
ACCCTTCTGTGGCCGTGCCAGAGTACATACGGATTTCACACCAAGTCCCTATGACACTGACTCC
CTCAAAATCAAGAAAGGAGATATCATAGACATTATCTGCAAAACGCCAATGGGGATGTGGACTG
GAATGCTGAACAATAAAGTGGGAAACTTCAAATTTATTTATGTCGATGTCATCTCAGAAGAAGA
AGAAGCAGCCCCCAAGAAAATAAAGGCACACAAAAGAAGTGGAAAGGAAAAACCCAAGACTCTG
CAGGAGTTCTTAGAGAGGATTCACCTTCAGGAATATACCTCAACACTTTTGCTCAATGGTTATG
AGAGCCTAGAAGATTTAAAGGATATAAAAGAGAGTCATCTCATTGAATTAAACATTAAAAACCC
CGAAGATAGAATGAGGTTACTATCAGCTGCTGAAAATCTCCTTGATGAAGAAACTGTTCAAGAG
CAAGAAAATGAATCCATGCCCCCATCCTTTAGCGCAGACATCTCCTTAAATAAGTCACAGTTAG
ATGACTGCCCAAGGGACTCTGGTTGTTATATCTCATCAGAAAATTCAGATAATGGTAAAGAAGA
TCTGGAGTCTGAAAATCTATCTGACATGGTACAGAAGATTGCTATCACAGAGCCAATCGACTAA
ACACACTTTCTCAACTCTATACCTACAGATATGTTCCACTTAAGCTCTTCTTGAACTAAACGAT
CAAATAGGAGAAGAAAAGTATTTGTAGATACAAAAAAAGTTTTAAGGGGAATGATTGTACATAA
AAGGTCATATCTCTAACATTTATAAGTATTATAAATAATATGTATATTTATTACTTTAAAAGCT
ACGTGTTAATATTTCACTTGCCTGTATCAGAAAAAGTATAGTGGGTTTTCTTGTTGTTGTTGTT
CTTTTTTTTCTTTTTAGGGCCACACCCACAGAATATAGAAGTTCCCAGGCTAGGGGCCGAATCA
GAGCTACAGCTGCCGGCCTACGCCATAGCCACAGCAAAACAGGATCTGAGCTGCATCTGTGATC
TACACCATGGCTCATGGCAATGGCAGATCCTTAACCCACTGAGCAAGGCCAGGGATCAAACCTG
CATCCTCATGGATCCTAGTTGGGTTCATTAACCACTGAGCCACAAAGGGAACTTGTATATTTAT
TATTTTAAATGCTTATGTTAATGTTTCACTTGCCTGTAACAGAAAAAGTATAGTGTAAGTGAGA
TATAATGTGGTATATTAGATATAAGTTTTATTTGGCTTTATTTTATAAGTACAAAATGATTTTG
CCAAAAAACTCTTCTTTTTATACCTGCTAGTTTTGAATTTGTGTACATTACTGAATGTATAGTA
ATGGAGCATGTGTCTGTTTAACCAATTGTCCAAGCAGCATTTTACATTCATTTTTATAATTACT
AGGAAAGAATAAGTTAATATTGGAGGCATTTTATCCTGATCCATAGTGGACTTTTAGTAACTGG
TTTTTGTTGATTTCTTCACTATTATTCACTATAGATAACAATATGTTGTCAATTCTTATTGAGT
AAAACTAATTTTAATAACTATACATGTCTTTCATCTTTGTGTAAATATTTTTAATTATGAAATG
CTCTAATTTTAATAATAAAAAGAACCATGTGCATTTGGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020926474	(Get FASTA)	NCBI Sequence Viewer
	XP_020926475	(Get FASTA)	NCBI Sequence Viewer
	XP_020926476	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000040072.2
	ENSSSCP00000043292
	ENSSSCP00000043292.1
	ENSSSCP00000059651.2
	ENSSSCP00000069786.1
	ENSSSCP00000071368
	ENSSSCP00000071368.1
	ENSSSCP00025003319.1
	ENSSSCP00025003321.1
	ENSSSCP00025003322.1
	ENSSSCP00025003325.1
	ENSSSCP00025003330.1
	ENSSSCP00030018744.1
	ENSSSCP00030018757.1
	ENSSSCP00030018765.1
	ENSSSCP00030018771.1
	ENSSSCP00030018773.1
	ENSSSCP00035003202.1
	ENSSSCP00035003206.1
	ENSSSCP00035003209.1
	ENSSSCP00035003213.1
	ENSSSCP00035003215.1
	ENSSSCP00040035558.1
	ENSSSCP00040035622.1
	ENSSSCP00040035655.1
	ENSSSCP00040035695.1
	ENSSSCP00040035794.1
	ENSSSCP00045028272.1
	ENSSSCP00045028420.1
	ENSSSCP00045028500.1
	ENSSSCP00045028551.1
	ENSSSCP00045028630.1
	ENSSSCP00050029672.1
	ENSSSCP00050029676.1
	ENSSSCP00050029679.1
	ENSSSCP00050029681.1
	ENSSSCP00050029683.1
	ENSSSCP00055016562.1
	ENSSSCP00055016608.1
	ENSSSCP00055016633.1
	ENSSSCP00055016663.1
	ENSSSCP00055016683.1
	ENSSSCP00055016705.1
	ENSSSCP00060038650.1
	ENSSSCP00060038682.1
	ENSSSCP00060038692.1
	ENSSSCP00060038715.1
	ENSSSCP00060038743.1
	ENSSSCP00065028580.1
	ENSSSCP00065028582.1
	ENSSSCP00065028585.1
	ENSSSCP00065028589.1
	ENSSSCP00065028590.1
	ENSSSCP00070028515.1
	ENSSSCP00070028523.1
	ENSSSCP00070028535.1
	ENSSSCP00070028538.1
GenBank Protein	JAG69201	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_020926476 ⟸ XM_021070817

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEIRLDSISATLVRSSTSTGCSLAEMLSYNEGEVQMWNSWKPFPENPLWTYVDFQADQVGPWDN
CFHCTHHPHLRSSCTDMDLPHSWRSSSFGNFDRFRNNSISKPDDSTGVNEGEPTNESGEQNKTS
NNGGGLGKKMRAISWTMKKKAGKKYIKALSEEKDEEDGEDALPYRNSDPMIGNHTEKGSLKASD
SMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKK
GDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLE
RIHLQEYTSTLLLNGYESLEDLKDIKESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQENES
MPPSFSADISLNKSQLDDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITEPID

hide sequence

RefSeq Acc Id:	XP_020926474 ⟸ XM_021070815
- Peptide Label:	isoform X1
- UniProtKB:	A0A287AH35 (UniProtKB/TrEMBL), A0A4X1UET0 (UniProtKB/TrEMBL), A0A0B8RVJ0 (UniProtKB/TrEMBL), A0A5G2QXZ0 (UniProtKB/TrEMBL), A0A8D0UGJ9 (UniProtKB/TrEMBL), A0A8D0YP58 (UniProtKB/TrEMBL), A0A8D1YXW6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLKRKPSNVSEKEKHQKPKRSSSFGNFDRFRNNSISKPDDSTGVNEGEPTNESGEQNKTSNNGG GLGKKMRAISWTMKKKAGKKYIKALSEEKDEEDGEDALPYRNSDPMIGNHTEKGSLKASDSMDS LYSGQSSSSGITSCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDII DIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLERIHL QEYTSTLLLNGYESLEDLKDIKESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQENESMPPS FSADISLNKSQLDDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITEPID hide sequence

RefSeq Acc Id:	XP_020926475 ⟸ XM_021070816
- Peptide Label:	isoform X2
- UniProtKB:	A0A480T6J5 (UniProtKB/TrEMBL), A0A4X1UIW8 (UniProtKB/TrEMBL), A0A8D1Q7T5 (UniProtKB/TrEMBL), A0A8D0QQU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLKRKPSNVSEKEKHQKPKVNEGEPTNESGEQNKTSNNGGGLGKKMRAISWTMKKKAGKKYIKA LSEEKDEEDGEDALPYRNSDPMIGNHTEKGSLKASDSMDSLYSGQSSSSGITSCSDGTSNRDSF RLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKF IYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLERIHLQEYTSTLLLNGYESLEDLKDIKES HLIELNIKNPEDRMRLLSAAENLLDEETVQEQENESMPPSFSADISLNKSQLDDCPRDSGCYIS SENSDNGKEDLESENLSDMVQKIAITEPID hide sequence

Ensembl Acc Id:

ENSSSCP00000059651 ⟸ ENSSSCT00000070236

Ensembl Acc Id:

ENSSSCP00000040072 ⟸ ENSSSCT00000061724

Ensembl Acc Id:

ENSSSCP00000043292 ⟸ ENSSSCT00000043622

Ensembl Acc Id:

ENSSSCP00000071368 ⟸ ENSSSCT00000067892

Ensembl Acc Id:

ENSSSCP00000069786 ⟸ ENSSSCT00000086955

Protein Domains

SAM SH3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000038062	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025006287	UniProtKB/TrEMBL
	ENSSSCG00030029522	UniProtKB/TrEMBL
	ENSSSCG00035007590	UniProtKB/TrEMBL
	ENSSSCG00040059875	UniProtKB/TrEMBL
	ENSSSCG00045023573	UniProtKB/TrEMBL
	ENSSSCG00050050712	UniProtKB/TrEMBL
	ENSSSCG00055010573	UniProtKB/TrEMBL
	ENSSSCG00060065152	UniProtKB/TrEMBL
	ENSSSCG00065048204	UniProtKB/TrEMBL
	ENSSSCG00070017301	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000043622	ENTREZGENE
	ENSSSCT00000043622.3	UniProtKB/TrEMBL
	ENSSSCT00000061724.3	UniProtKB/TrEMBL
	ENSSSCT00000067892	ENTREZGENE
	ENSSSCT00000067892.1	UniProtKB/TrEMBL
	ENSSSCT00000070236.2	UniProtKB/TrEMBL
	ENSSSCT00000086955.1	UniProtKB/TrEMBL
	ENSSSCT00025008375.1	UniProtKB/TrEMBL
	ENSSSCT00025008384.1	UniProtKB/TrEMBL
	ENSSSCT00025008391.1	UniProtKB/TrEMBL
	ENSSSCT00025008401.1	UniProtKB/TrEMBL
	ENSSSCT00025008412.1	UniProtKB/TrEMBL
	ENSSSCT00030041193.1	UniProtKB/TrEMBL
	ENSSSCT00030041226.1	UniProtKB/TrEMBL
	ENSSSCT00030041242.1	UniProtKB/TrEMBL
	ENSSSCT00030041251.1	UniProtKB/TrEMBL
	ENSSSCT00030041257.1	UniProtKB/TrEMBL
	ENSSSCT00035009509.1	UniProtKB/TrEMBL
	ENSSSCT00035009530.1	UniProtKB/TrEMBL
	ENSSSCT00035009537.1	UniProtKB/TrEMBL
	ENSSSCT00035009542.1	UniProtKB/TrEMBL
	ENSSSCT00035009544.1	UniProtKB/TrEMBL
	ENSSSCT00040081763.1	UniProtKB/TrEMBL
	ENSSSCT00040081876.1	UniProtKB/TrEMBL
	ENSSSCT00040081960.1	UniProtKB/TrEMBL
	ENSSSCT00040082058.1	UniProtKB/TrEMBL
	ENSSSCT00040082228.1	UniProtKB/TrEMBL
	ENSSSCT00045040637.1	UniProtKB/TrEMBL
	ENSSSCT00045040908.1	UniProtKB/TrEMBL
	ENSSSCT00045041043.1	UniProtKB/TrEMBL
	ENSSSCT00045041124.1	UniProtKB/TrEMBL
	ENSSSCT00045041248.1	UniProtKB/TrEMBL
	ENSSSCT00050069070.1	UniProtKB/TrEMBL
	ENSSSCT00050069078.1	UniProtKB/TrEMBL
	ENSSSCT00050069082.1	UniProtKB/TrEMBL
	ENSSSCT00050069084.1	UniProtKB/TrEMBL
	ENSSSCT00050069086.1	UniProtKB/TrEMBL
	ENSSSCT00055020935.1	UniProtKB/TrEMBL
	ENSSSCT00055021003.1	UniProtKB/TrEMBL
	ENSSSCT00055021032.1	UniProtKB/TrEMBL
	ENSSSCT00055021067.1	UniProtKB/TrEMBL
	ENSSSCT00055021091.1	UniProtKB/TrEMBL
	ENSSSCT00055021117.1	UniProtKB/TrEMBL
	ENSSSCT00060089266.1	UniProtKB/TrEMBL
	ENSSSCT00060089322.1	UniProtKB/TrEMBL
	ENSSSCT00060089341.1	UniProtKB/TrEMBL
	ENSSSCT00060089398.1	UniProtKB/TrEMBL
	ENSSSCT00060089455.1	UniProtKB/TrEMBL
	ENSSSCT00065065964.1	UniProtKB/TrEMBL
	ENSSSCT00065065974.1	UniProtKB/TrEMBL
	ENSSSCT00065065978.1	UniProtKB/TrEMBL
	ENSSSCT00065065987.1	UniProtKB/TrEMBL
	ENSSSCT00065065990.1	UniProtKB/TrEMBL
	ENSSSCT00070034143.1	UniProtKB/TrEMBL
	ENSSSCT00070034152.1	UniProtKB/TrEMBL
	ENSSSCT00070034164.1	UniProtKB/TrEMBL
	ENSSSCT00070034168.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	rSAM/SH3_domain-containing	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
	SAM-SH3_domain_protein	UniProtKB/TrEMBL
	SAM/pointed_sf	UniProtKB/TrEMBL
	SAMSN1_SAM	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
NCBI Gene	SAMSN1	ENTREZGENE
PANTHER	SAM DOMAIN-CONTAINING PROTEIN SAMSN-1	UniProtKB/TrEMBL
	SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED	UniProtKB/TrEMBL
Pfam	SAM_1	UniProtKB/TrEMBL
	SH3_2	UniProtKB/TrEMBL
	SLY	UniProtKB/TrEMBL
PROSITE	SAM_DOMAIN	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
SMART	SAM	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47769	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
UniProt	A0A0B8RVJ0	ENTREZGENE
	A0A287AH35	ENTREZGENE, UniProtKB/TrEMBL
	A0A480T6J5	ENTREZGENE
	A0A4X1UET0	ENTREZGENE
	A0A4X1UIW8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UJM4_PIG	UniProtKB/TrEMBL
	A0A5G2QMW1_PIG	UniProtKB/TrEMBL
	A0A5G2QXZ0	ENTREZGENE
	A0A8D0QL56_PIG	UniProtKB/TrEMBL
	A0A8D0QQU2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UGJ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0WDX4_PIG	UniProtKB/TrEMBL
	A0A8D0WDY5_PIG	UniProtKB/TrEMBL
	A0A8D0YP58	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FJN9_PIG	UniProtKB/TrEMBL
	A0A8D1Q7T5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1WEL9_PIG	UniProtKB/TrEMBL
	A0A8D1YXW6	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A287A8D3	UniProtKB/TrEMBL
	A0A480T6J5	UniProtKB/TrEMBL
	A0A4X1UET0	UniProtKB/TrEMBL
	A0A5G2QXZ0	UniProtKB/TrEMBL
VGNC ID	VGNC:92573	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar