SLC5A10 (solute carrier family 5 member 10) - Rat Genome Database

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Gene: SLC5A10 (solute carrier family 5 member 10) Sus scrofa
Analyze
Symbol: SLC5A10
Name: solute carrier family 5 member 10
RGD ID: 13853112
Description: ENCODES a protein that exhibits fructose:sodium symporter activity (ortholog); mannose:sodium symporter activity (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (inferred); fructose transmembrane transport (inferred); glucose transmembrane transport (inferred); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (inferred); cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Na(+)/glucose cotransporter 5; SGLT1; SGLT5; SLC5A1; sodium/glucose cotransporter 5; sodium/mannose cotransporter SLC5A10; solute carrier family 5 (sodium/glucose cotransporter), member 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,281,885 - 60,332,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,281,883 - 60,332,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,935,020 - 62,950,211 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15777622   PMID:16259605   PMID:21030609   PMID:21454867   PMID:22301074   PMID:22683689   PMID:27264891   PMID:27851758   PMID:30032202   PMID:32070687  


Genomics

Comparative Map Data
SLC5A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,281,885 - 60,332,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,281,883 - 60,332,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,935,020 - 62,950,211 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC5A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,950,676 - 19,022,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,950,345 - 19,022,595 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,853,989 - 18,925,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,796,203 - 18,864,728 (+)NCBINCBI36Build 36hg18NCBI36
Build 341718,794,713 - 18,864,722NCBI
Celera1720,769,838 - 20,834,185 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1718,419,873 - 18,491,306 (+)NCBIHuRef
CHM1_11718,862,768 - 18,932,795 (+)NCBICHM1_1
T2T-CHM13v2.01718,897,202 - 18,970,458 (+)NCBIT2T-CHM13v2.0
Slc5a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,563,608 - 61,611,641 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,563,607 - 61,611,652 (-)EnsemblGRCm39 Ensembl
GRCm381161,672,782 - 61,720,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,672,781 - 61,720,826 (-)EnsemblGRCm38mm10GRCm38
MGSCv371161,486,284 - 61,534,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,488,977 - 61,536,994 (-)NCBIMGSCv36mm8
MGSCv361162,101,847 - 62,149,864 (-)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Slc5a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,851,527 - 46,898,460 (-)NCBIGRCr8
mRatBN7.21046,352,060 - 46,400,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,352,061 - 46,399,811 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,055,785 - 51,102,222 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,546,320 - 50,592,757 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,049,731 - 46,096,169 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,949,775 - 47,997,802 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,949,665 - 47,997,796 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,742,919 - 47,789,930 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,831,700 - 47,878,552 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,845,143 - 47,900,313 (-)NCBI
Celera1045,600,367 - 45,646,479 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc5a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467581,129 - 654,639 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955467581,120 - 654,441 (-)NCBIChiLan1.0ChiLan1.0
SLC5A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21954,023,293 - 54,094,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11758,645,521 - 58,717,194 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,219,877 - 32,289,598 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11737,152,047 - 37,221,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1737,152,047 - 37,221,554 (-)Ensemblpanpan1.1panPan2
SLC5A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,038,968 - 41,095,463 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,039,015 - 41,167,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,180,269 - 41,236,575 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,146,582 - 41,203,038 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,146,629 - 41,203,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,114,543 - 41,170,824 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,061,603 - 41,117,896 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,253,746 - 41,310,052 (-)NCBIUU_Cfam_GSD_1.0
Slc5a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,925,690 - 59,979,680 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936881607,818 - 661,615 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936881607,818 - 661,573 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103242501
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,651,157 - 17,721,260 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,652,357 - 17,721,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,213,903 - 3,224,034 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc5a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248495,368,343 - 5,441,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248495,364,527 - 5,441,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC5A10
2178 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 5 1 2 3
Low 10 2 3 2 23 1 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000019643   ⟹   ENSSSCP00000019123
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,281,885 - 60,332,141 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000019644   ⟹   ENSSSCP00000019124
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,343,309 - 60,376,568 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053536   ⟹   ENSSSCP00000041082
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,340,883 - 60,376,537 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060063   ⟹   ENSSSCP00000043833
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,343,501 - 60,376,568 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061151   ⟹   ENSSSCP00000032146
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,343,513 - 60,370,222 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064503   ⟹   ENSSSCP00000055415
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,343,501 - 60,376,568 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067980   ⟹   ENSSSCP00000068797
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,281,885 - 60,332,141 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068171   ⟹   ENSSSCP00000068137
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,281,885 - 60,332,141 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068252   ⟹   ENSSSCP00000074260
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1260,281,885 - 60,332,141 (-)Ensembl
RefSeq Acc Id: NM_001012297   ⟹   NP_001012297
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11260,281,883 - 60,332,141 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001012297   ⟸   NM_001012297
- UniProtKB: Q5FY69 (UniProtKB/Swiss-Prot),   A0A4X1SXM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000055415   ⟸   ENSSSCT00000064503
RefSeq Acc Id: ENSSSCP00000043833   ⟸   ENSSSCT00000060063
RefSeq Acc Id: ENSSSCP00000068137   ⟸   ENSSSCT00000068171
RefSeq Acc Id: ENSSSCP00000074260   ⟸   ENSSSCT00000068252
RefSeq Acc Id: ENSSSCP00000019123   ⟸   ENSSSCT00000019643
RefSeq Acc Id: ENSSSCP00000019124   ⟸   ENSSSCT00000019644
RefSeq Acc Id: ENSSSCP00000032146   ⟸   ENSSSCT00000061151
RefSeq Acc Id: ENSSSCP00000068797   ⟸   ENSSSCT00000067980
RefSeq Acc Id: ENSSSCP00000041082   ⟸   ENSSSCT00000053536

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018049 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000053434 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015076753 UniProtKB/TrEMBL
  ENSSSCG00025028910 UniProtKB/TrEMBL
  ENSSSCG00030025236 UniProtKB/TrEMBL
  ENSSSCG00035072171 UniProtKB/TrEMBL
  ENSSSCG00040040148 UniProtKB/TrEMBL
  ENSSSCG00045000322 UniProtKB/TrEMBL
  ENSSSCG00050057659 UniProtKB/TrEMBL
  ENSSSCG00060077182 UniProtKB/TrEMBL
  ENSSSCG00070005020 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019643.4 UniProtKB/TrEMBL
  ENSSSCT00000064503.3 UniProtKB/TrEMBL
  ENSSSCT00000068171 ENTREZGENE
  ENSSSCT00000068171.2 UniProtKB/TrEMBL
  ENSSSCT00000068252.2 UniProtKB/TrEMBL
  ENSSSCT00015103995.1 UniProtKB/TrEMBL
  ENSSSCT00015104419.1 UniProtKB/TrEMBL
  ENSSSCT00025039544.1 UniProtKB/TrEMBL
  ENSSSCT00025039714.1 UniProtKB/TrEMBL
  ENSSSCT00025039983.1 UniProtKB/TrEMBL
  ENSSSCT00025040625.1 UniProtKB/TrEMBL
  ENSSSCT00030035253.1 UniProtKB/TrEMBL
  ENSSSCT00030035270.1 UniProtKB/TrEMBL
  ENSSSCT00030035292.1 UniProtKB/TrEMBL
  ENSSSCT00030035337.1 UniProtKB/TrEMBL
  ENSSSCT00035097699.1 UniProtKB/TrEMBL
  ENSSSCT00035097740.1 UniProtKB/TrEMBL
  ENSSSCT00035097796.1 UniProtKB/TrEMBL
  ENSSSCT00035097886.1 UniProtKB/TrEMBL
  ENSSSCT00040053995.1 UniProtKB/TrEMBL
  ENSSSCT00040054267.1 UniProtKB/TrEMBL
  ENSSSCT00040054642.1 UniProtKB/TrEMBL
  ENSSSCT00040055404.1 UniProtKB/TrEMBL
  ENSSSCT00045000496.1 UniProtKB/TrEMBL
  ENSSSCT00045000520.1 UniProtKB/TrEMBL
  ENSSSCT00045000550.1 UniProtKB/TrEMBL
  ENSSSCT00045000601.1 UniProtKB/TrEMBL
  ENSSSCT00045000648.1 UniProtKB/TrEMBL
  ENSSSCT00045000687.1 UniProtKB/TrEMBL
  ENSSSCT00050078673.1 UniProtKB/TrEMBL
  ENSSSCT00050078704.1 UniProtKB/TrEMBL
  ENSSSCT00060106383.1 UniProtKB/TrEMBL
  ENSSSCT00060106426.1 UniProtKB/TrEMBL
  ENSSSCT00060106514.1 UniProtKB/TrEMBL
  ENSSSCT00070009702.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1730.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.2020 UniProtKB/TrEMBL
InterPro Na/Glc_symporter_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/solute_symporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/solute_symporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pribosyltran_N UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
  Rib-P_diPkinase UniProtKB/TrEMBL
KEGG Report ssc:497235 UniProtKB/Swiss-Prot
NCBI Gene SLC5A10 ENTREZGENE
PANTHER PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE-ASSOCIATED PROTEIN 2 UniProtKB/TrEMBL
  PTHR10210 UniProtKB/TrEMBL
  SODIUM/GLUCOSE COTRANSPORTER 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pribosyl_synth UniProtKB/TrEMBL
  Pribosyltran_N UniProtKB/TrEMBL
  SSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NA_SOLUT_SYMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_SOLUT_SYMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Pribosyltran_N UniProtKB/TrEMBL
Superfamily-SCOP SSF53271 UniProtKB/TrEMBL
UniProt A0A287BFW1_PIG UniProtKB/TrEMBL
  A0A4X1SXM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R1R9_PIG UniProtKB/TrEMBL
  A0A5G2RN94_PIG UniProtKB/TrEMBL
  A0A8D0RIN7_PIG UniProtKB/TrEMBL
  A0A8D0UMY0_PIG UniProtKB/TrEMBL
  A0A8D1AYH3_PIG UniProtKB/TrEMBL
  A0A8D1EHX7_PIG UniProtKB/TrEMBL
  A0A8D1G6V8_PIG UniProtKB/TrEMBL
  A0A8D1GAJ2_PIG UniProtKB/TrEMBL
  A0A8D1GC61_PIG UniProtKB/TrEMBL
  A0A8D1KN29_PIG UniProtKB/TrEMBL
  A0A8D1KN43_PIG UniProtKB/TrEMBL
  B6EBT6_PIG UniProtKB/TrEMBL
  F1SB19_PIG UniProtKB/TrEMBL
  Q5FY69 ENTREZGENE, UniProtKB/Swiss-Prot