SERHL2 (serine hydrolase like 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SERHL2 (serine hydrolase like 2) Sus scrofa
Analyze
Symbol: SERHL2
Name: serine hydrolase like 2
RGD ID: 13869423
Description: ENCODES a protein that exhibits hydrolase activity (inferred); ASSOCIATED WITH common variable immunodeficiency 4 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); intellectual disability (ortholog); FOUND IN cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine hydrolase-like protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,216,326 - 6,230,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.156,216,323 - 6,239,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SERHL2Pigcommon variable immunodeficiency 4  ISOSERHL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency more ...ClinVarPMID:28492532
SERHL2PigDevelopmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities  ISOSERHL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental delay with variable intellectual impairment and behavioral abnormalitiesClinVarPMID:30819258 and PMID:31690835
SERHL2Pigintellectual disability  ISOSERHL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SERHL2Pigcytoplasmic vesicle located_inISOSerhl (Mus musculus)9068941 PMID:11352564MGIPMID:11352564

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SERHL2Pighydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
SERHL2Pighydrolase activity enablesIBAMGI:99500 more ...150520179 GO_CentralGO_REF:0000033



SERHL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,216,326 - 6,230,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.156,216,323 - 6,239,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SERHL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382242,553,956 - 42,574,382 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2242,553,617 - 42,574,382 (+)EnsemblGRCh38hg38GRCh38
GRCh372242,949,962 - 42,970,388 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,279,869 - 41,300,332 (+)NCBINCBI36Build 36hg18NCBI36
Celera2226,860,413 - 26,880,873 (+)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,910,619 - 25,931,056 (+)NCBIHuRef
CHM1_12242,909,057 - 42,929,534 (+)NCBICHM1_1
T2T-CHM13v2.02243,034,822 - 43,055,247 (+)NCBIT2T-CHM13v2.0
Serhl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,984,394 - 83,000,876 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,973,707 - 83,000,875 (+)EnsemblGRCm39 Ensembl
GRCm381583,100,192 - 83,116,676 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1583,089,506 - 83,116,674 (+)EnsemblGRCm38mm10GRCm38
MGSCv371582,930,635 - 82,947,101 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361582,927,981 - 82,950,511 (+)NCBIMGSCv36mm8
Celera1585,232,976 - 85,250,013 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1539.32NCBI
Serhl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87116,126,085 - 116,146,345 (+)NCBIGRCr8
mRatBN7.27114,246,035 - 114,266,298 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7114,246,056 - 114,272,781 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7116,001,164 - 116,021,447 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07118,225,274 - 118,245,525 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07118,194,720 - 118,214,972 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,963,381 - 123,990,103 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,963,381 - 123,990,103 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,946,390 - 123,972,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47121,126,466 - 121,153,421 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7110,560,255 - 110,586,960 (+)NCBICelera
Cytogenetic Map7q34NCBI
SERHL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22352,353,671 - 52,409,462 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12255,045,926 - 55,101,936 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02223,413,724 - 23,469,689 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12241,602,540 - 41,622,944 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2241,602,540 - 41,622,944 (+)Ensemblpanpan1.1panPan2
SERHL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11022,891,092 - 22,928,524 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1022,891,095 - 22,928,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1022,826,394 - 22,863,487 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01023,635,950 - 23,673,048 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1023,635,955 - 23,673,084 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,353,511 - 23,390,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01023,672,980 - 23,710,070 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01023,848,611 - 23,885,706 (-)NCBIUU_Cfam_GSD_1.0
Serhl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049456,480,310 - 6,498,093 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936718482,102 - 499,855 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103223420
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11925,028,646 - 25,132,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366617487,839 - 149,351 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

.
Variants in SERHL2
632 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000054708   ⟹   ENSSSCP00000043915
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl56,216,326 - 6,230,367 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000055686   ⟹   ENSSSCP00000036510
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl56,216,326 - 6,230,367 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000069277   ⟹   ENSSSCP00000067161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl56,216,506 - 6,230,367 (-)Ensembl
RefSeq Acc Id: XM_021091433   ⟹   XP_020947092
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.156,216,323 - 6,230,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091434   ⟹   XP_020947093
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.156,216,326 - 6,239,811 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020947092   ⟸   XM_021091433
- Peptide Label: isoform X1
- UniProtKB: A0A480T5F3 (UniProtKB/TrEMBL),   A0A8D0MRX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947093   ⟸   XM_021091434
- Peptide Label: isoform X2
- UniProtKB: A0A287AJ52 (UniProtKB/TrEMBL),   A0A4X1W557 (UniProtKB/TrEMBL),   A0A8D0MRX3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000043915   ⟸   ENSSSCT00000054708
Ensembl Acc Id: ENSSSCP00000036510   ⟸   ENSSSCT00000055686
Ensembl Acc Id: ENSSSCP00000067161   ⟸   ENSSSCT00000069277
AB hydrolase-1



1 to 40 of 62 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000034350 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015015137 UniProtKB/TrEMBL
  ENSSSCG00025008953 UniProtKB/TrEMBL
  ENSSSCG00030008344 UniProtKB/TrEMBL
  ENSSSCG00035032047 UniProtKB/TrEMBL
  ENSSSCG00040014732 UniProtKB/TrEMBL
  ENSSSCG00045010378 UniProtKB/TrEMBL
  ENSSSCG00050024010 UniProtKB/TrEMBL
  ENSSSCG00055024135 UniProtKB/TrEMBL
  ENSSSCG00060060947 UniProtKB/TrEMBL
  ENSSSCG00065054766 UniProtKB/TrEMBL
  ENSSSCG00070028539 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000054708 ENTREZGENE
  ENSSSCT00000054708.3 UniProtKB/TrEMBL
  ENSSSCT00000055686.3 UniProtKB/TrEMBL
  ENSSSCT00000069277.2 UniProtKB/TrEMBL
  ENSSSCT00015020236.1 UniProtKB/TrEMBL
  ENSSSCT00025011992.1 UniProtKB/TrEMBL
  ENSSSCT00025012019.1 UniProtKB/TrEMBL
  ENSSSCT00025012045.1 UniProtKB/TrEMBL
  ENSSSCT00025012054.1 UniProtKB/TrEMBL
  ENSSSCT00030011439.1 UniProtKB/TrEMBL
  ENSSSCT00035042466.1 UniProtKB/TrEMBL
  ENSSSCT00035042470.1 UniProtKB/TrEMBL
  ENSSSCT00040019852.1 UniProtKB/TrEMBL
  ENSSSCT00045017777.1 UniProtKB/TrEMBL
  ENSSSCT00050032415.1 UniProtKB/TrEMBL
  ENSSSCT00050032418.1 UniProtKB/TrEMBL
  ENSSSCT00055048326.1 UniProtKB/TrEMBL
  ENSSSCT00055048445.1 UniProtKB/TrEMBL
  ENSSSCT00055048647.1 UniProtKB/TrEMBL
  ENSSSCT00055048745.1 UniProtKB/TrEMBL
  ENSSSCT00060083466.1 UniProtKB/TrEMBL
  ENSSSCT00065075047.1 UniProtKB/TrEMBL
  ENSSSCT00065075060.1 UniProtKB/TrEMBL
  ENSSSCT00065075067.1 UniProtKB/TrEMBL
  ENSSSCT00065075071.1 UniProtKB/TrEMBL
  ENSSSCT00070057259.1 UniProtKB/TrEMBL
  ENSSSCT00070057260.1 UniProtKB/TrEMBL
  ENSSSCT00070057262.1 UniProtKB/TrEMBL
1 to 40 of 62 rows