SLC5A10 (solute carrier family 5 member 10) - Rat Genome Database

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Gene: SLC5A10 (solute carrier family 5 member 10) Canis lupus familiaris
Analyze
Symbol: SLC5A10
Name: solute carrier family 5 member 10
RGD ID: 12418745
Description: ENCODES a protein that exhibits magnesium ion binding (inferred); ribose phosphate diphosphokinase activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN glucose transmembrane transport (inferred); nucleoside metabolic process (inferred); nucleotide biosynthetic process (inferred); ASSOCIATED WITH autistic disorder (ortholog); Common Variable Immunodeficiency 2 (ortholog); Joubert syndrome (ortholog); FOUND IN integral component of membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium/glucose cotransporter 5; solute carrier family 5 (sodium/glucose cotransporter), member 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,038,968 - 41,095,463 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,039,015 - 41,167,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,180,269 - 41,236,575 (-)NCBI
ROS_Cfam_1.0541,146,582 - 41,203,038 (-)NCBI
ROS_Cfam_1.0 Ensembl541,146,629 - 41,203,139 (-)Ensembl
UMICH_Zoey_3.1541,114,543 - 41,170,824 (-)NCBI
UNSW_CanFamBas_1.0541,061,603 - 41,117,896 (-)NCBI
UU_Cfam_GSD_1.0541,253,746 - 41,310,052 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SLC5A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,038,968 - 41,095,463 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,039,015 - 41,167,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,180,269 - 41,236,575 (-)NCBI
ROS_Cfam_1.0541,146,582 - 41,203,038 (-)NCBI
ROS_Cfam_1.0 Ensembl541,146,629 - 41,203,139 (-)Ensembl
UMICH_Zoey_3.1541,114,543 - 41,170,824 (-)NCBI
UNSW_CanFamBas_1.0541,061,603 - 41,117,896 (-)NCBI
UU_Cfam_GSD_1.0541,253,746 - 41,310,052 (-)NCBI
SLC5A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,950,676 - 19,022,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1718,950,345 - 19,022,595 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,853,989 - 18,925,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,796,203 - 18,864,728 (+)NCBINCBI36hg18NCBI36
Build 341718,794,713 - 18,864,722NCBI
Celera1720,769,838 - 20,834,185 (+)NCBI
Cytogenetic Map17p11.2NCBI
HuRef1718,419,873 - 18,491,306 (+)NCBIHuRef
CHM1_11718,862,768 - 18,932,795 (+)NCBICHM1_1
Slc5a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,563,608 - 61,611,641 (-)NCBIGRCm39mm39
GRCm39 Ensembl1161,563,607 - 61,611,652 (-)Ensembl
GRCm381161,672,782 - 61,720,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,672,781 - 61,720,826 (-)EnsemblGRCm38mm10GRCm38
MGSCv371161,486,284 - 61,534,301 (-)NCBIGRCm37mm9NCBIm37
MGSCv361161,488,977 - 61,536,994 (-)NCBImm8
MGSCv361162,101,847 - 62,149,864 (-)NCBImm8
Cytogenetic Map11B2NCBI
Slc5a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21046,352,064 - 46,400,795 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1046,352,061 - 46,399,811 (-)Ensembl
Rnor_6.01047,949,775 - 47,997,802 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,949,665 - 47,997,796 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,742,919 - 47,789,930 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,831,700 - 47,878,552 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11047,845,143 - 47,900,313 (-)NCBI
Celera1045,600,367 - 45,646,479 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc5a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467581,129 - 654,639 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955467581,120 - 654,441 (-)NCBIChiLan1.0ChiLan1.0
SLC5A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11737,152,047 - 37,221,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1737,152,047 - 37,221,554 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01732,219,877 - 32,289,598 (-)NCBIMhudiblu_PPA_v0panPan3
Slc5a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,925,690 - 59,979,680 (+)NCBI
SpeTri2.0NW_004936881607,818 - 661,573 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC5A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,281,878 - 60,396,630 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,281,883 - 60,332,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,935,020 - 62,950,211 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242501
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,651,157 - 17,721,260 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,652,357 - 17,721,048 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660593,213,903 - 3,224,034 (-)NCBIVero_WHO_p1.0
Slc5a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248495,364,527 - 5,441,805 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 15 5 5 12 10 2
Low 5 5 7 6 1 6 1 6 8 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000028971   ⟹   ENSCAFP00000026942
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl541,039,015 - 41,095,411 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000028988   ⟹   ENSCAFP00000026958
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl541,118,229 - 41,167,568 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000059989   ⟹   ENSCAFP00000060390
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl541,039,015 - 41,095,411 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000070300   ⟹   ENSCAFP00000048303
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl541,118,941 - 41,167,568 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000071883   ⟹   ENSCAFP00000050431
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl541,118,941 - 41,167,568 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000074866   ⟹   ENSCAFP00000058808
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl541,118,941 - 41,162,061 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000084645   ⟹   ENSCAFP00000050005
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl541,089,915 - 41,167,568 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845034283   ⟹   ENSCAFP00845026834
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl541,146,629 - 41,203,139 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845034436   ⟹   ENSCAFP00845026971
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl541,146,629 - 41,203,139 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845034524   ⟹   ENSCAFP00845027043
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl541,146,629 - 41,203,139 (-)Ensembl
RefSeq Acc Id: XM_005620138   ⟹   XP_005620195
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1541,038,968 - 41,095,463 (-)NCBI
Dog10K_Boxer_Tasha541,180,269 - 41,236,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038475882   ⟹   XP_038331810
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1541,114,543 - 41,170,824 (-)NCBI
RefSeq Acc Id: XM_038475883   ⟹   XP_038331811
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1541,114,543 - 41,170,824 (-)NCBI
RefSeq Acc Id: XM_038518028   ⟹   XP_038373956
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha541,180,269 - 41,236,574 (-)NCBI
RefSeq Acc Id: XM_038537072   ⟹   XP_038393000
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0541,253,746 - 41,310,051 (-)NCBI
RefSeq Acc Id: XM_038537073   ⟹   XP_038393001
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0541,253,746 - 41,310,052 (-)NCBI
RefSeq Acc Id: XM_038601204   ⟹   XP_038457132
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0541,061,603 - 41,117,896 (-)NCBI
RefSeq Acc Id: XM_038601205   ⟹   XP_038457133
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0541,061,603 - 41,117,896 (-)NCBI
RefSeq Acc Id: XM_038665773   ⟹   XP_038521701
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0541,146,582 - 41,203,037 (-)NCBI
RefSeq Acc Id: XM_038665774   ⟹   XP_038521702
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0541,146,582 - 41,203,038 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005620195   ⟸   XM_005620138
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000058808   ⟸   ENSCAFT00000074866
RefSeq Acc Id: ENSCAFP00000050005   ⟸   ENSCAFT00000084645
RefSeq Acc Id: ENSCAFP00000060390   ⟸   ENSCAFT00000059989
RefSeq Acc Id: ENSCAFP00000048303   ⟸   ENSCAFT00000070300
RefSeq Acc Id: ENSCAFP00000026942   ⟸   ENSCAFT00000028971
RefSeq Acc Id: ENSCAFP00000026958   ⟸   ENSCAFT00000028988
RefSeq Acc Id: ENSCAFP00000050431   ⟸   ENSCAFT00000071883
RefSeq Acc Id: XP_038331811   ⟸   XM_038475883
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038331810   ⟸   XM_038475882
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038457133   ⟸   XM_038601205
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038457132   ⟸   XM_038601204
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038521702   ⟸   XM_038665774
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038521701   ⟸   XM_038665773
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038373956   ⟸   XM_038518028
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038393001   ⟸   XM_038537073
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038393000   ⟸   XM_038537072
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCAFP00845027043   ⟸   ENSCAFT00845034524
RefSeq Acc Id: ENSCAFP00845026834   ⟸   ENSCAFT00845034283
RefSeq Acc Id: ENSCAFP00845026971   ⟸   ENSCAFT00845034436
Protein Domains
Pribosyltran_N

Promoters
RGD ID:13683276
Promoter ID:EPDNEW_C1344
Type:multiple initiation site
Name:SLC5A10_1
Description:solute carrier family 5 member 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1541,095,445 - 41,095,505EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018248 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000210 UniProtKB/TrEMBL
  ENSCAFG00040002308 UniProtKB/TrEMBL
  ENSCAFG00845019395 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000026942 UniProtKB/TrEMBL
  ENSCAFP00000026958 UniProtKB/TrEMBL
  ENSCAFP00000048303 UniProtKB/TrEMBL
  ENSCAFP00000050005 UniProtKB/TrEMBL
  ENSCAFP00000050431 UniProtKB/TrEMBL
  ENSCAFP00000058808 UniProtKB/TrEMBL
  ENSCAFP00000060390 UniProtKB/TrEMBL
  ENSCAFP00030000379 UniProtKB/TrEMBL
  ENSCAFP00030000413 UniProtKB/TrEMBL
  ENSCAFP00030000434 UniProtKB/TrEMBL
  ENSCAFP00040003778 UniProtKB/TrEMBL
  ENSCAFP00040003796 UniProtKB/TrEMBL
  ENSCAFP00040003802 UniProtKB/TrEMBL
  ENSCAFP00845026834 ENTREZGENE
  ENSCAFP00845027043 ENTREZGENE
Ensembl Transcript ENSCAFT00000028971 UniProtKB/TrEMBL
  ENSCAFT00000028988 UniProtKB/TrEMBL
  ENSCAFT00000059989 UniProtKB/TrEMBL
  ENSCAFT00000070300 UniProtKB/TrEMBL
  ENSCAFT00000071883 UniProtKB/TrEMBL
  ENSCAFT00000074866 UniProtKB/TrEMBL
  ENSCAFT00000084645 UniProtKB/TrEMBL
  ENSCAFT00030000432 UniProtKB/TrEMBL
  ENSCAFT00030000473 UniProtKB/TrEMBL
  ENSCAFT00030000494 UniProtKB/TrEMBL
  ENSCAFT00040004399 UniProtKB/TrEMBL
  ENSCAFT00040004423 UniProtKB/TrEMBL
  ENSCAFT00040004429 UniProtKB/TrEMBL
  ENSCAFT00845034283 ENTREZGENE
  ENSCAFT00845034524 ENTREZGENE
Gene3D-CATH 1.20.1730.10 UniProtKB/TrEMBL
  3.40.50.2020 UniProtKB/TrEMBL
InterPro Na/Glc_symporter_sf UniProtKB/TrEMBL
  Na/solute_symporter UniProtKB/TrEMBL
  Na/solute_symporter_CS UniProtKB/TrEMBL
  Pribosyltran_N UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
  Rib-P_diPkinase UniProtKB/TrEMBL
KEGG Report cfa:102156040 UniProtKB/TrEMBL
NCBI Gene SLC5A10 ENTREZGENE
PANTHER PTHR10210 UniProtKB/TrEMBL
Pfam Pribosyl_synth UniProtKB/TrEMBL
  Pribosyltran_N UniProtKB/TrEMBL
  SSF UniProtKB/TrEMBL
PROSITE NA_SOLUT_SYMP_2 UniProtKB/TrEMBL
  NA_SOLUT_SYMP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53271 UniProtKB/TrEMBL
TIGRFAMs ribP_PPkin UniProtKB/TrEMBL
  sss UniProtKB/TrEMBL
UniProt A0A5F4C2B5_CANLF UniProtKB/TrEMBL
  A0A5F4C817_CANLF UniProtKB/TrEMBL
  A0A5F4C985_CANLF UniProtKB/TrEMBL
  A0A5F4D1R3_CANLF UniProtKB/TrEMBL
  A0A5F4D6F7_CANLF UniProtKB/TrEMBL
  A0A8C0PU71_CANLF UniProtKB/TrEMBL
  A0A8C0R9B8_CANLF UniProtKB/TrEMBL
  A0A8C0R9C9_CANLF UniProtKB/TrEMBL
  E2RIW6_CANLF UniProtKB/TrEMBL
  F1P9E3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46443 ENTREZGENE