Slc5a10 (solute carrier family 5 member 10) - Rat Genome Database

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Gene: Slc5a10 (solute carrier family 5 member 10) Ictidomys tridecemlineatus
Analyze
Symbol: Slc5a10
Name: solute carrier family 5 member 10
RGD ID: 12530456
Description: ENCODES a protein that exhibits fructose:sodium symporter activity (inferred); glucose:sodium symporter activity (inferred); mannose:sodium symporter activity (inferred); INVOLVED IN fructose transmembrane transport (inferred); glucose transmembrane transport (inferred); mannose transmembrane transport (inferred); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium/glucose cotransporter 5; solute carrier family 5 member 10, transcript variant X1; solute carrier family 5 member 10, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,925,690 - 59,979,680 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936881607,818 - 661,615 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936881607,818 - 661,573 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc5a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,925,690 - 59,979,680 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936881607,818 - 661,615 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936881607,818 - 661,573 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC5A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,950,676 - 19,022,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,950,345 - 19,022,595 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,853,989 - 18,925,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,796,203 - 18,864,728 (+)NCBINCBI36Build 36hg18NCBI36
Build 341718,794,713 - 18,864,722NCBI
Celera1720,769,838 - 20,834,185 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1718,419,873 - 18,491,306 (+)NCBIHuRef
CHM1_11718,862,768 - 18,932,795 (+)NCBICHM1_1
T2T-CHM13v2.01718,897,202 - 18,970,458 (+)NCBIT2T-CHM13v2.0
Slc5a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,563,608 - 61,611,641 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,563,607 - 61,611,652 (-)EnsemblGRCm39 Ensembl
GRCm381161,672,782 - 61,720,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,672,781 - 61,720,826 (-)EnsemblGRCm38mm10GRCm38
MGSCv371161,486,284 - 61,534,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,488,977 - 61,536,994 (-)NCBIMGSCv36mm8
MGSCv361162,101,847 - 62,149,864 (-)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Slc5a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,851,527 - 46,898,460 (-)NCBIGRCr8
mRatBN7.21046,352,060 - 46,400,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,352,061 - 46,399,811 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,055,785 - 51,102,222 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,546,320 - 50,592,757 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,049,731 - 46,096,169 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,949,775 - 47,997,802 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,949,665 - 47,997,796 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,742,919 - 47,789,930 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,831,700 - 47,878,552 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,845,143 - 47,900,313 (-)NCBI
Celera1045,600,367 - 45,646,479 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc5a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467581,129 - 654,639 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955467581,120 - 654,441 (-)NCBIChiLan1.0ChiLan1.0
SLC5A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21954,023,293 - 54,094,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11758,645,521 - 58,717,194 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,219,877 - 32,289,598 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11737,152,047 - 37,221,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1737,152,047 - 37,221,554 (-)Ensemblpanpan1.1panPan2
SLC5A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,038,968 - 41,095,463 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,039,015 - 41,167,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,180,269 - 41,236,575 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,146,582 - 41,203,038 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,146,629 - 41,203,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,114,543 - 41,170,824 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,061,603 - 41,117,896 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,253,746 - 41,310,052 (-)NCBIUU_Cfam_GSD_1.0
SLC5A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,281,885 - 60,332,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,281,883 - 60,332,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,935,020 - 62,950,211 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242501
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,651,157 - 17,721,260 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,652,357 - 17,721,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,213,903 - 3,224,034 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc5a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248495,368,343 - 5,441,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248495,364,527 - 5,441,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000012751   ⟹   ENSSTOP00000011427
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936881607,818 - 661,615 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034931   ⟹   ENSSTOP00000026951
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936881607,818 - 661,615 (-)Ensembl
RefSeq Acc Id: XM_013365776   ⟹   XP_013221230
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560259,925,690 - 59,979,680 (+)NCBI
SpeTri2.0NW_004936881607,818 - 661,573 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021720940   ⟹   XP_021576615
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560259,925,690 - 59,979,680 (+)NCBI
SpeTri2.0NW_004936881607,818 - 661,573 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013221230 (Get FASTA)   NCBI Sequence Viewer  
  XP_021576615 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011427.3
  ENSSTOP00000026951.1
GenBank Protein KAG3270272 (Get FASTA)   NCBI Sequence Viewer  
  KAG3270273 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013221230   ⟸   XM_013365776
- Peptide Label: isoform X2
- UniProtKB: I3MJR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576615   ⟸   XM_021720940
- Peptide Label: isoform X1
- UniProtKB: I3MJR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000011427   ⟸   ENSSTOT00000012751
RefSeq Acc Id: ENSSTOP00000026951   ⟸   ENSSTOT00000034931


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012751 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012751.3 UniProtKB/TrEMBL
  ENSSTOT00000034931.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1730.10 UniProtKB/TrEMBL
InterPro Na/Glc_symporter_sf UniProtKB/TrEMBL
  Na/solute_symporter UniProtKB/TrEMBL
  Na/solute_symporter_CS UniProtKB/TrEMBL
NCBI Gene Slc5a10 ENTREZGENE
PANTHER SODIUM/GLUCOSE COTRANSPORTER 5 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 5 UniProtKB/TrEMBL
Pfam SSF UniProtKB/TrEMBL
PROSITE NA_SOLUT_SYMP_2 UniProtKB/TrEMBL
  NA_SOLUT_SYMP_3 UniProtKB/TrEMBL
UniProt A0A287D0A1_ICTTR UniProtKB/TrEMBL
  I3MJR0 ENTREZGENE, UniProtKB/TrEMBL